Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005524

Physical Location & Seq

Genomic Coordinates Forward (+)

3520948 .. 3521951

Gene Structure 1004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010679

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCGCAAGTATCTTAAGTTTTTAGAGTCGAGTGATTGTCTTAACGTACAACTACAATATGCAGGAGAACGAGTTCAGAGTAATTGGGCTCGGCTGGTGCTGGCTCCATGGTTAGTAGTGATTCTAGTAGTAACAGCCACTTTCACAGCAAGCCTCACTTCCATGATGACCATCTCTCGAGTCCAGCCATCTGTGCTCAATGTGGAAACACTGAAGAAAGAAAATGGGACTGTTGGATGTAATGGAAACTCTTTTATTGTAAGGTACTTGATCGATGTTCTAGAGTTCAGACCAGAAAACATCAAGAGAATTTCCTCCGTAAGTGACTACCCAAAGGCCTTCCAGAATGGAGATATTCAAGCAGCTTTCTTCGTCGCCCCCCATGCTAAAGTCTTTCTCGCATGTTACTGCAAGGGCTATATGAAAGCAGGTCCTATATACAAGCCTAGCGGCTTTGCATTTGTTTTTCCAAAGGGATCTCCCCTGGCCATTGACCTGTCAAAGGCAATCCTAGATGTAAACGAGAAGAAGCAAGTGGAGCTATTAGAAAAACAAATGCTCTCCTCCTTTAACTGCTCCACTTCACTCAACTTGCAAGATGGTCCAATAGGTTATGAGCCCTTTTCCGGCCTATTTCTAATTTCAGGTTTGGTTTGTGCATTTGCTCTATTGGTTACGAGTGGGCGTATCGCCGGTAGACATCTGCAGAATATGAGCTGCATACGAGCAATACTAATGAAAACAGGAATTCTAAGATGGGCTTTTATGTACTTGATTCAGAGCTGCAGAAAATCTCAAAAGCTTTGCTCCACAACCTCCATCCTGGAAACTTGCTCTACAAGGAACATGAGCAGTGGTGGTGATATAGTGATTATCACGCACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

296

Amino Acids

32.7

Weight (kDa)

9.29

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lig_chan	PF00060	21 - 217	2.6e-13	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34370
malus_domestica	MD15G1082100.v1.1
prunus_persica	Prupe.1G434800_v2.0.a1
pyrus_communis	pycom15g07690
rosa_chinensis	RchiOBHm_Chr6g0308001 RchiOBHm_Chr6g0308011
rosa_laevigata	RLG00000010676 RLG00000010677 RLG00000010678 RLG00000010679
rosa_multiflora	Rmu_sc0006237.1_g000009 Rmu_sc0006237.1_g000010
rosa_roxburghii	Rroxscaffold_7G00160680 Rroxscaffold_7G00160690
rosa_rugosa	Rorug06G0362900 Rorug06G0363000
rosa_samantha	Rh6BG482500 Rh6BG482700 Rh6CG487800 Rh6CG488000 Rh6DG474100 Rh6DG474200
rosa_wichuraiana	Rw6G041170 Rw6G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	419
AccI	GTMKAC	1 cut(s)	697
AciI	CCGC	1 cut(s)	450
AclWI	GGATC	1 cut(s)	484
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	2 cut(s)	309, 747
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	3 cut(s)	48, 266, 770
AfiI	CCNNNNNNNGG	2 cut(s)	502, 626
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	359
AjnI	CCWGG	2 cut(s)	483, 822
AloI	GAACNNNNNNTCC	2 cut(s)	57, 89
AluBI	AGCT	5 cut(s)	365, 541, 717, 783, 802
AluI	AGCT	5 cut(s)	365, 541, 717, 783, 802
Alw21I	GWGCWC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	484
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	3 cut(s)	336, 486, 628
ApeKI	GCWGC	3 cut(s)	362, 717, 783
ApoI	RAATTY	2 cut(s)	309, 747
Asp700I	GAANNNNTTC	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	431, 602
AsuHPI	GGTGA	1 cut(s)	872
AvaI	CYCGRG	1 cut(s)	177
AvaII	GGWCC	2 cut(s)	431, 602
BalI	TGGCCA	1 cut(s)	488
BanII	GRGCYC	2 cut(s)	91, 621
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	374, 704, 770
BccI	CCATC	5 cut(s)	179, 196, 593, 750, 827
BciT130I	CCWGG	2 cut(s)	485, 824
BfaI	CTAG	4 cut(s)	125, 281, 447, 512
BfmI	CTRYAG	2 cut(s)	704, 784
BfrI	CTTAAG	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	419
BisI	GCNGC	4 cut(s)	363, 451, 718, 784
BlsI	GCNGC	4 cut(s)	364, 452, 719, 785
Bme1390I	CCNGG	2 cut(s)	485, 824
Bme18I	GGWCC	2 cut(s)	431, 602
BmeT110I	CYCGRG	1 cut(s)	177
BmgT120I	GGNCC	2 cut(s)	431, 602
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	485, 824
Bsa29I	ATCGAT	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	107, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	2 cut(s)	502, 626
Bse118I	RCCGGY	1 cut(s)	692
Bse1I	ACTGG	1 cut(s)	883
Bse8I	GATNNNNATC	1 cut(s)	170
BseBI	CCWGG	2 cut(s)	485, 824
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	107, 483
BseGI	GGATG	2 cut(s)	242, 819
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	2 cut(s)	502, 626
BseNI	ACTGG	1 cut(s)	883
BseRI	GAGGAG	1 cut(s)	553
BseXI	GCAGC	3 cut(s)	374, 704, 770
BshFI	GGCC	3 cut(s)	338, 488, 630
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	627, 693
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	502, 626
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	3 cut(s)	338, 488, 630
BsoBI	CYCGRG	1 cut(s)	177
Bsp1286I	GDGCHC	3 cut(s)	91, 198, 621
Bsp143I	GATC	2 cut(s)	270, 476
Bsp19I	CCATGG	1 cut(s)	107
BspACI	CCGC	1 cut(s)	450
BspANI	GGCC	3 cut(s)	338, 488, 630
BspDI	ATCGAT	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	2 cut(s)	708, 788
BspMI	ACCTGC	1 cut(s)	419
BspPI	GGATC	1 cut(s)	484
BspTI	CTTAAG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	692
BsrI	ACTGG	1 cut(s)	883
BssAI	RCCGGY	1 cut(s)	692
BssECI	CCNNGG	2 cut(s)	107, 483
BssMI	GATC	2 cut(s)	270, 476
BssT1I	CCWWGG	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	485, 824
Bst4CI	ACNGT	1 cut(s)	232
BstAFI	CTTAAG	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	102, 151
BstDEI	CTNAG	1 cut(s)	752
BstDSI	CCRYGG	1 cut(s)	107
BstENI	CCTNNNNNAGG	1 cut(s)	500
BstF5I	GGATG	2 cut(s)	242, 819
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	273, 479
BstMBI	GATC	2 cut(s)	270, 476
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 383, 538
BstNI	CCWGG	2 cut(s)	485, 824
BstNSI	RCATGY	1 cut(s)	405
BstSCI	CCNGG	2 cut(s)	483, 822
BstSFI	CTRYAG	2 cut(s)	704, 784
BstV1I	GCAGC	3 cut(s)	374, 704, 770
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	3 cut(s)	338, 488, 630
BsuTUI	ATCGAT	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	242, 819
BtsI	GCAGTG	1 cut(s)	859
BtsIMutI	CAGTG	2 cut(s)	209, 859
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	102, 151
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	692
Cfr13I	GGNCC	2 cut(s)	431, 602
ClaI	ATCGAT	1 cut(s)	273
Csp6I	GTAC	3 cut(s)	47, 265, 769
CviAII	CATG	5 cut(s)	108, 163, 383, 402, 847
CviQI	GTAC	3 cut(s)	47, 265, 769
DdeI	CTNAG	1 cut(s)	752
DpnI	GATC	2 cut(s)	272, 478
DpnII	GATC	2 cut(s)	270, 476
EaeI	YGGCCR	1 cut(s)	486
Eco130I	CCWWGG	1 cut(s)	107
Eco147I	AGGCCT	1 cut(s)	338
Eco24I	GRGCYC	2 cut(s)	91, 621
Eco47I	GGWCC	2 cut(s)	431, 602
Eco57I	CTGAAG	1 cut(s)	233
Eco88I	CYCGRG	1 cut(s)	177
EcoNI	CCTNNNNNAGG	1 cut(s)	500
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	747
EcoRII	CCWGG	2 cut(s)	483, 822
EcoT14I	CCWWGG	1 cut(s)	107
EcoT38I	GRGCYC	2 cut(s)	91, 621
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	5 cut(s)	111, 166, 386, 405, 850
FalI	AAGNNNNNCTT	4 cut(s)	142, 174, 745, 777
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	5 cut(s)	107, 162, 382, 401, 846
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	4 cut(s)	363, 451, 718, 784
FokI	GGATG	2 cut(s)	249, 806
FriOI	GRGCYC	2 cut(s)	91, 621
Fsp4HI	GCNGC	4 cut(s)	363, 451, 718, 784
FspBI	CTAG	4 cut(s)	125, 281, 447, 512
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	4 cut(s)	363, 451, 718, 784
HaeIII	GGCC	3 cut(s)	338, 488, 630
HapII	CCGG	2 cut(s)	627, 693
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	5 cut(s)	111, 166, 386, 405, 850
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	1 cut(s)	800
HinfI	GANTC	4 cut(s)	26, 121, 180, 775
HpaII	CCGG	2 cut(s)	627, 693
HphI	GGTGA	1 cut(s)	872
Hpy166II	GTNNAC	2 cut(s)	520, 698
Hpy188I	TCNGA	3 cut(s)	78, 290, 780
Hpy188III	TCNNGA	4 cut(s)	177, 281, 304, 343
Hpy8I	GTNNAC	2 cut(s)	520, 698
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	8 cut(s)	62, 411, 458, 595, 659, 706, 720, 786
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 383, 538
HpyF3I	CTNAG	1 cut(s)	752
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	5 cut(s)	111, 166, 386, 405, 850
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	270, 476
LmnI	GCTCC	4 cut(s)	109, 538, 581, 812
Lsp1109I	GCAGC	3 cut(s)	374, 704, 770
MaeI	CTAG	4 cut(s)	125, 281, 447, 512
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	4 cut(s)	130, 323, 404, 673
MalI	GATC	2 cut(s)	272, 478
MboI	GATC	2 cut(s)	270, 476
MboII	GAAGA	3 cut(s)	226, 361, 538
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	3 cut(s)	91, 198, 621
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	4 cut(s)	82, 309, 639, 747
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	2 cut(s)	35, 189
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	4 cut(s)	164, 325, 574, 826
Mox20I	TGGCCA	1 cut(s)	488
MroXI	GAANNNNTTC	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	3 cut(s)	15, 42, 570
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	488
MspCI	CTTAAG	1 cut(s)	14
MspI	CCGG	2 cut(s)	627, 693
MspR9I	CCNGG	2 cut(s)	485, 824
MvaI	CCWGG	2 cut(s)	485, 824
MwoI	GCNNNNNNNGC	3 cut(s)	193, 383, 538
NcoI	CCATGG	1 cut(s)	107
NdeII	GATC	2 cut(s)	270, 476
NlaIII	CATG	5 cut(s)	111, 166, 386, 405, 850
NlaIV	GGNNCC	1 cut(s)	105
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	323
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	405
PaeR7I	CTCGAG	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	121, 775
PfoI	TCCNGGA	1 cut(s)	822
PkrI	GCNGC	4 cut(s)	364, 452, 719, 785
PleI	GAGTC	2 cut(s)	34, 188
PpsI	GAGTC	2 cut(s)	34, 188
PpuMI	RGGWCCY	1 cut(s)	431
Psp5II	RGGWCCY	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	483, 822
PspGI	CCWGG	2 cut(s)	483, 822
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	431, 602
PspPPI	RGGWCCY	1 cut(s)	431
PstI	CTGCAG	2 cut(s)	708, 788
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	3 cut(s)	48, 266, 770
RsaNI	GTAC	3 cut(s)	47, 265, 769
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	15, 42, 570
SatI	GCNGC	4 cut(s)	363, 451, 718, 784
Sau3AI	GATC	2 cut(s)	270, 476
Sau96I	GGNCC	2 cut(s)	431, 602
SchI	GAGTC	2 cut(s)	35, 189
ScrFI	CCNGG	2 cut(s)	485, 824
SduI	GDGCHC	3 cut(s)	91, 198, 621
SfcI	CTRYAG	2 cut(s)	704, 784
Sfr274I	CTCGAG	1 cut(s)	177
SinI	GGWCC	2 cut(s)	431, 602
SlaI	CTCGAG	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	2 cut(s)	14, 177
SmoI	CTYRAG	2 cut(s)	14, 177
Sse9I	AATT	4 cut(s)	82, 309, 639, 747
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	1 cut(s)	450
SspMI	CTAG	4 cut(s)	125, 281, 447, 512
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	2 cut(s)	483, 822
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	3 cut(s)	29, 178, 273
TasI	AATT	4 cut(s)	82, 309, 639, 747
TatI	WGTACW	1 cut(s)	768
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	2 cut(s)	121, 775
Tru1I	TTAA	3 cut(s)	15, 42, 570
Tru9I	TTAA	3 cut(s)	15, 42, 570
TscAI	CASTG	2 cut(s)	216, 859
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	3 cut(s)	362, 717, 783
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	437, 752
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	2 cut(s)	216, 859
Vha464I	CTTAAG	1 cut(s)	14
VpaK11BI	GGWCC	2 cut(s)	431, 602
XagI	CCTNNNNNAGG	1 cut(s)	500
XapI	RAATTY	2 cut(s)	309, 747
XbaI	TCTAGA	1 cut(s)	280
XceI	RCATGY	1 cut(s)	405
XhoI	CTCGAG	1 cut(s)	177
XmiI	GTMKAC	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	4 cut(s)	125, 281, 447, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.