No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0334601 RchiOBHm_Chr1g0334631 RchiOBHm_Chr2g0109431 RchiOBHm_Chr2g0148431 RchiOBHm_Chr6g0275821 |
| rosa_laevigata | RLG00000009993 |
| rosa_multiflora | Rmu_sc0002221.1_g000003 Rmu_sc0004665.1_g000012 Rmu_sc0014838.1_g000002 Rmu_sc0017665.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00234660 Rroxscaffold_5G00342370 |
| rosa_rugosa | Rorug01G0476400 Rorug02G0443800 Rorug03G0163300 Rorug03G0163400 Rorug06G0151100 |
| rosa_samantha | Rh3BG247300 Rh4CG029600 Rh6BG125800 Rh6DG148400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 194 |
| AfaI | GTAC | 1 cut(s) | 20 |
| AgsI | TTSAA | 2 cut(s) | 130, 172 |
| BfaI | CTAG | 1 cut(s) | 159 |
| BisI | GCNGC | 1 cut(s) | 194 |
| BlsI | GCNGC | 1 cut(s) | 195 |
| BmiI | GGNNCC | 1 cut(s) | 38 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 167, 199 |
| Bpu10I | CCTNAGC | 1 cut(s) | 80 |
| Bse3DI | GCAATG | 1 cut(s) | 90 |
| BseMI | GCAATG | 1 cut(s) | 90 |
| BseMII | CTCAG | 1 cut(s) | 94 |
| BsmI | GAATGC | 1 cut(s) | 44 |
| Bsp1407I | TGTACA | 1 cut(s) | 18 |
| Bsp143I | GATC | 2 cut(s) | 10, 28 |
| BspACI | CCGC | 1 cut(s) | 194 |
| BspCNI | CTCAG | 1 cut(s) | 93 |
| BspLI | GGNNCC | 1 cut(s) | 38 |
| BsrDI | GCAATG | 1 cut(s) | 90 |
| BsrGI | TGTACA | 1 cut(s) | 18 |
| BssMI | GATC | 2 cut(s) | 10, 28 |
| Bst4CI | ACNGT | 1 cut(s) | 71 |
| BstAUI | TGTACA | 1 cut(s) | 18 |
| BstDEI | CTNAG | 1 cut(s) | 80 |
| BstKTI | GATC | 2 cut(s) | 13, 31 |
| BstMBI | GATC | 2 cut(s) | 10, 28 |
| Csp6I | GTAC | 1 cut(s) | 19 |
| CviAII | CATG | 1 cut(s) | 14 |
| CviJI | RGCY | 4 cut(s) | 37, 54, 79, 158 |
| CviKI_1 | RGCY | 4 cut(s) | 37, 54, 79, 158 |
| CviQI | GTAC | 1 cut(s) | 19 |
| DdeI | CTNAG | 1 cut(s) | 80 |
| DpnI | GATC | 2 cut(s) | 12, 30 |
| DpnII | GATC | 2 cut(s) | 10, 28 |
| FaeI | CATG | 1 cut(s) | 17 |
| FaiI | YATR | 3 cut(s) | 15, 140, 149 |
| FatI | CATG | 1 cut(s) | 13 |
| Fnu4HI | GCNGC | 1 cut(s) | 194 |
| Fsp4HI | GCNGC | 1 cut(s) | 194 |
| FspBI | CTAG | 1 cut(s) | 159 |
| GluI | GCNGC | 1 cut(s) | 194 |
| Hin1II | CATG | 1 cut(s) | 17 |
| HinfI | GANTC | 1 cut(s) | 109 |
| Hpy166II | GTNNAC | 2 cut(s) | 19, 21 |
| Hpy188I | TCNGA | 1 cut(s) | 33 |
| Hpy8I | GTNNAC | 2 cut(s) | 19, 21 |
| HpyAV | CCTTC | 1 cut(s) | 195 |
| HpyCH4III | ACNGT | 1 cut(s) | 71 |
| HpyCH4V | TGCA | 2 cut(s) | 44, 95 |
| HpyF3I | CTNAG | 1 cut(s) | 80 |
| Hsp92II | CATG | 1 cut(s) | 17 |
| Kzo9I | GATC | 2 cut(s) | 10, 28 |
| LmnI | GCTCC | 1 cut(s) | 42 |
| LpnPI | CCDG | 3 cut(s) | 36, 67, 111 |
| MaeI | CTAG | 1 cut(s) | 159 |
| MalI | GATC | 2 cut(s) | 12, 30 |
| MboI | GATC | 2 cut(s) | 10, 28 |
| MboII | GAAGA | 1 cut(s) | 20 |
| MnlI | CCTC | 2 cut(s) | 27, 191 |
| MseI | TTAA | 2 cut(s) | 66, 87 |
| Mva1269I | GAATGC | 1 cut(s) | 44 |
| NdeII | GATC | 2 cut(s) | 10, 28 |
| NlaIII | CATG | 1 cut(s) | 17 |
| NlaIV | GGNNCC | 1 cut(s) | 38 |
| PctI | GAATGC | 1 cut(s) | 44 |
| PfeI | GAWTC | 1 cut(s) | 109 |
| PkrI | GCNGC | 1 cut(s) | 195 |
| PspN4I | GGNNCC | 1 cut(s) | 38 |
| RsaI | GTAC | 1 cut(s) | 20 |
| RsaNI | GTAC | 1 cut(s) | 19 |
| SaqAI | TTAA | 2 cut(s) | 66, 87 |
| SatI | GCNGC | 1 cut(s) | 194 |
| Sau3AI | GATC | 2 cut(s) | 10, 28 |
| SetI | ASST | 3 cut(s) | 86, 183, 206 |
| SgeI | CNNG | 8 cut(s) | 26, 53, 63, 94, 110, 115, 125, 171 |
| SsiI | CCGC | 1 cut(s) | 194 |
| SspMI | CTAG | 1 cut(s) | 159 |
| TaaI | ACNGT | 1 cut(s) | 71 |
| TatI | WGTACW | 1 cut(s) | 18 |
| TauI | GCSGC | 1 cut(s) | 196 |
| TfiI | GAWTC | 1 cut(s) | 109 |
| Tru1I | TTAA | 2 cut(s) | 66, 87 |
| Tru9I | TTAA | 2 cut(s) | 66, 87 |
| TspDTI | ATGAA | 1 cut(s) | 122 |
| XspI | CTAG | 1 cut(s) | 159 |