Rorug03G0163300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010614
Physical Location & Seq
Reverse (-)
13598280 .. 13600858
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0163300.1

Sequence Viewer

Length: 618 bp
ATGCCCTTAGTTGGCTTAATTTTTGCTCGGAAAAATTGTCAAAAACAGCTTTTGCTCAACGTACTTCTATTCTTCATTTGGAGTATCTGGAAAGAAAGGAATGTGAGGGTTTGGGACAATAAGCTCACTTCATCAAGTGATGTTGCTCTTATGTCATCTACAAGGCTAAGCAACTTCATTTTTCACAATTCTAAGTTTCAGAAAGTGACGGCTAAGCGAAGGGTCCTTAAGTGGAGAGCTCCTCCACAAGGGTGGTTGAAGATTAACTTTGATGGTGCATTTGATAGCGGTACTGGCAGGGCAGCAGTGGGCTTCGTTGTGCGAGATGATATTGGTACATGTATGGGTGCTGTTGGGAAAGTTATCTATCATATTGTTTCAGCAGAACATGCAGAGTTGGTGGCTTGTAGAGAGGCAGTTGGTTTTGTTATCAATTATTTTCTACATGCTGTTATTTTTGAAACAGACTGTTTGACTTTGAAGCAACAATTGTGTCAAGCTAGGACACAAAACATTTCAGCTTTTGATTTTCTGGAGCAAAGAAGGAAATATGAGTTAAATGAGGGAAACTCGCATGGAGTTATGAAGATTCAAGGATTCCTGATGACCCGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.38

Weight (kDa)

9.74

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 89 - 180 1.9e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 288
AfaI GTAC 3 cut(s) 63, 292, 337
AfiI CCNNNNNNNGG 2 cut(s) 11, 248
AflII CTTAAG 1 cut(s) 227
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 4 cut(s) 259, 461, 481, 593
AleI CACNNNNGTG 1 cut(s) 250
AluBI AGCT 5 cut(s) 49, 124, 239, 500, 521
AluI AGCT 5 cut(s) 49, 124, 239, 500, 521
Alw21I GWGCWC 1 cut(s) 241
Ama87I CYCGRG 1 cut(s) 609
ApeKI GCWGC 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 609
AvaII GGWCC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 314
BccI CCATC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 225
BfaI CTAG 1 cut(s) 501
BfrI CTTAAG 1 cut(s) 227
BisI GCNGC 1 cut(s) 303
BlpI GCTNAGC 2 cut(s) 167, 213
BlsI GCNGC 1 cut(s) 304
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 609
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 224
BplI GAGNNNNNCTC 4 cut(s) 226, 258, 554, 586
BpmI CTGGAG 1 cut(s) 554
Bpu1102I GCTNAGC 2 cut(s) 167, 213
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 248
Bse1I ACTGG 1 cut(s) 298
BseLI CCNNNNNNNGG 2 cut(s) 11, 248
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 609
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 11, 248
BsmFI GGGAC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 609
Bsp1286I GDGCHC 1 cut(s) 241
Bsp1720I GCTNAGC 2 cut(s) 167, 213
BspACI CCGC 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 224
BspTI CTTAAG 1 cut(s) 227
BsrI ACTGG 1 cut(s) 298
Bst4CI ACNGT 1 cut(s) 470
BstAFI CTTAAG 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 389
BstDEI CTNAG 4 cut(s) 7, 167, 192, 213
BstENI CCTNNNNNAGG 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 294, 389
BstNSI RCATGY 3 cut(s) 342, 392, 449
BstV1I GCAGC 1 cut(s) 314
BstXI CCANNNNNNTGG 1 cut(s) 252
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 3 cut(s) 62, 291, 336
CviAII CATG 4 cut(s) 339, 389, 446, 575
CviQI GTAC 3 cut(s) 62, 291, 336
DdeI CTNAG 4 cut(s) 7, 167, 192, 213
Ecl136II GAGCTC 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 239
Eco88I CYCGRG 1 cut(s) 609
EcoICRI GAGCTC 1 cut(s) 239
EcoNI CCTNNNNNAGG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 241
FaeI CATG 4 cut(s) 342, 392, 449, 578
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 1 cut(s) 128
FatI CATG 4 cut(s) 338, 388, 445, 574
Fnu4HI GCNGC 1 cut(s) 303
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 1 cut(s) 501
GluI GCNGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 554
Hin1II CATG 4 cut(s) 342, 392, 449, 578
HinfI GANTC 2 cut(s) 589, 597
Hpy188I TCNGA 2 cut(s) 30, 201
Hpy188III TCNNGA 3 cut(s) 88, 533, 601
HpyAV CCTTC 2 cut(s) 213, 537
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 278, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 389
HpyF3I CTNAG 4 cut(s) 7, 167, 192, 213
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 4 cut(s) 342, 392, 449, 578
LmnI GCTCC 2 cut(s) 244, 535
LpnPI CCDG 5 cut(s) 73, 279, 283, 518, 614
Lsp1109I GCAGC 1 cut(s) 314
MaeI CTAG 1 cut(s) 501
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 205
MboII GAAGA 3 cut(s) 64, 271, 598
MfeI CAATTG 1 cut(s) 488
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 5 cut(s) 18, 34, 187, 433, 488
MnlI CCTC 4 cut(s) 99, 252, 406, 556
MseI TTAA 4 cut(s) 17, 228, 264, 557
MslI CAYNNNNRTG 1 cut(s) 250
MspCI CTTAAG 1 cut(s) 227
MunI CAATTG 1 cut(s) 488
MwoI GCNNNNNNNGC 2 cut(s) 294, 389
NlaIII CATG 4 cut(s) 342, 392, 449, 578
NlaIV GGNNCC 1 cut(s) 224
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 3 cut(s) 342, 392, 449
OliI CACNNNNGTG 1 cut(s) 250
PciI ACATGT 1 cut(s) 338
PfeI GAWTC 2 cut(s) 589, 597
PkrI GCNGC 1 cut(s) 304
PpuMI RGGWCCY 1 cut(s) 223
PscI ACATGT 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 1 cut(s) 223
PspPPI RGGWCCY 1 cut(s) 223
RsaI GTAC 3 cut(s) 63, 292, 337
RsaNI GTAC 3 cut(s) 62, 291, 336
RseI CAYNNNNRTG 1 cut(s) 250
SacI GAGCTC 1 cut(s) 241
SaqAI TTAA 4 cut(s) 17, 228, 264, 557
SatI GCNGC 1 cut(s) 303
Sau96I GGNCC 1 cut(s) 223
SduI GDGCHC 1 cut(s) 241
SetI ASST 6 cut(s) 51, 63, 126, 241, 502, 523
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 5 cut(s) 18, 34, 187, 433, 488
SsiI CCGC 1 cut(s) 288
SspMI CTAG 1 cut(s) 501
SstI GAGCTC 1 cut(s) 241
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 1 cut(s) 63
TasI AATT 5 cut(s) 18, 34, 187, 433, 488
TfiI GAWTC 2 cut(s) 589, 597
Tru1I TTAA 4 cut(s) 17, 228, 264, 557
Tru9I TTAA 4 cut(s) 17, 228, 264, 557
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 4 cut(s) 64, 120, 166, 599
TspRI CASTG 1 cut(s) 312
Vha464I CTTAAG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 223
XagI CCTNNNNNAGG 1 cut(s) 246
XceI RCATGY 3 cut(s) 342, 392, 449
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.