RLG00000010676

Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
3509437 .. 3511013
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010676

Sequence Viewer

Length: 1470 bp
ATGGGAGCTGTAGTTGATTTCACCTCTCGTGTGGGAAAAGAACAGAGAATAGCTATGGATTTGGCTATCCAAGACCTTCTTCACTTGAACTGCCTTACAGTGAATTTAGACCTCAGAGATTCACAGGGAAGTACAGCTAAATCAACCGCTGCTGCAATCAATCTTCTGAATGGCAAACAAGTTGAAGCCATCATTGGAACACTGAAAATGCAAGAAGCAGCTCTTATCTCTGAGATTGATAATCAAACCGCAAACTTCACCATTTTATCACTTGCTTCACCTGCCATAAACCCACCATCAGCCTCACTTCAAATGCCAAATTTTCTCCAAGTAGCAAATGACATTGCTATCCATATGCAATGCTTGGCAGCCTTAGTCGGTCATTTTCAATGGAGAAAGGTGACTGTGATTTACGAACAAAAGAGTGATTTTTCCTACATTTCTGGAATGATAACCCTCCTCTCCGATTCACTTAAATTAGTCAACTCAGAGATTGAGCACCACCAAGCTTTCCCAACCCTCTCTTCTCTCTCTGATCCAGATTCCTTTTTCGATGAAGAGCTGAAGAAGTTGAGGAACAAAAGCAACAGGGTTTTCATACTTACCCAGTTCTCTTTAAATTCAGCTGTTTTTCTCTTTGGAAAGGCAAAGGAAACGGGGATGATGGGCAAAGGCTATGTATGGATTGTCACAGATGAGATTGCAAGTCTTCTTGACTCTATTGATTCTTCTATCAAGTACAATATGCAAGGTGTTATTGGTATTAAAACCAACTTCATAGAAATAAGTACAACCAAAAATTTCGCGAAATTCAAAACCAGATTTCGCAGACTATATGGACTGCAATACCCTGAGGAAGAAGAAAACTCTAGCCCTAGCATCTTTGCTCTTCGAACGTATGACGCAATGCAGGCCATGGCTTTAGCCATGAAATATGCTACCTCAAAACATTTGTCTCAAGAAATTCTGTCCACCAAATTCCAAGGTCTAAGTGGCATGATGGAGTTCAAGAATGGCATGCTATCACAACAACCAACCTTTCAAATCATTAATGTGTTTGGCAGAAGCTACAGCGAGATTGCGTTCTGGTCAACACGCTTTGGTTTCTCAGAGGCCATGAACGTTGATATGAAGGAGAGGACTAATCACAATTATGTTCAAGTTTTGGGTCCAATCAACTGGCCAGGTGGCTTACAAGCAGCTCCAAAGGGGTGGACTCTTATCGATGGAGAGAGACCGTTGAAGATAGGGATTCCAGCGAGGGGTGCCTTCAATCAATTTGTGAGAGTAACGTATGACCAGGACAAGAATCAGACACACATCTCAGGGTTTTCAATTGATATCTTTGAAGCAGCTATCAAAAACCTGCCCTATCAGTTGCCTTATGTGTTTGTTCCTTTCAATGGCTCATATGATGAATTGGTGGAACAGGTCTACTACAAGGTACGCATAATTTTTCTTCTAGACTAA

Protein Analysis

490

Amino Acids

54.92

Weight (kDa)

6.28

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 10 - 333 5.9e-10 Periplasmic binding protein
ANF_receptor PF01094 17 - 352 2.7e-41 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 289
Acc36I ACCTGC 2 cut(s) 289, 1374
AccB1I GGYRCC 1 cut(s) 1265
AccI GTMKAC 1 cut(s) 1434
AccII CGCG 1 cut(s) 806
AciI CCGC 2 cut(s) 147, 249
AclI AACGTT 1 cut(s) 1122
AclWI GGATC 1 cut(s) 530
AcoI YGGCCR 1 cut(s) 1181
AcsI RAATTY 7 cut(s) 103, 319, 619, 799, 809, 963, 977
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 4 cut(s) 133, 740, 790, 1446
AfiI CCNNNNNNNGG 2 cut(s) 1262, 1403
AjnI CCWGG 2 cut(s) 1183, 1299
AjuI GAANNNNNNNTTGG 6 cut(s) 63, 95, 177, 209, 508, 540
Alw21I GWGCWC 1 cut(s) 501
Alw26I GTCTC 2 cut(s) 960, 1228
AlwI GGATC 1 cut(s) 530
AoxI GGCC 3 cut(s) 912, 1113, 1181
ApeKI GCWGC 6 cut(s) 149, 152, 218, 368, 1199, 1352
ApoI RAATTY 7 cut(s) 103, 319, 619, 799, 809, 963, 977
ArsI GACNNNNNNTTYG 2 cut(s) 938, 970
AseI ATTAAT 1 cut(s) 1050
AspS9I GGNCC 1 cut(s) 1169
AsuHPI GGTGA 4 cut(s) 13, 250, 270, 412
AsuII TTCGAA 1 cut(s) 892
AvaII GGWCC 1 cut(s) 1169
AxyI CCTNAGG 1 cut(s) 852
BalI TGGCCA 1 cut(s) 1183
BanI GGYRCC 1 cut(s) 1265
BauI CACGAG 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 701
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 6 cut(s) 136, 139, 230, 380, 1211, 1364
BccI CCATC 5 cut(s) 197, 304, 658, 994, 1220
BciT130I CCWGG 2 cut(s) 1185, 1301
BcoDI GTCTC 2 cut(s) 960, 1228
BfaI CTAG 3 cut(s) 870, 876, 1463
BfmI CTRYAG 2 cut(s) 9, 1069
BfuAI ACCTGC 2 cut(s) 289, 1374
BisI GCNGC 6 cut(s) 150, 153, 219, 369, 1200, 1353
BlsI GCNGC 6 cut(s) 151, 154, 220, 370, 1201, 1354
Bme1390I CCNGG 2 cut(s) 1185, 1301
Bme18I GGWCC 1 cut(s) 1169
BmgT120I GGNCC 1 cut(s) 1169
BmiI GGNNCC 2 cut(s) 1170, 1267
BmrFI CCNGG 2 cut(s) 1185, 1301
BmrI ACTGGG 1 cut(s) 601
BmsI GCATC 1 cut(s) 888
BmuI ACTGGG 1 cut(s) 601
BpiI GAAGAC 1 cut(s) 701
Bpu14I TTCGAA 1 cut(s) 892
BpuEI CTTGAG 1 cut(s) 942
Bsa29I ATCGAT 1 cut(s) 1224
BsaI GGTCTC 1 cut(s) 1228
BsaJI CCNNGG 2 cut(s) 915, 982
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 2 cut(s) 1262, 1403
Bse1I ACTGG 2 cut(s) 607, 1184
Bse21I CCTNAGG 1 cut(s) 852
Bse3DI GCAATG 3 cut(s) 342, 365, 912
BseBI CCWGG 2 cut(s) 1185, 1301
BseCI ATCGAT 1 cut(s) 1224
BseDI CCNNGG 2 cut(s) 915, 982
BseGI GGATG 1 cut(s) 666
BseLI CCNNNNNNNGG 2 cut(s) 1262, 1403
BseMI GCAATG 3 cut(s) 342, 365, 912
BseMII CTCAG 6 cut(s) 127, 222, 501, 843, 1122, 1338
BseNI ACTGG 2 cut(s) 607, 1184
BseRI GAGGAG 1 cut(s) 449
BseXI GCAGC 6 cut(s) 136, 139, 230, 380, 1211, 1364
Bsh1236I CGCG 1 cut(s) 806
BshFI GGCC 3 cut(s) 914, 1115, 1183
BshNI GGYRCC 1 cut(s) 1265
BshVI ATCGAT 1 cut(s) 1224
BsiHKAI GWGCWC 1 cut(s) 501
BslI CCNNNNNNNGG 2 cut(s) 1262, 1403
BsmAI GTCTC 2 cut(s) 960, 1228
BsnI GGCC 3 cut(s) 914, 1115, 1183
Bso31I GGTCTC 1 cut(s) 1228
Bsp119I TTCGAA 1 cut(s) 892
Bsp1286I GDGCHC 1 cut(s) 501
Bsp143I GATC 1 cut(s) 535
Bsp19I CCATGG 1 cut(s) 915
Bsp68I TCGCGA 1 cut(s) 806
BspACI CCGC 2 cut(s) 147, 249
BspANI GGCC 3 cut(s) 914, 1115, 1183
BspCNI CTCAG 6 cut(s) 126, 223, 500, 844, 1121, 1337
BspDI ATCGAT 1 cut(s) 1224
BspFNI CGCG 1 cut(s) 806
BspLI GGNNCC 2 cut(s) 1170, 1267
BspMI ACCTGC 2 cut(s) 289, 1374
BspPI GGATC 1 cut(s) 530
BspQI GCTCTTC 2 cut(s) 552, 894
BspT104I TTCGAA 1 cut(s) 892
BspT107I GGYRCC 1 cut(s) 1265
BspTNI GGTCTC 1 cut(s) 1228
BsrDI GCAATG 3 cut(s) 342, 365, 912
BsrI ACTGG 2 cut(s) 607, 1184
BssECI CCNNGG 2 cut(s) 915, 982
BssMI GATC 1 cut(s) 535
BssSI CACGAG 1 cut(s) 27
BssT1I CCWWGG 2 cut(s) 915, 982
Bst2BI CACGAG 1 cut(s) 27
Bst2UI CCWGG 2 cut(s) 1185, 1301
Bst4CI ACNGT 3 cut(s) 100, 406, 1239
Bst6I CTCTTC 3 cut(s) 529, 552, 894
BstBI TTCGAA 1 cut(s) 892
BstC8I GCNNGC 2 cut(s) 912, 1019
BstDEI CTNAG 8 cut(s) 113, 231, 373, 487, 852, 989, 1108, 1324
BstDSI CCRYGG 1 cut(s) 915
BstF5I GGATG 1 cut(s) 666
BstFNI CGCG 1 cut(s) 806
BstKTI GATC 1 cut(s) 538
BstMAI GTCTC 2 cut(s) 960, 1228
BstMBI GATC 1 cut(s) 535
BstMWI GCNNNNNNNGC 3 cut(s) 281, 911, 1265
BstNI CCWGG 2 cut(s) 1185, 1301
BstNSI RCATGY 1 cut(s) 1021
BstSCI CCNGG 2 cut(s) 1183, 1299
BstSFI CTRYAG 2 cut(s) 9, 1069
BstUI CGCG 1 cut(s) 806
BstV1I GCAGC 6 cut(s) 136, 139, 230, 380, 1211, 1364
BstV2I GAAGAC 1 cut(s) 701
BstXI CCANNNNNNTGG 2 cut(s) 1179, 1212
Bsu15I ATCGAT 1 cut(s) 1224
Bsu36I CCTNAGG 1 cut(s) 852
BsuRI GGCC 3 cut(s) 914, 1115, 1183
BsuTUI ATCGAT 1 cut(s) 1224
BtgI CCRYGG 1 cut(s) 915
BtsCI GGATG 1 cut(s) 666
BtsIMutI CAGTG 2 cut(s) 105, 200
BtuMI TCGCGA 1 cut(s) 806
BveI ACCTGC 2 cut(s) 289, 1374
Cac8I GCNNGC 2 cut(s) 912, 1019
Cfr13I GGNCC 1 cut(s) 1169
ClaI ATCGAT 1 cut(s) 1224
CseI GACGC 1 cut(s) 911
Csp6I GTAC 4 cut(s) 132, 739, 789, 1445
CviAII CATG 5 cut(s) 916, 928, 997, 1018, 1117
CviQI GTAC 4 cut(s) 132, 739, 789, 1445
DdeI CTNAG 8 cut(s) 113, 231, 373, 487, 852, 989, 1108, 1324
DpnI GATC 1 cut(s) 537
DpnII GATC 1 cut(s) 535
DraI TTTAAA 1 cut(s) 618
EaeI YGGCCR 1 cut(s) 1181
Eam1104I CTCTTC 3 cut(s) 529, 552, 894
EarI CTCTTC 3 cut(s) 529, 552, 894
Eco130I CCWWGG 2 cut(s) 915, 982
Eco31I GGTCTC 1 cut(s) 1228
Eco32I GATATC 1 cut(s) 1342
Eco47I GGWCC 1 cut(s) 1169
Eco57I CTGAAG 1 cut(s) 584
Eco81I CCTNAGG 1 cut(s) 852
EcoRII CCWGG 2 cut(s) 1183, 1299
EcoRV GATATC 1 cut(s) 1342
EcoT14I CCWWGG 2 cut(s) 915, 982
ErhI CCWWGG 2 cut(s) 915, 982
FaeI CATG 5 cut(s) 919, 931, 1000, 1021, 1120
FalI AAGNNNNNCTT 4 cut(s) 63, 95, 207, 239
FatI CATG 5 cut(s) 915, 927, 996, 1017, 1116
FauNDI CATATG 2 cut(s) 354, 1411
FblI GTMKAC 1 cut(s) 1434
Fnu4HI GCNGC 6 cut(s) 150, 153, 219, 369, 1200, 1353
FokI GGATG 1 cut(s) 673
Fsp4HI GCNGC 6 cut(s) 150, 153, 219, 369, 1200, 1353
FspBI CTAG 3 cut(s) 870, 876, 1463
GluI GCNGC 6 cut(s) 150, 153, 219, 369, 1200, 1353
HaeIII GGCC 3 cut(s) 914, 1115, 1183
HgaI GACGC 1 cut(s) 911
Hin1II CATG 5 cut(s) 919, 931, 1000, 1021, 1120
HincII GTYRAC 2 cut(s) 484, 1092
HindII GTYRAC 2 cut(s) 484, 1092
HindIII AAGCTT 1 cut(s) 507
HinfI GANTC 8 cut(s) 119, 467, 542, 716, 725, 1216, 1252, 1309
HphI GGTGA 4 cut(s) 13, 250, 270, 412
Hpy166II GTNNAC 5 cut(s) 484, 972, 1092, 1215, 1435
Hpy188I TCNGA 8 cut(s) 116, 168, 232, 466, 490, 535, 1111, 1314
Hpy188III TCNNGA 7 cut(s) 444, 539, 713, 805, 959, 1009, 1463
Hpy8I GTNNAC 5 cut(s) 484, 972, 1092, 1215, 1435
HpyAV CCTTC 3 cut(s) 86, 1126, 1279
HpyCH4III ACNGT 3 cut(s) 100, 406, 1239
HpyCH4IV ACGT 3 cut(s) 896, 1122, 1292
HpyCH4V TGCA 7 cut(s) 155, 211, 358, 704, 748, 844, 910
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 911, 1265
HpyF3I CTNAG 8 cut(s) 113, 231, 373, 487, 852, 989, 1108, 1324
HpySE526I ACGT 3 cut(s) 896, 1122, 1292
Hsp92II CATG 5 cut(s) 919, 931, 1000, 1021, 1120
Kzo9I GATC 1 cut(s) 535
LguI GCTCTTC 2 cut(s) 552, 894
LmnI GCTCC 2 cut(s) 5, 1207
Lsp1109I GCAGC 6 cut(s) 136, 139, 230, 380, 1211, 1364
LweI GCATC 1 cut(s) 888
MaeI CTAG 3 cut(s) 870, 876, 1463
MaeII ACGT 3 cut(s) 896, 1122, 1292
MaeIII GTNAC 3 cut(s) 400, 688, 1288
MalI GATC 1 cut(s) 537
MboI GATC 1 cut(s) 535
MfeI CAATTG 1 cut(s) 1335
MhlI GDGCHC 1 cut(s) 501
MlsI TGGCCA 1 cut(s) 1183
MluNI TGGCCA 1 cut(s) 1183
MlyI GAGTC 2 cut(s) 710, 1210
Mox20I TGGCCA 1 cut(s) 1183
MscI TGGCCA 1 cut(s) 1183
MseI TTAA 4 cut(s) 474, 617, 765, 1050
MslI CAYNNNNRTG 2 cut(s) 1052, 1152
Msp20I TGGCCA 1 cut(s) 1183
MspA1I CMGCKG 2 cut(s) 149, 626
MspR9I CCNGG 2 cut(s) 1185, 1301
MunI CAATTG 1 cut(s) 1335
MvaI CCWGG 2 cut(s) 1185, 1301
MvnI CGCG 1 cut(s) 806
MwoI GCNNNNNNNGC 3 cut(s) 281, 911, 1265
NcoI CCATGG 1 cut(s) 915
NdeI CATATG 2 cut(s) 354, 1411
NdeII GATC 1 cut(s) 535
NlaIII CATG 5 cut(s) 919, 931, 1000, 1021, 1120
NlaIV GGNNCC 2 cut(s) 1170, 1267
NmuCI GTSAC 2 cut(s) 400, 688
NruI TCGCGA 1 cut(s) 806
NspI RCATGY 1 cut(s) 1021
NspV TTCGAA 1 cut(s) 892
PaeI GCATGC 1 cut(s) 1021
PaqCI CACCTGC 1 cut(s) 289
PciSI GCTCTTC 2 cut(s) 552, 894
PfeI GAWTC 6 cut(s) 119, 467, 542, 725, 1252, 1309
PkrI GCNGC 6 cut(s) 151, 154, 220, 370, 1201, 1354
PleI GAGTC 2 cut(s) 710, 1210
PpsI GAGTC 2 cut(s) 710, 1210
PshBI ATTAAT 1 cut(s) 1050
Psp1406I AACGTT 1 cut(s) 1122
Psp6I CCWGG 2 cut(s) 1183, 1299
PspGI CCWGG 2 cut(s) 1183, 1299
PspN4I GGNNCC 2 cut(s) 1170, 1267
PspPI GGNCC 1 cut(s) 1169
PvuII CAGCTG 1 cut(s) 626
RruI TCGCGA 1 cut(s) 806
RsaI GTAC 4 cut(s) 133, 740, 790, 1446
RsaNI GTAC 4 cut(s) 132, 739, 789, 1445
RseI CAYNNNNRTG 2 cut(s) 1052, 1152
SapI GCTCTTC 2 cut(s) 552, 894
SaqAI TTAA 4 cut(s) 474, 617, 765, 1050
SatI GCNGC 6 cut(s) 150, 153, 219, 369, 1200, 1353
Sau3AI GATC 1 cut(s) 535
Sau96I GGNCC 1 cut(s) 1169
SchI GAGTC 2 cut(s) 710, 1210
ScrFI CCNGG 2 cut(s) 1185, 1301
SduI GDGCHC 1 cut(s) 501
SfaNI GCATC 1 cut(s) 888
SfcI CTRYAG 2 cut(s) 9, 1069
SfuI TTCGAA 1 cut(s) 892
SinI GGWCC 1 cut(s) 1169
SmiMI CAYNNNNRTG 2 cut(s) 1052, 1152
SmlI CTYRAG 1 cut(s) 957
SmoI CTYRAG 1 cut(s) 957
SphI GCATGC 1 cut(s) 1021
SsiI CCGC 2 cut(s) 147, 249
SspMI CTAG 3 cut(s) 870, 876, 1463
StyD4I CCNGG 2 cut(s) 1183, 1299
StyI CCWWGG 2 cut(s) 915, 982
TaaI ACNGT 3 cut(s) 100, 406, 1239
TaiI ACGT 3 cut(s) 899, 1125, 1295
TaqI TCGA 3 cut(s) 552, 892, 1224
TaqII GACCGA 1 cut(s) 368
TatI WGTACW 3 cut(s) 131, 738, 788
TfiI GAWTC 6 cut(s) 119, 467, 542, 725, 1252, 1309
Tru1I TTAA 4 cut(s) 474, 617, 765, 1050
Tru9I TTAA 4 cut(s) 474, 617, 765, 1050
TscAI CASTG 2 cut(s) 105, 207
TseFI GTSAC 2 cut(s) 400, 688
TseI GCWGC 6 cut(s) 149, 152, 218, 368, 1199, 1352
Tsp45I GTSAC 2 cut(s) 400, 688
TspDTI ATGAA 7 cut(s) 570, 586, 766, 944, 1133, 1145, 1431
TspRI CASTG 2 cut(s) 105, 207
VpaK11BI GGWCC 1 cut(s) 1169
VspI ATTAAT 1 cut(s) 1050
XapI RAATTY 7 cut(s) 103, 319, 619, 799, 809, 963, 977
XbaI TCTAGA 1 cut(s) 1462
XceI RCATGY 1 cut(s) 1021
XcmI CCANNNNNNNNNTGG 1 cut(s) 989
XmiI GTMKAC 1 cut(s) 1434
XspI CTAG 3 cut(s) 870, 876, 1463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.