Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005524

Physical Location & Seq

Genomic Coordinates Reverse (-)

51105375 .. 51110301

Gene Structure 4927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0363000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGGGTAGAGAGAGTTCAAGACATTGCTTCTGCAACTTCCAAGGACACAATCCCAGTGGAGTTCATCAGGTCAGAGAATGAGCAGCCTGGAATCACCACCGTCCCCGGCACAGTCCTCGAGTGCCCTATCATTGATTTCAGCGACCCTGATGAGGAGAAACTCCTCAAACAAATCTTCGAGGCCAGCACCGACTGGGGCATGTACCAAATCGTGAACCACGACATTTCTAACGAGGCCATTGCCAAGTTGCAGGCCGTCGGAAAAGAGTTCTTTGAGCTTCCGCACGAGGAGAAAGAGGTTTACGCAAAAGATCCGAACTCTAAGTCCGTGGAGGGATACGGAACATTTTTACAGAAGGAACTAGAAGGGAAGAAAGGGTGGGTGGATCATCTGTTCCATAAGATTTGGCCACCTTCTGCCATTAACTACTGCTTTTGGCCTAAGAATCCAGCTTCTTACAGGGAAGCTAATGAAGAGTATGCAAAGAATCTACACAAGGTGGTGGAGAAGCTATTTAAACTGTTATCTTTGGGGTTAGGGCTTGAAGTACAAGAACTGAAGAAGGCAGTTGGTGGTGATGACTTGGTGTACCTTCTCAAAATTAATTACTACCCGCCTTGTCCCCGCCCTGATCTTGCTCTTGGTGTGGTTGCCCATACGGACATGTCCGCCCTCACCATTCTCGTCCCAAACGACGTTCAGGGCCTCCAAGCTTGCCGAGATGGCCAGTGGTACGATGTCAAATATATCCCTAATGCCCTAGTCATCCACATTGGTGATCAAATGGAGGTAATGAGCAATGGAAAGTTCAAGGCTGTGCTGCACAGAACCACAGTGAGCAAAGACAAGACGAGAATCTCTTGGCCAGTGTTTCTGGAACCTCCACCAGACCATATAATAGGGCCTCACCCCAAGCTCGTCAATGATAAGGAGAATCCACCAAAGTACAAGACCAAGAAGTACAGCGAGTATGTCTACAACAAGCTCAACAAGATCCCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

335

Amino Acids

38.05

Weight (kDa)

5.85

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	43 - 149	4.9e-25	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	199 - 295	5e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34370
malus_domestica	MD15G1082100.v1.1
prunus_persica	Prupe.1G434800_v2.0.a1
pyrus_communis	pycom15g07690
rosa_chinensis	RchiOBHm_Chr6g0308001 RchiOBHm_Chr6g0308011
rosa_laevigata	RLG00000010676 RLG00000010677 RLG00000010678 RLG00000010679
rosa_multiflora	Rmu_sc0006237.1_g000009 Rmu_sc0006237.1_g000010
rosa_roxburghii	Rroxscaffold_7G00160680 Rroxscaffold_7G00160690
rosa_rugosa	Rorug06G0362900 Rorug06G0363000
rosa_samantha	Rh6BG482500 Rh6BG482700 Rh6CG487800 Rh6CG488000 Rh6DG474100 Rh6DG474200
rosa_wichuraiana	Rw6G041170 Rw6G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	978
AciI	CCGC	4 cut(s)	284, 617, 628, 672
AclWI	GGATC	3 cut(s)	308, 396, 991
AcoI	YGGCCR	3 cut(s)	410, 727, 866
AcuI	CTGAAG	1 cut(s)	581
AdeI	CACNNNGTG	1 cut(s)	502
AfaI	GTAC	6 cut(s)	206, 552, 593, 737, 950, 965
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	3 cut(s)	20, 548, 814
AjnI	CCWGG	1 cut(s)	88
AleI	CACNNNNGTG	1 cut(s)	777
AloI	GAACNNNNNNTCC	4 cut(s)	311, 343, 380, 412
AluBI	AGCT	7 cut(s)	280, 455, 470, 514, 716, 919, 988
AluI	AGCT	7 cut(s)	280, 455, 470, 514, 716, 919, 988
AlwI	GGATC	3 cut(s)	308, 396, 991
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	9 cut(s)	183, 237, 255, 410, 440, 706, 727, 866, 905
ApeKI	GCWGC	2 cut(s)	85, 823
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AseI	ATTAAT	1 cut(s)	606
AspS9I	GGNCC	2 cut(s)	706, 905
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	5 cut(s)	88, 590, 670, 791, 902
AvaI	CYCGRG	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	128
BalI	TGGCCA	3 cut(s)	412, 729, 868
BauI	CACGAG	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	97, 810
BccI	CCATC	1 cut(s)	719
BceAI	ACGGC	1 cut(s)	242
BcgI	CGANNNNNNTGC	4 cut(s)	100, 134, 224, 258
BciT130I	CCWGG	1 cut(s)	90
BciVI	GTATCC	1 cut(s)	332
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	108
BfaI	CTAG	2 cut(s)	365, 764
BfuI	GTATCC	1 cut(s)	332
BglI	GCCNNNNNGGC	1 cut(s)	726
BisI	GCNGC	2 cut(s)	86, 824
BlsI	GCNGC	2 cut(s)	87, 825
Bme1390I	CCNGG	2 cut(s)	90, 108
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	706, 905
BmiI	GGNNCC	1 cut(s)	882
BmrFI	CCNGG	2 cut(s)	90, 108
BmrI	ACTGGG	3 cut(s)	50, 205, 997
BmuI	ACTGGG	3 cut(s)	50, 205, 997
BpuMI	CCSGG	1 cut(s)	108
BsaJI	CCNNGG	3 cut(s)	42, 106, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	5 cut(s)	56, 200, 730, 869, 1003
Bse3DI	GCAATG	3 cut(s)	24, 240, 808
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	3 cut(s)	42, 106, 330
BseGI	GGATG	1 cut(s)	768
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	3 cut(s)	24, 240, 808
BseNI	ACTGG	5 cut(s)	56, 200, 730, 869, 1003
BseRI	GAGGAG	3 cut(s)	155, 170, 305
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	2 cut(s)	97, 810
BsgI	GTGCAG	1 cut(s)	809
BshFI	GGCC	9 cut(s)	185, 239, 257, 412, 442, 708, 729, 868, 907
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	3 cut(s)	89, 609, 674
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmFI	GGGAC	3 cut(s)	89, 609, 674
BsnI	GGCC	9 cut(s)	185, 239, 257, 412, 442, 708, 729, 868, 907
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	5 cut(s)	313, 388, 634, 781, 996
BspACI	CCGC	4 cut(s)	284, 617, 628, 672
BspANI	GGCC	9 cut(s)	185, 239, 257, 412, 442, 708, 729, 868, 907
BspLI	GGNNCC	1 cut(s)	882
BspPI	GGATC	3 cut(s)	308, 396, 991
BsrDI	GCAATG	3 cut(s)	24, 240, 808
BsrI	ACTGG	5 cut(s)	56, 200, 730, 869, 1003
BssECI	CCNNGG	3 cut(s)	42, 106, 330
BssMI	GATC	5 cut(s)	313, 388, 634, 781, 996
BssSI	CACGAG	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	42
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	4 cut(s)	103, 115, 525, 838
Bst6I	CTCTTC	1 cut(s)	471
BstC8I	GCNNGC	3 cut(s)	187, 255, 718
BstDEI	CTNAG	2 cut(s)	324, 444
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	768
BstKTI	GATC	5 cut(s)	316, 391, 637, 784, 999
BstMBI	GATC	5 cut(s)	313, 388, 634, 781, 996
BstMWI	GCNNNNNNNGC	1 cut(s)	726
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	2 cut(s)	205, 670
BstSCI	CCNGG	2 cut(s)	88, 106
BstSLI	GKGCMC	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	97, 810
BstX2I	RGATCY	2 cut(s)	313, 996
BstYI	RGATCY	2 cut(s)	313, 996
BsuI	GTATCC	1 cut(s)	332
BsuRI	GGCC	9 cut(s)	185, 239, 257, 412, 442, 708, 729, 868, 907
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	768
BtsIMutI	CAGTG	4 cut(s)	63, 737, 843, 876
Cac8I	GCNNGC	3 cut(s)	187, 255, 718
Cfr13I	GGNCC	2 cut(s)	706, 905
Csp6I	GTAC	6 cut(s)	205, 551, 592, 736, 949, 964
CspCI	CAANNNNNGTGG	2 cut(s)	39, 74
CviAII	CATG	2 cut(s)	202, 667
CviQI	GTAC	6 cut(s)	205, 551, 592, 736, 949, 964
DdeI	CTNAG	2 cut(s)	324, 444
DpnI	GATC	5 cut(s)	315, 390, 636, 783, 998
DpnII	GATC	5 cut(s)	313, 388, 634, 781, 996
DraI	TTTAAA	1 cut(s)	520
DraIII	CACNNNGTG	1 cut(s)	502
EaeI	YGGCCR	3 cut(s)	410, 727, 866
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
EciI	GGCGGA	1 cut(s)	661
Eco130I	CCWWGG	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	119
EcoO109I	RGGNCCY	2 cut(s)	706, 905
EcoRII	CCWGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	2 cut(s)	205, 670
FaiI	YATR	9 cut(s)	203, 402, 483, 660, 668, 750, 897, 899, 975
FaqI	GGGAC	3 cut(s)	89, 609, 674
FatI	CATG	2 cut(s)	201, 666
FauI	CCCGC	2 cut(s)	624, 635
FbaI	TGATCA	1 cut(s)	781
FblI	GTMKAC	1 cut(s)	978
Fnu4HI	GCNGC	2 cut(s)	86, 824
FokI	GGATG	1 cut(s)	755
Fsp4HI	GCNGC	2 cut(s)	86, 824
FspBI	CTAG	2 cut(s)	365, 764
GluI	GCNGC	2 cut(s)	86, 824
HaeIII	GGCC	9 cut(s)	185, 239, 257, 412, 442, 708, 729, 868, 907
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	2 cut(s)	205, 670
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	5 cut(s)	93, 448, 490, 858, 937
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	5 cut(s)	88, 590, 670, 791, 902
Hpy166II	GTNNAC	4 cut(s)	217, 304, 592, 979
Hpy188I	TCNGA	3 cut(s)	76, 263, 318
Hpy188III	TCNNGA	3 cut(s)	20, 214, 878
Hpy8I	GTNNAC	4 cut(s)	217, 304, 592, 979
Hpy99I	CGWCG	2 cut(s)	263, 701
HpyAV	CCTTC	5 cut(s)	352, 362, 426, 559, 605
HpyCH4III	ACNGT	4 cut(s)	103, 115, 525, 838
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	4 cut(s)	35, 253, 485, 826
HpyF10VI	GCNNNNNNNGC	1 cut(s)	726
HpyF3I	CTNAG	2 cut(s)	324, 444
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	2 cut(s)	205, 670
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	5 cut(s)	313, 388, 634, 781, 996
Lsp1109I	GCAGC	2 cut(s)	97, 810
MaeI	CTAG	2 cut(s)	365, 764
MaeII	ACGT	1 cut(s)	699
MalI	GATC	5 cut(s)	315, 390, 636, 783, 998
MboI	GATC	5 cut(s)	313, 388, 634, 781, 996
MboII	GAAGA	4 cut(s)	169, 385, 488, 574
MflI	RGATCY	2 cut(s)	313, 996
MhlI	GDGCHC	1 cut(s)	128
MlsI	TGGCCA	3 cut(s)	412, 729, 868
MluCI	AATT	2 cut(s)	603, 607
MluNI	TGGCCA	3 cut(s)	412, 729, 868
MmeI	TCCRAC	1 cut(s)	241
Mox20I	TGGCCA	3 cut(s)	412, 729, 868
MscI	TGGCCA	3 cut(s)	412, 729, 868
MseI	TTAA	3 cut(s)	426, 519, 606
MslI	CAYNNNNRTG	1 cut(s)	777
Msp20I	TGGCCA	3 cut(s)	412, 729, 868
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	90, 108
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	726
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	5 cut(s)	313, 388, 634, 781, 996
NlaIII	CATG	2 cut(s)	205, 670
NlaIV	GGNNCC	1 cut(s)	882
NmeAIII	GCCGAG	1 cut(s)	746
NspI	RCATGY	2 cut(s)	205, 670
OliI	CACNNNNGTG	1 cut(s)	777
PaeR7I	CTCGAG	1 cut(s)	119
PciI	ACATGT	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 693
PfeI	GAWTC	5 cut(s)	93, 448, 490, 858, 937
PkrI	GCNGC	2 cut(s)	87, 825
PscI	ACATGT	1 cut(s)	666
PshBI	ATTAAT	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	882
PspPI	GGNCC	2 cut(s)	706, 905
PspXI	VCTCGAGB	1 cut(s)	119
PsrI	GAACNNNNNNTAC	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	313, 996
RsaI	GTAC	6 cut(s)	206, 552, 593, 737, 950, 965
RsaNI	GTAC	6 cut(s)	205, 551, 592, 736, 949, 964
RseI	CAYNNNNRTG	1 cut(s)	777
SaqAI	TTAA	3 cut(s)	426, 519, 606
SatI	GCNGC	2 cut(s)	86, 824
Sau3AI	GATC	5 cut(s)	313, 388, 634, 781, 996
Sau96I	GGNCC	2 cut(s)	706, 905
ScrFI	CCNGG	2 cut(s)	90, 108
SduI	GDGCHC	1 cut(s)	128
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	777
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	603, 607
SsiI	CCGC	4 cut(s)	284, 617, 628, 672
SspMI	CTAG	2 cut(s)	365, 764
StyD4I	CCNGG	2 cut(s)	88, 106
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	4 cut(s)	103, 115, 525, 838
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	2 cut(s)	120, 180
TasI	AATT	2 cut(s)	603, 607
TatI	WGTACW	3 cut(s)	550, 948, 963
TfiI	GAWTC	5 cut(s)	93, 448, 490, 858, 937
Tru1I	TTAA	3 cut(s)	426, 519, 606
Tru9I	TTAA	3 cut(s)	426, 519, 606
TscAI	CASTG	4 cut(s)	63, 737, 843, 876
TseI	GCWGC	2 cut(s)	85, 823
TspDTI	ATGAA	2 cut(s)	55, 489
TspGWI	ACGGA	3 cut(s)	319, 357, 677
TspRI	CASTG	4 cut(s)	63, 737, 843, 876
VspI	ATTAAT	1 cut(s)	606
XceI	RCATGY	2 cut(s)	205, 670
XhoI	CTCGAG	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	978
XspI	CTAG	2 cut(s)	365, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.