Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005524

Physical Location & Seq

Genomic Coordinates Reverse (-)

64018534 .. 64021543

Gene Structure 3010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG474200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2517 bp

ATGGGAGCTGTAGTTGATTTCACCTCTCGTGTGGGAAAAGAACAGAGGATAGCTATGGATTTGGCTATCCAAGACCTTCTTCACTCGAACTGCCTTACAGTAAATTTAGATCTCCGAGATTCACAGGGAAGTACAGCTAAATCAACTGCTGCTGCAATCAATCTTCTGAATGGCAAACAAGTTGAAGCCATCATTGGAACACTGACAATGCAAGAAGCAGCTCTTGTCTCTGAGATTGATAATCAAACCGGAAACTTCACCATTTTATCGCTTGCTTCACCTGCCATAAACCCACCATCAGCCTCACTTCAAATGCCAAATTTTCTCCAAGTAGCAAATGACATTGTTATCCATATGCAATGCTTGGCAGCCTTAGTCGGTCATTTTCAATGGAGAAAGGTGACTGCGATTTATGAACAAAAGAGTGATTTTTCCTACAATTCTGGAATGATAACCCTCCTCTCCGATTCACTTAAATTAGTCAACTCAGAGATTGAGCACCACCAAGCTTTCCCAACCCTCTCTTCTCTCTCTGATCCAAATTCCTTTTTCGATGAAGAGCTGAAGAAGTTGAGGAACAAAAGCAACAGGGTTTTCATACTTACCCAGTTCTCTTTAAATTCAGCTGTTTTTCTCTTTGGAAAGGCAAAGGAAACGGGGATGATGGGCAAAGGCTATGTATGGATTGTCACAGATGAGATTGCAAGTCTTCTTGACTCTGTTGATTCTTCTATCAAGTACAATATGCAAGGTGTTATTGGTATTAAAACCAACTTCATAGAAATAAGTACAACCAACAATTTCGCGAAATTCAAAACCAGATTTCGCAGACTATATGGACTGCAATACCCTGAAGAAGAAGAAAACTCTAGCCCTAGCATCTTTGCTCTTCGAACGTATGACGCAATGCAGGCCATGGCTCTAGCCATGAAATATGCTACCTCAAAACATTTGTCTCAAGAAATTGTGTCCACCAAATTCCAAGGTCTAAGTGGCATGATGGAGTTCAAGAATGGCATGCTATCACAACAACCAACCTTTCAAATCATTAATGTGTTTGGCAGAAGCTACAGCGAGATTGCGTTCTGGTCAACACGCTTTGGTTTCTCAGAGGACATGAACGTTGATATGAAGGAGAGGACTAATCACAATTATGTTCAAGTTTTGGGTCCAATCAACTGGCCAGGTGGCTTACAAGCACCTCCAAAGGGGTGGACTCTTGTCGATGGAGAGAGACCGTTGAAGATTGGGATTCCAGCGAGGGGTGCCTTCAATCAATTTGTGAAAGTAACGTATGACCAGGACAAGAATCAGACACACATCTCAGGGTTTTCAATTGATATCTTCGAAGCAGTTGTGAAAAACCTGCCTTATCAGTTGCCTTATGTGTTTGTTCCCTTCAATGGCTCATATGATGAATTGGTGGAACAGGTCTACTACAAGGGTTTGGATGCAGCTGTTGGTGATATAGAAGTCATAGCTGACCGGTATCATTATGTTGAGTTCTCACAACCATATATAAGCTCTGGACTTCAGATGGTAGTCACTGTAAAGCCAGATAAGCTGAAGGAAAAATGGATGTTCATGAATGCCTTCAGCAAAAGCATGTGGTTGCTCATGATCACTACGCACCTTTCTGTATGCTTTGTTGTCTGGTTTATTGAATGCGAACATGGGCAAAACTTTGAATTAGAAGGAATTGGGGCCATCCTGTGGTTCTCTGTCACCGTCTTATTCTTCGTGCAAAGAGAACGAGTTCAGAGTAATTGGGCTCGGCTGGTGCTGGCTCCATGGTTAGTAGTGATTCTAGTAGTAACAGCCACTTTCACAGCGAGCCTCACTTCCATGATGACCATCTCTCGAGTCCAGCCATCTGTGCTCAATGTGGAAACACTTAAGAAAGAAAATGGAACTGTTGGATGTAATGGCAAATCTTTTATTATTAGGTACCTCATCAATGTTCTAGAGTTCAGACCAGAAAACATCAAGAGAATTGCCTCCATAAGTGACTACCCAAAGGCCTTCCAGAATGGAGATATTCAAGCAGCTTTCTTCGTCGCCCCCCATGCTAAAGTCTTCCTGGCATGTTACTGCAAGGGCTATATGAAGACAGGTCCTATATACAAGCCTAGCGGCTTTGCATTTGCTTTTCCAAAGGGGTCTCCTCTGGCCATTGAAATGTCAAAGGCAATCCTACATGTAAATGAGAAGAAGCAAGTAGAGCTATTAGAAAAACAAATGCTCTCCTCCTTTAACTGCTCCCCTGCACTGAACTTGAAAGATGGTCCAATTGGTTATGAGCCCTTTTCCGGCCTATTTCTAATTTCAGGTTTGGTTTGTGCATTTGCCCTATTGGTTACGAGTGGGCGTATGGCCGGTAGACATCTGCAGAATATGAGCAGCACACTAGCAATACTAACGAAAACAGGAATTCTAAGATGGGCTTTTATGTACTTGATTCAGAGCTGCAGAAAATCTCAAAAGCATTGCTCTACAACCTCCATCCTGGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

838

Amino Acids

93.86

Weight (kDa)

8.4

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	11 - 333	1.8e-09	Periplasmic binding protein
ANF_receptor	PF01094	17 - 352	8.1e-41	Receptor family ligand binding region
SBP_bac_3	PF00497	430 - 744	1.4e-09	Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd	PF10613	433 - 516	5.7e-06	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	534 - 778	3e-19	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34370
malus_domestica	MD15G1082100.v1.1
prunus_persica	Prupe.1G434800_v2.0.a1
pyrus_communis	pycom15g07690
rosa_chinensis	RchiOBHm_Chr6g0308001 RchiOBHm_Chr6g0308011
rosa_laevigata	RLG00000010676 RLG00000010677 RLG00000010678 RLG00000010679
rosa_multiflora	Rmu_sc0006237.1_g000009 Rmu_sc0006237.1_g000010
rosa_roxburghii	Rroxscaffold_7G00160680 Rroxscaffold_7G00160690
rosa_rugosa	Rorug06G0362900 Rorug06G0363000
rosa_samantha	Rh6BG482500 Rh6BG482700 Rh6CG487800 Rh6CG488000 Rh6DG474100 Rh6DG474200
rosa_wichuraiana	Rw6G041170 Rw6G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	289
Acc36I	ACCTGC	2 cut(s)	289, 1374
Acc65I	GGTACC	1 cut(s)	1947
AccB1I	GGYRCC	2 cut(s)	1265, 1947
AccB7I	CCANNNNNTGG	1 cut(s)	1713
AccI	GTMKAC	2 cut(s)	1434, 2380
AccII	CGCG	1 cut(s)	806
AciI	CCGC	1 cut(s)	2133
AclI	AACGTT	1 cut(s)	1122
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	3 cut(s)	1181, 2169, 2373
AcsI	RAATTY	7 cut(s)	103, 319, 541, 619, 809, 977, 2430
AcuI	CTGAAG	5 cut(s)	584, 873, 1517, 1579, 1586
AfaI	GTAC	5 cut(s)	133, 740, 790, 1949, 2453
AfiI	CCNNNNNNNGG	5 cut(s)	1208, 1262, 1403, 1713, 2309
AflII	CTTAAG	1 cut(s)	1895
AflIII	ACRYGT	1 cut(s)	2197
AgeI	ACCGGT	1 cut(s)	1485
AjnI	CCWGG	4 cut(s)	1183, 1299, 2079, 2505
AjuI	GAANNNNNNNTTGG	6 cut(s)	63, 95, 177, 209, 508, 540
Alw21I	GWGCWC	2 cut(s)	501, 1881
Alw26I	GTCTC	4 cut(s)	232, 960, 1228, 2166
AlwI	GGATC	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	1860
AoxI	GGCC	7 cut(s)	912, 1181, 1704, 2019, 2169, 2311, 2373
ApeKI	GCWGC	8 cut(s)	149, 152, 218, 368, 1454, 2045, 2400, 2466
ApoI	RAATTY	7 cut(s)	103, 319, 541, 619, 809, 977, 2430
ArsI	GACNNNNNNTTYG	2 cut(s)	938, 970
AseI	ATTAAT	1 cut(s)	1050
AsiGI	ACCGGT	1 cut(s)	1485
Asp700I	GAANNNNTTC	2 cut(s)	1592, 1755
Asp718I	GGTACC	1 cut(s)	1947
AspS9I	GGNCC	4 cut(s)	1169, 1704, 2114, 2285
AsuHPI	GGTGA	6 cut(s)	13, 250, 270, 412, 1475, 1717
AsuII	TTCGAA	2 cut(s)	892, 1347
AvaI	CYCGRG	1 cut(s)	1860
AvaII	GGWCC	3 cut(s)	1169, 2114, 2285
BalI	TGGCCA	2 cut(s)	1183, 2171
BanI	GGYRCC	2 cut(s)	1265, 1947
BanII	GRGCYC	2 cut(s)	1774, 2304
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	3 cut(s)	701, 2068, 2114
Bbv12I	GWGCWC	2 cut(s)	501, 1881
BbvI	GCAGC	8 cut(s)	136, 139, 230, 380, 1466, 2057, 2412, 2453
BciT130I	CCWGG	4 cut(s)	1185, 1301, 2081, 2507
BclI	TGATCA	1 cut(s)	1620
BcoDI	GTCTC	4 cut(s)	232, 960, 1228, 2166
BfaI	CTAG	7 cut(s)	870, 876, 923, 1808, 1964, 2130, 2408
BfmI	CTRYAG	4 cut(s)	9, 1069, 2387, 2467
BfrI	CTTAAG	1 cut(s)	1895
BfuAI	ACCTGC	2 cut(s)	289, 1374
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	9 cut(s)	150, 153, 219, 369, 1455, 2046, 2134, 2401, 2467
BlsI	GCNGC	9 cut(s)	151, 154, 220, 370, 1456, 2047, 2135, 2402, 2468
Bme1390I	CCNGG	4 cut(s)	1185, 1301, 2081, 2507
Bme18I	GGWCC	3 cut(s)	1169, 2114, 2285
BmeT110I	CYCGRG	1 cut(s)	1860
BmgT120I	GGNCC	4 cut(s)	1169, 1704, 2114, 2285
BmiI	GGNNCC	5 cut(s)	1170, 1267, 1705, 1788, 1949
BmrFI	CCNGG	4 cut(s)	1185, 1301, 2081, 2507
BmrI	ACTGGG	1 cut(s)	601
BmsI	GCATC	2 cut(s)	888, 1441
BmuI	ACTGGG	1 cut(s)	601
BoxI	GACNNNNGTC	1 cut(s)	1220
BpiI	GAAGAC	3 cut(s)	701, 2068, 2114
Bpu14I	TTCGAA	2 cut(s)	892, 1347
BpuEI	CTTGAG	1 cut(s)	942
BsaBI	GATNNNNATC	1 cut(s)	1853
BsaI	GGTCTC	2 cut(s)	1228, 2166
BsaJI	CCNNGG	3 cut(s)	915, 982, 1790
BsaWI	WCCGGW	2 cut(s)	248, 1485
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	5 cut(s)	1208, 1262, 1403, 1713, 2309
Bse118I	RCCGGY	2 cut(s)	1485, 2375
Bse1I	ACTGG	2 cut(s)	607, 1184
Bse3DI	GCAATG	3 cut(s)	365, 912, 2485
Bse8I	GATNNNNATC	1 cut(s)	1853
BseBI	CCWGG	4 cut(s)	1185, 1301, 2081, 2507
BseDI	CCNNGG	3 cut(s)	915, 982, 1790
BseGI	GGATG	6 cut(s)	666, 1456, 1584, 1707, 1925, 2502
BseJI	GATNNNNATC	1 cut(s)	1853
BseLI	CCNNNNNNNGG	5 cut(s)	1208, 1262, 1403, 1713, 2309
BseMI	GCAATG	3 cut(s)	365, 912, 2485
BseMII	CTCAG	4 cut(s)	222, 501, 1122, 1338
BseNI	ACTGG	2 cut(s)	607, 1184
BseRI	GAGGAG	3 cut(s)	449, 2154, 2236
BseXI	GCAGC	8 cut(s)	136, 139, 230, 380, 1466, 2057, 2412, 2453
BsgI	GTGCAG	1 cut(s)	2250
Bsh1236I	CGCG	1 cut(s)	806
BshFI	GGCC	7 cut(s)	914, 1183, 1706, 2021, 2171, 2313, 2375
BshNI	GGYRCC	2 cut(s)	1265, 1947
BshTI	ACCGGT	1 cut(s)	1485
BsiHKAI	GWGCWC	2 cut(s)	501, 1881
BsiHKCI	CYCGRG	1 cut(s)	1860
BsiSI	CCGG	4 cut(s)	249, 1486, 2310, 2376
BslI	CCNNNNNNNGG	5 cut(s)	1208, 1262, 1403, 1713, 2309
BsmAI	GTCTC	4 cut(s)	232, 960, 1228, 2166
BsmI	GAATGC	2 cut(s)	1594, 1670
BsnI	GGCC	7 cut(s)	914, 1183, 1706, 2021, 2171, 2313, 2375
Bso31I	GGTCTC	2 cut(s)	1228, 2166
BsoBI	CYCGRG	1 cut(s)	1860
Bsp119I	TTCGAA	2 cut(s)	892, 1347
Bsp1286I	GDGCHC	4 cut(s)	501, 1774, 1881, 2304
Bsp143I	GATC	3 cut(s)	109, 535, 1620
Bsp19I	CCATGG	2 cut(s)	915, 1790
Bsp68I	TCGCGA	1 cut(s)	806
BspACI	CCGC	1 cut(s)	2133
BspANI	GGCC	7 cut(s)	914, 1183, 1706, 2021, 2171, 2313, 2375
BspCNI	CTCAG	4 cut(s)	223, 500, 1121, 1337
BspFNI	CGCG	1 cut(s)	806
BspHI	TCATGA	2 cut(s)	1584, 1617
BspLI	GGNNCC	5 cut(s)	1170, 1267, 1705, 1788, 1949
BspMAI	CTGCAG	2 cut(s)	2391, 2471
BspMI	ACCTGC	2 cut(s)	289, 1374
BspPI	GGATC	1 cut(s)	530
BspQI	GCTCTTC	2 cut(s)	552, 894
BspT104I	TTCGAA	2 cut(s)	892, 1347
BspT107I	GGYRCC	2 cut(s)	1265, 1947
BspTI	CTTAAG	1 cut(s)	1895
BspTNI	GGTCTC	2 cut(s)	1228, 2166
BsrDI	GCAATG	3 cut(s)	365, 912, 2485
BsrFI	RCCGGY	2 cut(s)	1485, 2375
BsrI	ACTGG	2 cut(s)	607, 1184
BssAI	RCCGGY	2 cut(s)	1485, 2375
BssECI	CCNNGG	3 cut(s)	915, 982, 1790
BssMI	GATC	3 cut(s)	109, 535, 1620
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	3 cut(s)	915, 982, 1790
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	4 cut(s)	1185, 1301, 2081, 2507
Bst4CI	ACNGT	5 cut(s)	100, 1239, 1549, 1729, 1915
Bst6I	CTCTTC	3 cut(s)	529, 552, 894
BstAFI	CTTAAG	1 cut(s)	1895
BstBI	TTCGAA	2 cut(s)	892, 1347
BstC8I	GCNNGC	5 cut(s)	273, 912, 1019, 1785, 1834
BstDEI	CTNAG	7 cut(s)	231, 373, 487, 989, 1108, 1324, 2435
BstDSI	CCRYGG	2 cut(s)	915, 1790
BstF5I	GGATG	6 cut(s)	666, 1456, 1584, 1707, 1925, 2502
BstFNI	CGCG	1 cut(s)	806
BstKTI	GATC	3 cut(s)	112, 538, 1623
BstMAI	GTCTC	4 cut(s)	232, 960, 1228, 2166
BstMBI	GATC	3 cut(s)	109, 535, 1620
BstMWI	GCNNNNNNNGC	7 cut(s)	281, 911, 1265, 1561, 1876, 2066, 2221
BstNI	CCWGG	4 cut(s)	1185, 1301, 2081, 2507
BstNSI	RCATGY	4 cut(s)	1021, 1609, 2088, 2201
BstPAI	GACNNNNGTC	1 cut(s)	1220
BstSCI	CCNGG	4 cut(s)	1183, 1299, 2079, 2505
BstSFI	CTRYAG	4 cut(s)	9, 1069, 2387, 2467
BstUI	CGCG	1 cut(s)	806
BstV1I	GCAGC	8 cut(s)	136, 139, 230, 380, 1466, 2057, 2412, 2453
BstV2I	GAAGAC	3 cut(s)	701, 2068, 2114
BstX2I	RGATCY	1 cut(s)	109
BstXI	CCANNNNNNTGG	2 cut(s)	1179, 1212
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	7 cut(s)	914, 1183, 1706, 2021, 2171, 2313, 2375
BtgI	CCRYGG	2 cut(s)	915, 1790
BtsCI	GGATG	6 cut(s)	666, 1456, 1584, 1707, 1925, 2502
BtsIMutI	CAGTG	3 cut(s)	200, 1545, 2267
BtuMI	TCGCGA	1 cut(s)	806
BveI	ACCTGC	2 cut(s)	289, 1374
Cac8I	GCNNGC	5 cut(s)	273, 912, 1019, 1785, 1834
CciI	TCATGA	2 cut(s)	1584, 1617
Cfr10I	RCCGGY	2 cut(s)	1485, 2375
Cfr13I	GGNCC	4 cut(s)	1169, 1704, 2114, 2285
CseI	GACGC	1 cut(s)	911
Csp6I	GTAC	5 cut(s)	132, 739, 789, 1948, 2452
CspAI	ACCGGT	1 cut(s)	1485
CviQI	GTAC	5 cut(s)	132, 739, 789, 1948, 2452
DdeI	CTNAG	7 cut(s)	231, 373, 487, 989, 1108, 1324, 2435
DpnI	GATC	3 cut(s)	111, 537, 1622
DpnII	GATC	3 cut(s)	109, 535, 1620
DraI	TTTAAA	1 cut(s)	618
EaeI	YGGCCR	3 cut(s)	1181, 2169, 2373
Eam1104I	CTCTTC	3 cut(s)	529, 552, 894
EarI	CTCTTC	3 cut(s)	529, 552, 894
Eco130I	CCWWGG	3 cut(s)	915, 982, 1790
Eco147I	AGGCCT	1 cut(s)	2021
Eco24I	GRGCYC	2 cut(s)	1774, 2304
Eco31I	GGTCTC	2 cut(s)	1228, 2166
Eco32I	GATATC	1 cut(s)	1342
Eco47I	GGWCC	3 cut(s)	1169, 2114, 2285
Eco57I	CTGAAG	5 cut(s)	584, 873, 1517, 1579, 1586
Eco88I	CYCGRG	1 cut(s)	1860
EcoO109I	RGGNCCY	1 cut(s)	2114
EcoRI	GAATTC	1 cut(s)	2430
EcoRII	CCWGG	4 cut(s)	1183, 1299, 2079, 2505
EcoRV	GATATC	1 cut(s)	1342
EcoT14I	CCWWGG	3 cut(s)	915, 982, 1790
EcoT38I	GRGCYC	2 cut(s)	1774, 2304
ErhI	CCWWGG	3 cut(s)	915, 982, 1790
FalI	AAGNNNNNCTT	6 cut(s)	63, 95, 207, 239, 2428, 2460
FauNDI	CATATG	2 cut(s)	354, 1411
FbaI	TGATCA	1 cut(s)	1620
FblI	GTMKAC	2 cut(s)	1434, 2380
Fnu4HI	GCNGC	9 cut(s)	150, 153, 219, 369, 1455, 2046, 2134, 2401, 2467
FokI	GGATG	6 cut(s)	673, 1463, 1591, 1694, 1932, 2489
FriOI	GRGCYC	2 cut(s)	1774, 2304
Fsp4HI	GCNGC	9 cut(s)	150, 153, 219, 369, 1455, 2046, 2134, 2401, 2467
FspBI	CTAG	7 cut(s)	870, 876, 923, 1808, 1964, 2130, 2408
GluI	GCNGC	9 cut(s)	150, 153, 219, 369, 1455, 2046, 2134, 2401, 2467
HaeIII	GGCC	7 cut(s)	914, 1183, 1706, 2021, 2171, 2313, 2375
HapII	CCGG	4 cut(s)	249, 1486, 2310, 2376
HgaI	GACGC	1 cut(s)	911
HincII	GTYRAC	2 cut(s)	484, 1092
HindII	GTYRAC	2 cut(s)	484, 1092
HindIII	AAGCTT	1 cut(s)	507
HpaII	CCGG	4 cut(s)	249, 1486, 2310, 2376
HphI	GGTGA	6 cut(s)	13, 250, 270, 412, 1475, 1717
Hpy166II	GTNNAC	6 cut(s)	484, 972, 1092, 1215, 1435, 2381
Hpy8I	GTNNAC	6 cut(s)	484, 972, 1092, 1215, 1435, 2381
Hpy99I	CGWCG	1 cut(s)	2060
HpyAV	CCTTC	8 cut(s)	86, 1126, 1279, 1408, 1561, 1603, 1688, 2032
HpyCH4III	ACNGT	5 cut(s)	100, 1239, 1549, 1729, 1915
HpyCH4IV	ACGT	3 cut(s)	896, 1122, 1292
HpyF10VI	GCNNNNNNNGC	7 cut(s)	281, 911, 1265, 1561, 1876, 2066, 2221
HpyF3I	CTNAG	7 cut(s)	231, 373, 487, 989, 1108, 1324, 2435
HpySE526I	ACGT	3 cut(s)	896, 1122, 1292
KpnI	GGTACC	1 cut(s)	1951
Ksp22I	TGATCA	1 cut(s)	1620
Kzo9I	GATC	3 cut(s)	109, 535, 1620
LguI	GCTCTTC	2 cut(s)	552, 894
LmnI	GCTCC	3 cut(s)	5, 1792, 2264
Lsp1109I	GCAGC	8 cut(s)	136, 139, 230, 380, 1466, 2057, 2412, 2453
LweI	GCATC	2 cut(s)	888, 1441
MaeI	CTAG	7 cut(s)	870, 876, 923, 1808, 1964, 2130, 2408
MaeII	ACGT	3 cut(s)	896, 1122, 1292
MaeIII	GTNAC	9 cut(s)	400, 688, 1288, 1543, 1723, 1813, 2006, 2087, 2356
MalI	GATC	3 cut(s)	111, 537, 1622
MboI	GATC	3 cut(s)	109, 535, 1620
MfeI	CAATTG	2 cut(s)	1335, 2289
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	4 cut(s)	501, 1774, 1881, 2304
MlsI	TGGCCA	2 cut(s)	1183, 2171
MluNI	TGGCCA	2 cut(s)	1183, 2171
MlyI	GAGTC	3 cut(s)	710, 1210, 1872
MmeI	TCCRAC	1 cut(s)	1897
Mox20I	TGGCCA	2 cut(s)	1183, 2171
MroXI	GAANNNNTTC	2 cut(s)	1592, 1755
MscI	TGGCCA	2 cut(s)	1183, 2171
MseI	TTAA	6 cut(s)	474, 617, 765, 1050, 1896, 2253
MslI	CAYNNNNRTG	5 cut(s)	1052, 1152, 1844, 2177, 2202
Msp20I	TGGCCA	2 cut(s)	1183, 2171
MspA1I	CMGCKG	2 cut(s)	626, 1457
MspCI	CTTAAG	1 cut(s)	1895
MspI	CCGG	4 cut(s)	249, 1486, 2310, 2376
MspR9I	CCNGG	4 cut(s)	1185, 1301, 2081, 2507
MunI	CAATTG	2 cut(s)	1335, 2289
Mva1269I	GAATGC	2 cut(s)	1594, 1670
MvaI	CCWGG	4 cut(s)	1185, 1301, 2081, 2507
MvnI	CGCG	1 cut(s)	806
MwoI	GCNNNNNNNGC	7 cut(s)	281, 911, 1265, 1561, 1876, 2066, 2221
NcoI	CCATGG	2 cut(s)	915, 1790
NdeI	CATATG	2 cut(s)	354, 1411
NdeII	GATC	3 cut(s)	109, 535, 1620
NlaIV	GGNNCC	5 cut(s)	1170, 1267, 1705, 1788, 1949
NmeAIII	GCCGAG	1 cut(s)	1753
NmuCI	GTSAC	5 cut(s)	400, 688, 1543, 1723, 2006
NruI	TCGCGA	1 cut(s)	806
NspI	RCATGY	4 cut(s)	1021, 1609, 2088, 2201
NspV	TTCGAA	2 cut(s)	892, 1347
PaeI	GCATGC	1 cut(s)	1021
PaeR7I	CTCGAG	1 cut(s)	1860
PagI	TCATGA	2 cut(s)	1584, 1617
PaqCI	CACCTGC	1 cut(s)	289
PceI	AGGCCT	1 cut(s)	2021
PciI	ACATGT	1 cut(s)	2197
PciSI	GCTCTTC	2 cut(s)	552, 894
PctI	GAATGC	2 cut(s)	1594, 1670
PdmI	GAANNNNTTC	2 cut(s)	1592, 1755
PfeI	GAWTC	7 cut(s)	119, 467, 725, 1252, 1309, 1804, 2458
PflMI	CCANNNNNTGG	1 cut(s)	1713
PfoI	TCCNGGA	1 cut(s)	2505
PinAI	ACCGGT	1 cut(s)	1485
PkrI	GCNGC	9 cut(s)	151, 154, 220, 370, 1456, 2047, 2135, 2402, 2468
PleI	GAGTC	3 cut(s)	710, 1210, 1871
PpsI	GAGTC	3 cut(s)	710, 1210, 1871
PpuMI	RGGWCCY	1 cut(s)	2114
PscI	ACATGT	1 cut(s)	2197
PshAI	GACNNNNGTC	1 cut(s)	1220
PshBI	ATTAAT	1 cut(s)	1050
Psp1406I	AACGTT	1 cut(s)	1122
Psp5II	RGGWCCY	1 cut(s)	2114
Psp6I	CCWGG	4 cut(s)	1183, 1299, 2079, 2505
PspGI	CCWGG	4 cut(s)	1183, 1299, 2079, 2505
PspN4I	GGNNCC	5 cut(s)	1170, 1267, 1705, 1788, 1949
PspPI	GGNCC	4 cut(s)	1169, 1704, 2114, 2285
PspPPI	RGGWCCY	1 cut(s)	2114
PstI	CTGCAG	2 cut(s)	2391, 2471
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	2 cut(s)	626, 1457
RruI	TCGCGA	1 cut(s)	806
RsaI	GTAC	5 cut(s)	133, 740, 790, 1949, 2453
RsaNI	GTAC	5 cut(s)	132, 739, 789, 1948, 2452
RseI	CAYNNNNRTG	5 cut(s)	1052, 1152, 1844, 2177, 2202
SapI	GCTCTTC	2 cut(s)	552, 894
SaqAI	TTAA	6 cut(s)	474, 617, 765, 1050, 1896, 2253
SatI	GCNGC	9 cut(s)	150, 153, 219, 369, 1455, 2046, 2134, 2401, 2467
Sau3AI	GATC	3 cut(s)	109, 535, 1620
Sau96I	GGNCC	4 cut(s)	1169, 1704, 2114, 2285
SchI	GAGTC	3 cut(s)	710, 1210, 1872
ScrFI	CCNGG	4 cut(s)	1185, 1301, 2081, 2507
SduI	GDGCHC	4 cut(s)	501, 1774, 1881, 2304
SfaNI	GCATC	2 cut(s)	888, 1441
SfcI	CTRYAG	4 cut(s)	9, 1069, 2387, 2467
Sfr274I	CTCGAG	1 cut(s)	1860
SfuI	TTCGAA	2 cut(s)	892, 1347
SinI	GGWCC	3 cut(s)	1169, 2114, 2285
SlaI	CTCGAG	1 cut(s)	1860
SmiMI	CAYNNNNRTG	5 cut(s)	1052, 1152, 1844, 2177, 2202
SmlI	CTYRAG	3 cut(s)	957, 1860, 1895
SmoI	CTYRAG	3 cut(s)	957, 1860, 1895
SphI	GCATGC	1 cut(s)	1021
SseBI	AGGCCT	1 cut(s)	2021
SsiI	CCGC	1 cut(s)	2133
SspMI	CTAG	7 cut(s)	870, 876, 923, 1808, 1964, 2130, 2408
StuI	AGGCCT	1 cut(s)	2021
StyD4I	CCNGG	4 cut(s)	1183, 1299, 2079, 2505
StyI	CCWWGG	3 cut(s)	915, 982, 1790
TaaI	ACNGT	5 cut(s)	100, 1239, 1549, 1729, 1915
TaiI	ACGT	3 cut(s)	899, 1125, 1295
TaqI	TCGA	6 cut(s)	86, 552, 892, 1224, 1347, 1861
TaqII	GACCGA	1 cut(s)	368
TatI	WGTACW	4 cut(s)	131, 738, 788, 2451
TauI	GCSGC	1 cut(s)	2136
TfiI	GAWTC	7 cut(s)	119, 467, 725, 1252, 1309, 1804, 2458
Tru1I	TTAA	6 cut(s)	474, 617, 765, 1050, 1896, 2253
Tru9I	TTAA	6 cut(s)	474, 617, 765, 1050, 1896, 2253
TscAI	CASTG	3 cut(s)	207, 1552, 2274
TseFI	GTSAC	5 cut(s)	400, 688, 1543, 1723, 2006
TseI	GCWGC	8 cut(s)	149, 152, 218, 368, 1454, 2045, 2400, 2466
Tsp45I	GTSAC	5 cut(s)	400, 688, 1543, 1723, 2006
TspRI	CASTG	3 cut(s)	207, 1552, 2274
Van91I	CCANNNNNTGG	1 cut(s)	1713
Vha464I	CTTAAG	1 cut(s)	1895
VpaK11BI	GGWCC	3 cut(s)	1169, 2114, 2285
VspI	ATTAAT	1 cut(s)	1050
XapI	RAATTY	7 cut(s)	103, 319, 541, 619, 809, 977, 2430
XbaI	TCTAGA	1 cut(s)	1963
XceI	RCATGY	4 cut(s)	1021, 1609, 2088, 2201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	989
XhoI	CTCGAG	1 cut(s)	1860
XmiI	GTMKAC	2 cut(s)	1434, 2380
XmnI	GAANNNNTTC	2 cut(s)	1592, 1755
XspI	CTAG	7 cut(s)	870, 876, 923, 1808, 1964, 2130, 2408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.