Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002221.1

Orthogroup ID

OG0010614

Physical Location & Seq

Genomic Coordinates Forward (+)

25606 .. 27692

Gene Structure 2087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002221.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgtgttgggctcatttcgataagattagacaacgtggttttgggactgtttactatgccaagctgagaagcgaggatgatactcaaattgtgacagcttctggtgatcaatctattctgtatccaagcagagtgactgttttaaagatcgcatatcctttgaatgccgatttaggaaagcggggttcaatttgcacatgggagagtttaattgatcttcatggaattactgcctcaggtaccattttcatgtaccatggaggagcgaattttggccgaagtcctgctggtccctccattgcaactaattatgactatgatgcacctctagatgaatatggactaccaagggaaccaaaatatagccatttgaaatatctgcacaaagccatcaaattagcatatgcagattatagtggctactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

141

Amino Acids

15.77

Weight (kDa)

7.76

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334601 RchiOBHm_Chr1g0334631 RchiOBHm_Chr2g0109431 RchiOBHm_Chr2g0148431 RchiOBHm_Chr6g0275821
rosa_laevigata	RLG00000009993
rosa_multiflora	Rmu_sc0002221.1_g000003 Rmu_sc0004665.1_g000012 Rmu_sc0014838.1_g000002 Rmu_sc0017665.1_g000004
rosa_roxburghii	Rroxscaffold_3G00234660 Rroxscaffold_5G00342370
rosa_rugosa	Rorug01G0476400 Rorug02G0443800 Rorug03G0163300 Rorug03G0163400 Rorug06G0151100
rosa_samantha	Rh3BG247300 Rh4CG029600 Rh6BG125800 Rh6DG148400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	239
AciI	CCGC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	268
AfaI	GTAC	2 cut(s)	241, 254
AgsI	TTSAA	3 cut(s)	163, 189, 373
AluBI	AGCT	2 cut(s)	64, 98
AluI	AGCT	2 cut(s)	64, 98
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	274
ApoI	RAATTY	1 cut(s)	268
Asp718I	GGTACC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	290
AxyI	CCTNAGG	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	13
BccI	CCATC	1 cut(s)	398
BciVI	GTATCC	1 cut(s)	132
BclI	TGATCA	1 cut(s)	106
BfaI	CTAG	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	3 cut(s)	241, 292, 354
BmsI	GCATC	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	256, 347
Bse21I	CCTNAGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	256, 347
BseGI	GGATG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	56, 249
BseRI	GAGGAG	1 cut(s)	276
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	239
BslFI	GGGAC	2 cut(s)	58, 276
BsmFI	GGGAC	2 cut(s)	58, 276
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	106, 147, 214
Bsp19I	CCATGG	1 cut(s)	256
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	2 cut(s)	57, 248
BspLI	GGNNCC	3 cut(s)	241, 292, 354
BspT107I	GGYRCC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	297
BssECI	CCNNGG	2 cut(s)	256, 347
BssMI	GATC	3 cut(s)	106, 147, 214
BssT1I	CCWWGG	2 cut(s)	256, 347
Bst4CI	ACNGT	2 cut(s)	49, 139
BstDEI	CTNAG	2 cut(s)	65, 235
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	3 cut(s)	109, 150, 217
BstMBI	GATC	3 cut(s)	106, 147, 214
Bsu36I	CCTNAGG	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	240, 253
CviAII	CATG	4 cut(s)	198, 221, 250, 257
CviJI	RGCY	7 cut(s)	11, 64, 98, 276, 366, 389, 420
CviKI_1	RGCY	7 cut(s)	11, 64, 98, 276, 366, 389, 420
CviQI	GTAC	2 cut(s)	240, 253
DdeI	CTNAG	2 cut(s)	65, 235
DpnI	GATC	3 cut(s)	108, 149, 216
DpnII	GATC	3 cut(s)	106, 147, 214
DraI	TTTAAA	1 cut(s)	144
EaeI	YGGCCR	1 cut(s)	274
Eco130I	CCWWGG	2 cut(s)	256, 347
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	290
Eco81I	CCTNAGG	1 cut(s)	235
EcoT14I	CCWWGG	2 cut(s)	256, 347
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	256, 347
FaeI	CATG	4 cut(s)	201, 224, 253, 260
FaqI	GGGAC	2 cut(s)	58, 276
FatI	CATG	4 cut(s)	197, 220, 249, 256
FauI	CCCGC	1 cut(s)	174
FauNDI	CATATG	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	106
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	13
FspBI	CTAG	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	201, 224, 253, 260
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4III	ACNGT	2 cut(s)	49, 139
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	5 cut(s)	195, 302, 323, 382, 407
HpyF3I	CTNAG	2 cut(s)	65, 235
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	4 cut(s)	201, 224, 253, 260
KpnI	GGTACC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	106, 147, 214
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	4 cut(s)	87, 222, 273, 297
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	2 cut(s)	91, 133
MalI	GATC	3 cut(s)	108, 149, 216
MboI	GATC	3 cut(s)	106, 147, 214
MboII	GAAGA	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	7 cut(s)	87, 189, 210, 225, 268, 307, 395
MnlI	CCTC	5 cut(s)	67, 244, 254, 304, 336
MseI	TTAA	2 cut(s)	143, 209
MslI	CAYNNNNRTG	1 cut(s)	248
Mva1269I	GAATGC	1 cut(s)	169
NcoI	CCATGG	1 cut(s)	256
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	3 cut(s)	106, 147, 214
NlaIII	CATG	4 cut(s)	201, 224, 253, 260
NlaIV	GGNNCC	3 cut(s)	241, 292, 354
NmuCI	GTSAC	2 cut(s)	91, 133
PctI	GAATGC	1 cut(s)	169
PspN4I	GGNNCC	3 cut(s)	241, 292, 354
PspPI	GGNCC	1 cut(s)	290
PstNI	CAGNNNCTG	1 cut(s)	101
RsaI	GTAC	2 cut(s)	241, 254
RsaNI	GTAC	2 cut(s)	240, 253
RseI	CAYNNNNRTG	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	143, 209
Sau3AI	GATC	3 cut(s)	106, 147, 214
Sau96I	GGNCC	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	5 cut(s)	37, 66, 100, 241, 328
SfaNI	GCATC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	7 cut(s)	87, 189, 210, 225, 268, 307, 395
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	1 cut(s)	329
StyI	CCWWGG	2 cut(s)	256, 347
TaaI	ACNGT	2 cut(s)	49, 139
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	18
TasI	AATT	7 cut(s)	87, 189, 210, 225, 268, 307, 395
Tru1I	TTAA	2 cut(s)	143, 209
Tru9I	TTAA	2 cut(s)	143, 209
TseFI	GTSAC	2 cut(s)	91, 133
Tsp45I	GTSAC	2 cut(s)	91, 133
TspDTI	ATGAA	3 cut(s)	209, 238, 348
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	268
XbaI	TCTAGA	1 cut(s)	328
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.