Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014838.1

Orthogroup ID

OG0010614

Physical Location & Seq

Genomic Coordinates Reverse (-)

10406 .. 12239

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014838.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atggttttgttcctgtttgtatatgcagattctgtatccaagcaggtctgccattaccctgatcctgtaacaagtttaaggaaagcgggggtcaatttgcacaggaacatattgcctccacatggaaactcatgggagagtttaatcgatcttcatggaattactgcctcaggttttactctgattttgttacagtaccatggaggagcgaattttggccgaagtcctgctggtccctccattgcaactaattatgactatgatgcacctctagatgaatatggactaccaagggaaccaaaatatagccatttgaaatatctgcacaaagccatcaaattagcatatgcagattatagtggctactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

122

Amino Acids

13.6

Weight (kDa)

7.05

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334601 RchiOBHm_Chr1g0334631 RchiOBHm_Chr2g0109431 RchiOBHm_Chr2g0148431 RchiOBHm_Chr6g0275821
rosa_laevigata	RLG00000009993
rosa_multiflora	Rmu_sc0002221.1_g000003 Rmu_sc0004665.1_g000012 Rmu_sc0014838.1_g000002 Rmu_sc0017665.1_g000004
rosa_roxburghii	Rroxscaffold_3G00234660 Rroxscaffold_5G00342370
rosa_rugosa	Rorug01G0476400 Rorug02G0443800 Rorug03G0163300 Rorug03G0163400 Rorug06G0151100
rosa_samantha	Rh3BG247300 Rh4CG029600 Rh6BG125800 Rh6DG148400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	34
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	316
AlwI	GGATC	1 cut(s)	56
AlwNI	CAGNNNCTG	1 cut(s)	32
AoxI	GGCC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	233
AxyI	CCTNAGG	1 cut(s)	169
BccI	CCATC	1 cut(s)	341
BciVI	GTATCC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	34
BfuI	GTATCC	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	235, 297
BmsI	GCATC	1 cut(s)	253
Bsa29I	ATCGAT	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	199, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse21I	CCTNAGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	199, 290
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	219
BshVI	ATCGAT	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	61, 148
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	182
BspDI	ATCGAT	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	235, 297
BspMI	ACCTGC	1 cut(s)	34
BspPI	GGATC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	199, 290
BssMI	GATC	2 cut(s)	61, 148
BssT1I	CCWWGG	2 cut(s)	199, 290
Bst4CI	ACNGT	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	169
BstDSI	CCRYGG	1 cut(s)	199
BstKTI	GATC	2 cut(s)	64, 151
BstMBI	GATC	2 cut(s)	61, 148
Bsu15I	ATCGAT	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	219
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	199
BveI	ACCTGC	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	233
ClaI	ATCGAT	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	4 cut(s)	122, 132, 155, 200
CviJI	RGCY	4 cut(s)	219, 309, 332, 363
CviKI_1	RGCY	4 cut(s)	219, 309, 332, 363
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	169
DpnI	GATC	2 cut(s)	63, 150
DpnII	GATC	2 cut(s)	61, 148
EaeI	YGGCCR	1 cut(s)	217
Eco130I	CCWWGG	2 cut(s)	199, 290
Eco47I	GGWCC	1 cut(s)	233
Eco81I	CCTNAGG	1 cut(s)	169
EcoT14I	CCWWGG	2 cut(s)	199, 290
ErhI	CCWWGG	2 cut(s)	199, 290
FaeI	CATG	4 cut(s)	125, 135, 158, 203
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	4 cut(s)	121, 131, 154, 199
FauI	CCCGC	1 cut(s)	79
FauNDI	CATATG	1 cut(s)	346
FspBI	CTAG	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	219
Hin1II	CATG	4 cut(s)	125, 135, 158, 203
HinfI	GANTC	1 cut(s)	29
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4V	TGCA	6 cut(s)	26, 100, 245, 266, 325, 350
HpyF3I	CTNAG	1 cut(s)	169
Hsp92II	CATG	4 cut(s)	125, 135, 158, 203
Kzo9I	GATC	2 cut(s)	61, 148
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	8 cut(s)	26, 29, 72, 78, 88, 156, 216, 240
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	67, 189
MalI	GATC	2 cut(s)	63, 150
MboI	GATC	2 cut(s)	61, 148
MboII	GAAGA	1 cut(s)	143
MluCI	AATT	5 cut(s)	94, 159, 211, 250, 338
MnlI	CCTC	5 cut(s)	126, 178, 197, 247, 279
MseI	TTAA	2 cut(s)	77, 143
NcoI	CCATGG	1 cut(s)	199
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	2 cut(s)	61, 148
NlaIII	CATG	4 cut(s)	125, 135, 158, 203
NlaIV	GGNNCC	2 cut(s)	235, 297
PfeI	GAWTC	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	235, 297
PspPI	GGNCC	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	77, 143
Sau3AI	GATC	2 cut(s)	61, 148
Sau96I	GGNCC	1 cut(s)	233
SetI	ASST	3 cut(s)	48, 175, 271
SfaNI	GCATC	1 cut(s)	253
SinI	GGWCC	1 cut(s)	233
Sse9I	AATT	5 cut(s)	94, 159, 211, 250, 338
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	272
StyI	CCWWGG	2 cut(s)	199, 290
TaaI	ACNGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	147
TasI	AATT	5 cut(s)	94, 159, 211, 250, 338
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	77, 143
Tru9I	TTAA	2 cut(s)	77, 143
TspDTI	ATGAA	2 cut(s)	143, 291
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	271
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.