Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017665.1

Orthogroup ID

OG0010614

Physical Location & Seq

Genomic Coordinates Reverse (-)

16454 .. 19518

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017665.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgatgatacgtgcactctgtgctgctggaaaagctgttgtgccaatggaatttgacaaggaaatggtacagaaggacatcggacaccgacagaagcctgagggaaatctccccatagtggccttaatctggacgatattcttcagtttaataattcatcaaacatatctgtcttgggctgatttcgataagattggacaaggtggttttggggttgttttctatgccaagctgacaagcgaggatgatactaaaattgtgacagcttctggtgatcaaactgttaaggtatgggatatcaggaaaagaaatgtactgcagttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

108

Amino Acids

12.23

Weight (kDa)

7.87

Isoelectric Point (pI)

20.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0334601 RchiOBHm_Chr1g0334631 RchiOBHm_Chr2g0109431 RchiOBHm_Chr2g0148431 RchiOBHm_Chr6g0275821
rosa_laevigata	RLG00000009993
rosa_multiflora	Rmu_sc0002221.1_g000003 Rmu_sc0004665.1_g000012 Rmu_sc0014838.1_g000002 Rmu_sc0017665.1_g000004
rosa_roxburghii	Rroxscaffold_3G00234660 Rroxscaffold_5G00342370
rosa_rugosa	Rorug01G0476400 Rorug02G0443800 Rorug03G0163300 Rorug03G0163400 Rorug06G0151100
rosa_samantha	Rh3BG247300 Rh4CG029600 Rh6BG125800 Rh6DG148400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	127
AdeI	CACNNNGTG	1 cut(s)	20
AfaI	GTAC	2 cut(s)	69, 315
AfiI	CCNNNNNNNGG	2 cut(s)	118, 129
AluBI	AGCT	3 cut(s)	35, 232, 266
AluI	AGCT	3 cut(s)	35, 232, 266
Alw21I	GWGCWC	1 cut(s)	16
Alw44I	GTGCAC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	120
ApaLI	GTGCAC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	284
AxyI	CCTNAGG	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	10
BclI	TGATCA	1 cut(s)	274
BfmI	CTRYAG	1 cut(s)	317
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
BsaAI	YACGTR	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 129
Bse21I	CCTNAGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	118, 129
BseMII	CTCAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	10
BshFI	GGCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	118, 129
BsnI	GGCC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	321
BssMI	GATC	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBAI	YACGTR	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 32
BstSFI	CTRYAG	1 cut(s)	317
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	10
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	250
CaiI	CAGNNNCTG	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	68, 314
CviJI	RGCY	6 cut(s)	35, 97, 122, 179, 232, 266
CviKI_1	RGCY	6 cut(s)	35, 97, 122, 179, 232, 266
CviQI	GTAC	2 cut(s)	68, 314
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DraIII	CACNNNGTG	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	127
Eco81I	CCTNAGG	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	298
FaiI	YATR	4 cut(s)	116, 166, 225, 292
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	122
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	2 cut(s)	130, 301
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	14, 319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 32
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	5 cut(s)	12, 111, 115, 255, 286
Lsp1109I	GCAGC	1 cut(s)	10
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	3 cut(s)	50, 153, 255
MnlI	CCTC	2 cut(s)	94, 235
MseI	TTAA	3 cut(s)	125, 149, 285
MwoI	GCNNNNNNNGC	2 cut(s)	20, 32
NdeII	GATC	1 cut(s)	274
NmuCI	GTSAC	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	25
Ppu21I	YACGTR	1 cut(s)	11
PstI	CTGCAG	1 cut(s)	321
PstNI	CAGNNNCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	69, 315
RsaNI	GTAC	2 cut(s)	68, 314
SaqAI	TTAA	3 cut(s)	125, 149, 285
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	6 cut(s)	13, 37, 205, 234, 268, 291
SfcI	CTRYAG	1 cut(s)	317
Sse9I	AATT	3 cut(s)	50, 153, 255
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	186
TasI	AATT	3 cut(s)	50, 153, 255
TatI	WGTACW	1 cut(s)	313
Tru1I	TTAA	3 cut(s)	125, 149, 285
Tru9I	TTAA	3 cut(s)	125, 149, 285
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	146
VneI	GTGCAC	1 cut(s)	12
XapI	RAATTY	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.