Rorug03G0163400

Type I inositol 1,4,5-trisphosphate 5-phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010614
Physical Location & Seq
Forward (+)
13617049 .. 13617839
791 bp
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UTR
Exon/CDS
Intron
Rorug03G0163400.1

Sequence Viewer

Length: 399 bp
ATGGGTTTTTGTTACTTGGCAAGGTTTTTTAACGAGGCAACAATAAGCGTGTCAAATACCATCATTCATTGGTGGACATCCAAGGCGGAGTGTTCTGGTGGATTTGTATTCAGAGATGCTGATGGGCAACCCCTCTTAGTAGCCTGCTATCAACTTCCAACTACTAATATCCTGTTGGTTGAAGGTCTCGCTCTTTGTGTAGGCCTTCGTGCAGCTGTTTTACATGGATTCTCTGATTTGGTAATTGAAGGTGACTCAAAAACCTTGATTGATGCCTTAAACGGCTTTGCTCGGATTCCTTGGCGGCTTAGGTCTATTGTAAATGATATATGGTCTCTTTGTACACTCCTACATCACCCGCAGATTAAGCATGTTCATCGTGTGAAGCCAACTTTCTGA

Protein Analysis

132

Amino Acids

14.77

Weight (kDa)

7.71

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 31 - 127 5e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 86, 304, 359
AfaI GTAC 1 cut(s) 343
AgsI TTSAA 2 cut(s) 182, 248
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 191, 339
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 263, 347
BbvI GCAGC 1 cut(s) 224
BccI CCATC 2 cut(s) 68, 116
BceAI ACGGC 1 cut(s) 298
BcgI CGANNNNNNTGC 2 cut(s) 359, 393
BcoDI GTCTC 2 cut(s) 191, 339
BisI GCNGC 2 cut(s) 213, 305
BlsI GCNGC 2 cut(s) 214, 306
BmsI GCATC 2 cut(s) 106, 262
Bpu10I CCTNAGC 1 cut(s) 308
BsaI GGTCTC 2 cut(s) 191, 339
BsaJI CCNNGG 2 cut(s) 81, 299
BseDI CCNNGG 2 cut(s) 81, 299
BseGI GGATG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 224
BsgI GTGCAG 1 cut(s) 231
BshFI GGCC 1 cut(s) 204
BsmAI GTCTC 2 cut(s) 191, 339
BsnI GGCC 1 cut(s) 204
Bso31I GGTCTC 2 cut(s) 191, 339
Bsp1407I TGTACA 1 cut(s) 341
BspACI CCGC 3 cut(s) 86, 304, 359
BspANI GGCC 1 cut(s) 204
BspTNI GGTCTC 2 cut(s) 191, 339
BsrGI TGTACA 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 81, 299
BssT1I CCWWGG 2 cut(s) 81, 299
BstAUI TGTACA 1 cut(s) 341
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 136, 308
BstF5I GGATG 1 cut(s) 77
BstMAI GTCTC 2 cut(s) 191, 339
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstNSI RCATGY 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 204
BtsCI GGATG 1 cut(s) 77
Cac8I GCNNGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 342
CviAII CATG 2 cut(s) 224, 371
CviJI RGCY 6 cut(s) 143, 204, 215, 285, 307, 388
CviKI_1 RGCY 6 cut(s) 143, 204, 215, 285, 307, 388
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 2 cut(s) 136, 308
EciI GGCGGA 1 cut(s) 101
Eco130I CCWWGG 2 cut(s) 81, 299
Eco147I AGGCCT 1 cut(s) 204
Eco31I GGTCTC 2 cut(s) 191, 339
EcoT14I CCWWGG 2 cut(s) 81, 299
ErhI CCWWGG 2 cut(s) 81, 299
FaeI CATG 2 cut(s) 227, 374
FaiI YATR 4 cut(s) 225, 329, 331, 372
FatI CATG 2 cut(s) 223, 370
FauI CCCGC 1 cut(s) 366
Fnu4HI GCNGC 2 cut(s) 213, 305
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 2 cut(s) 213, 305
GluI GCNGC 2 cut(s) 213, 305
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 2 cut(s) 227, 374
HinfI GANTC 3 cut(s) 228, 254, 295
HphI GGTGA 2 cut(s) 263, 347
Hpy166II GTNNAC 2 cut(s) 75, 344
Hpy188I TCNGA 4 cut(s) 113, 235, 294, 398
Hpy8I GTNNAC 2 cut(s) 75, 344
HpyAV CCTTC 3 cut(s) 176, 215, 242
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 2 cut(s) 136, 308
Hsp92II CATG 2 cut(s) 227, 374
LpnPI CCDG 3 cut(s) 81, 157, 185
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 2 cut(s) 106, 262
MaeIII GTNAC 2 cut(s) 11, 251
MluCI AATT 1 cut(s) 243
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 2 cut(s) 28, 143
MseI TTAA 3 cut(s) 30, 278, 366
MspA1I CMGCKG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 367
NlaIII CATG 2 cut(s) 227, 374
NmuCI GTSAC 1 cut(s) 251
NspI RCATGY 1 cut(s) 374
PceI AGGCCT 1 cut(s) 204
PfeI GAWTC 2 cut(s) 228, 295
PkrI GCNGC 2 cut(s) 214, 306
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SaqAI TTAA 3 cut(s) 30, 278, 366
SatI GCNGC 2 cut(s) 213, 305
SchI GAGTC 1 cut(s) 248
SetI ASST 6 cut(s) 26, 187, 217, 253, 266, 314
SfaNI GCATC 2 cut(s) 106, 262
Sse9I AATT 1 cut(s) 243
SseBI AGGCCT 1 cut(s) 204
SsiI CCGC 3 cut(s) 86, 304, 359
StuI AGGCCT 1 cut(s) 204
StyI CCWWGG 2 cut(s) 81, 299
TasI AATT 1 cut(s) 243
TatI WGTACW 1 cut(s) 341
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 2 cut(s) 228, 295
Tru1I TTAA 3 cut(s) 30, 278, 366
Tru9I TTAA 3 cut(s) 30, 278, 366
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 56, 365
XceI RCATGY 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.