Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005524

Physical Location & Seq

Genomic Coordinates Reverse (-)

65572838 .. 65576011

Gene Structure 3174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG487800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2673 bp

ATGTCTTGGGGTCTCTTGGTTTTGCTGTTGCTGGTGAATTCAGCCCTGGCCAATGGAAGAGGGGACAGATGTCAAAAAACCCAACAACACAGAGTTGCAAGAATAGGAGCTGTAGTTGATTTCACTTCTCGTGTGGGCAAAGAACAGAGAATAGCCATGGATTTGGCTATCCAAGACCTTCTTCACTCGAGCTGCCTTACAGTAAACTTAGACCTCAGAGATTCACAAGGCAATTCAGCTAAATCAACTGCTGCTGTAATCAATCTACTTAATGTCAAACAAGTTGAAGCCATCATCGGAACACTGACAAAGCAAGAAGCTGCTCTGGTCTCCGAGATTGACAATCGCAGCCAGAATTTCACCATCATATCGCTTCCTTCCACTGCCATAAATCCACCATCAGCCTCACTTCAACTGCCAAATTTTCTCCAAGCAGCAAATGACATTGTTATCCATATGCAATGCTTGGCAGCCTTAGTTGGTCATTTCCAATGGAGAAAGGTGACTGCAATTTATGAACAAAACATTGACTTTTCCTCCAATTCTGGAATGATAACCCTCCTCTCTGATTCACTTAAATTAGTCAACTCAGAGATTGAACACCACCAAGCTTTCCCAACCCGCTCTTCTCTCTTCTATCCGGATGCCTTTTTTGATGAAGAGCTGAAGAAGTTGAGGAGCAAGAGCAACAGGGTTTTCATAGTTACCCAGTTCTCTTTAAATACAGCAGTTTTTCTCTTTGAAAAGGCAAAGGAAAGGGGGATGATGGGCAAAGGCTATGTGTGGATTGTCACAGATGAAATTGCAAGCCTTCTTGACTCTGTTGACTCTTCTATCAAGTACAACATGCAAGGTGTGATTGGCATCAAAACCAACTTCATCGAAACAACCCACAATTTCACCAAGTTCAAAACCAGGTTCCGCAGACTGTATGGACTGCAATACCCTGAAGAAGAAGAAAACTCTAGTCCAAGCATCTTTGCTCTTCGAACTTATGACGCAATGCACGCCATTGCTCTAGCCATGAAAAATGCTACTTCAAAACATTTGTCTCAAGAAATTGTGTCCACCGAATTCCAAGGTCTAAGTGGCATGATGGAGTTCAAAAATGGCATGCTATCACAACAACCAACCTTTCAAATCATTAATGTGTTTGGCAGAAGCTACAGTGAGATTGCATTCTGGTCACCAAGCTTTGGTTTCTCAGAGGACATGAACAAACACCTTGATATGAAGGAGAGGACTAACCACAATTATGTTCAAGTTTTGGGTCCAATCAACTGGCCAGGTGGCTTACAAGCAGCTCCAAAGGGGTGGACTCTTGTTGATGGAGAGAGACCGTTGAAGATAGGGATTCCGGCGAGGGGTGCCTTCAATCAATTTGTGAAAGTCACATATGACCAGGACAAGAAGCAGACACACATCTCAGGGTTTTCAATTGATATCTTTGAAGCAGCTGTCAAAAACCTGCCTTATCAGTTCTCTTATGTGTATGTTCCCTTCAATGGCTCATATGATGAATTGGTGGAACAGGTCTACTACAAGGGCTTGGATGCAGCTGTTGGTGATATAGAAGTCATAGCTGACCGGTATCATTATGTTGAGTTCTCACAACCATATATAAGCTCTGGACTTCAGATGGTAGTCACTGTAAAGCCAGATAAGCTGAAGGAAAAATGGATGTTCATGAATGCCTTCAGCAAAAGCATGTGGTTGCTCATGATCACTACACACCTTTCTGTATGCTTTGTTGTCTGGTTTATTGAATGCGAACATGGGCAAAACTTTGAATTAGAGGGCATTGGGGCCATCCTGTGGTTCTCTGTCACCGTCTTATTCTTCGTGCAAAGAGAACGAGTTCAGAGTAATTGGGCAAGGCTGGTGCTAGCTCCATGGTTAGTAGTGATTCTAGTAGTAACAGCCACTTTCACAGCGAGCCTCACTTCCATGATGACCATCTCTCGAGTCCAGCCATCTGTGCTCAATGTTGAAACACTTAAGGAAGAAAATGGAACTGTTGGATGTAATGGAAACTCTTTTATAGTAAGGTACCTGATCGATGTTCTAGAGTTCAGACTAGAAAACATCAAGAGAATTTCCTCCATAAGTGACTACCCAAAGGCCTTCCAGAATGGAGATATTCAAGCAGCTTTCTTCGTCGCCCCCCATGCTAAAGTCTTTCTCGCATGTTACTGCAAGGGCTATACGAAAGCAGGTCCTATATACAAGCCTAGCGGCTTTGCATTTGTTTTTCCGAAGGGATCTCCCCTGGCCATTGACCTGTCAAAGGCAATCCTAGATGTAAACGAGAGGAAGCAAGTGGAGCTATTAGAAAAACAAATGCTCTCCTCCTTTAACTGCTCCCCTTCACTCAACTTGAACGATGGTCCAATAGGTTATGAGCCCTTTTCCGGCCTATTTCTAATTTCAGGTTTGGTTTGTGCATTTGCTCTATTGGTTACGAGTGGGCGTATCGCCGGTAGACATCTGCAGGATATGAGCTGCATACGAGCAATACTAATGAAAACAGGAATTCTAAGATGGGCTTTTATGTACTTGATTCAGAGCTGCAGAAAATCTCAAAAGCATTGCTCCACAACCTCCATCCTGGAAACTTGCTCTACAAGGAACATGAGCAGTGGTGGTGATATAGTGATTATCACGCACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

890

Amino Acids

99.86

Weight (kDa)

8.22

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	34 - 363	1.4e-07	Periplasmic binding protein
ANF_receptor	PF01094	51 - 384	1.7e-41	Receptor family ligand binding region
SBP_bac_3	PF00497	465 - 774	5.9e-09	Bacterial extracellular solute-binding proteins, family 3
Lig_chan-Glu_bd	PF10613	467 - 550	2.1e-06	Ligated ion channel L-glutamate- and glycine-binding site
Lig_chan	PF00060	568 - 812	3.7e-19	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34370
malus_domestica	MD15G1082100.v1.1
prunus_persica	Prupe.1G434800_v2.0.a1
pyrus_communis	pycom15g07690
rosa_chinensis	RchiOBHm_Chr6g0308001 RchiOBHm_Chr6g0308011
rosa_laevigata	RLG00000010676 RLG00000010677 RLG00000010678 RLG00000010679
rosa_multiflora	Rmu_sc0006237.1_g000009 Rmu_sc0006237.1_g000010
rosa_roxburghii	Rroxscaffold_7G00160680 Rroxscaffold_7G00160690
rosa_rugosa	Rorug06G0362900 Rorug06G0363000
rosa_samantha	Rh6BG482500 Rh6BG482700 Rh6CG487800 Rh6CG488000 Rh6DG474100 Rh6DG474200
rosa_wichuraiana	Rw6G041170 Rw6G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1476, 2204
Acc65I	GGTACC	1 cut(s)	2049
AccB1I	GGYRCC	2 cut(s)	1367, 2049
AccB7I	CCANNNNNTGG	2 cut(s)	1196, 1815
AccBSI	CCGCTC	1 cut(s)	624
AccI	GTMKAC	2 cut(s)	1536, 2482
AccIII	TCCGGA	1 cut(s)	640
AciI	CCGC	3 cut(s)	622, 922, 2235
AclWI	GGATC	1 cut(s)	2269
AcoI	YGGCCR	3 cut(s)	48, 1283, 2271
AcsI	RAATTY	6 cut(s)	37, 355, 421, 1073, 2094, 2532
AcuI	CTGAAG	5 cut(s)	686, 969, 1619, 1681, 1688
AfaI	GTAC	3 cut(s)	842, 2051, 2555
AfiI	CCNNNNNNNGG	6 cut(s)	1196, 1364, 1505, 1815, 2287, 2411
AflII	CTTAAG	1 cut(s)	1997
AgeI	ACCGGT	1 cut(s)	1587
AjnI	CCWGG	6 cut(s)	45, 914, 1285, 1401, 2268, 2607
AjuI	GAANNNNNNNTTGG	4 cut(s)	165, 197, 610, 642
Alw21I	GWGCWC	1 cut(s)	1983
Alw26I	GTCTC	4 cut(s)	17, 334, 1056, 1330
AlwI	GGATC	1 cut(s)	2269
Ama87I	CYCGRG	2 cut(s)	187, 1962
Aor13HI	TCCGGA	1 cut(s)	640
AoxI	GGCC	6 cut(s)	48, 1283, 1806, 2121, 2271, 2413
ApoI	RAATTY	6 cut(s)	37, 355, 421, 1073, 2094, 2532
ArsI	GACNNNNNNTTYG	2 cut(s)	1034, 1066
AseI	ATTAAT	1 cut(s)	1146
AsiGI	ACCGGT	1 cut(s)	1587
Asp700I	GAANNNNTTC	2 cut(s)	1694, 1857
Asp718I	GGTACC	1 cut(s)	2049
AspS9I	GGNCC	4 cut(s)	1271, 1806, 2216, 2387
AsuHPI	GGTGA	8 cut(s)	46, 352, 514, 892, 1179, 1577, 1819, 2657
AsuII	TTCGAA	1 cut(s)	988
AsuNHI	GCTAGC	1 cut(s)	1885
AvaI	CYCGRG	2 cut(s)	187, 1962
AvaII	GGWCC	3 cut(s)	1271, 2216, 2387
BalI	TGGCCA	3 cut(s)	50, 1285, 2273
BanI	GGYRCC	2 cut(s)	1367, 2049
BanII	GRGCYC	1 cut(s)	2406
BarI	GAAGNNNNNNTAC	2 cut(s)	1484, 1516
BauI	CACGAG	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	1983
BciT130I	CCWGG	6 cut(s)	47, 916, 1287, 1403, 2270, 2609
BclI	TGATCA	1 cut(s)	1722
BcoDI	GTCTC	4 cut(s)	17, 334, 1056, 1330
BfaI	CTAG	8 cut(s)	966, 1019, 1886, 1910, 2066, 2078, 2232, 2297
BfmI	CTRYAG	4 cut(s)	111, 1165, 2489, 2569
BfrI	CTTAAG	1 cut(s)	1997
BfuAI	ACCTGC	2 cut(s)	1476, 2204
Bme1390I	CCNGG	6 cut(s)	47, 916, 1287, 1403, 2270, 2609
Bme18I	GGWCC	3 cut(s)	1271, 2216, 2387
BmeT110I	CYCGRG	2 cut(s)	187, 1962
BmgT120I	GGNCC	4 cut(s)	1271, 1806, 2216, 2387
BmiI	GGNNCC	5 cut(s)	920, 1272, 1369, 1807, 2051
BmrFI	CCNGG	6 cut(s)	47, 916, 1287, 1403, 2270, 2609
BmrI	ACTGGG	1 cut(s)	703
BmsI	GCATC	4 cut(s)	634, 873, 984, 1543
BmtI	GCTAGC	1 cut(s)	1889
BmuI	ACTGGG	1 cut(s)	703
BoxI	GACNNNNGTC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	988
BpuEI	CTTGAG	1 cut(s)	1038
Bsa29I	ATCGAT	1 cut(s)	2058
BsaBI	GATNNNNATC	2 cut(s)	863, 1955
BsaI	GGTCTC	3 cut(s)	17, 334, 1330
BsaJI	CCNNGG	5 cut(s)	45, 156, 1078, 1892, 2268
BsaWI	WCCGGW	2 cut(s)	640, 1587
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 129, 521, 551
Bsc4I	CCNNNNNNNGG	6 cut(s)	1196, 1364, 1505, 1815, 2287, 2411
Bse118I	RCCGGY	2 cut(s)	1587, 2477
Bse1I	ACTGG	3 cut(s)	709, 1286, 2668
Bse3DI	GCAATG	4 cut(s)	467, 1008, 1011, 2587
Bse8I	GATNNNNATC	2 cut(s)	863, 1955
BseAI	TCCGGA	1 cut(s)	640
BseBI	CCWGG	6 cut(s)	47, 916, 1287, 1403, 2270, 2609
BseCI	ATCGAT	1 cut(s)	2058
BseDI	CCNNGG	5 cut(s)	45, 156, 1078, 1892, 2268
BseGI	GGATG	7 cut(s)	649, 768, 1558, 1686, 1809, 2027, 2604
BseJI	GATNNNNATC	2 cut(s)	863, 1955
BseLI	CCNNNNNNNGG	6 cut(s)	1196, 1364, 1505, 1815, 2287, 2411
BseMI	GCAATG	4 cut(s)	467, 1008, 1011, 2587
BseMII	CTCAG	4 cut(s)	229, 603, 1218, 1440
BseNI	ACTGG	3 cut(s)	709, 1286, 2668
BseRI	GAGGAG	3 cut(s)	551, 691, 2338
BshFI	GGCC	6 cut(s)	50, 1285, 1808, 2123, 2273, 2415
BshNI	GGYRCC	2 cut(s)	1367, 2049
BshTI	ACCGGT	1 cut(s)	1587
BshVI	ATCGAT	1 cut(s)	2058
BsiHKAI	GWGCWC	1 cut(s)	1983
BsiHKCI	CYCGRG	2 cut(s)	187, 1962
BsiSI	CCGG	5 cut(s)	641, 1358, 1588, 2412, 2478
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	6 cut(s)	1196, 1364, 1505, 1815, 2287, 2411
BsmAI	GTCTC	4 cut(s)	17, 334, 1056, 1330
BsmFI	GGGAC	1 cut(s)	77
BsmI	GAATGC	3 cut(s)	1178, 1696, 1772
BsnI	GGCC	6 cut(s)	50, 1285, 1808, 2123, 2273, 2415
Bso31I	GGTCTC	3 cut(s)	17, 334, 1330
BsoBI	CYCGRG	2 cut(s)	187, 1962
Bsp119I	TTCGAA	1 cut(s)	988
Bsp1286I	GDGCHC	2 cut(s)	1983, 2406
Bsp13I	TCCGGA	1 cut(s)	640
Bsp143I	GATC	3 cut(s)	1722, 2055, 2261
Bsp19I	CCATGG	2 cut(s)	156, 1892
BspACI	CCGC	3 cut(s)	622, 922, 2235
BspANI	GGCC	6 cut(s)	50, 1285, 1808, 2123, 2273, 2415
BspCNI	CTCAG	4 cut(s)	228, 602, 1217, 1439
BspDI	ATCGAT	1 cut(s)	2058
BspEI	TCCGGA	1 cut(s)	640
BspHI	TCATGA	2 cut(s)	1686, 1719
BspLI	GGNNCC	5 cut(s)	920, 1272, 1369, 1807, 2051
BspMAI	CTGCAG	2 cut(s)	2493, 2573
BspMI	ACCTGC	2 cut(s)	1476, 2204
BspOI	GCTAGC	1 cut(s)	1889
BspPI	GGATC	1 cut(s)	2269
BspQI	GCTCTTC	3 cut(s)	631, 654, 990
BspT104I	TTCGAA	1 cut(s)	988
BspT107I	GGYRCC	2 cut(s)	1367, 2049
BspTI	CTTAAG	1 cut(s)	1997
BspTNI	GGTCTC	3 cut(s)	17, 334, 1330
BsrBI	CCGCTC	1 cut(s)	624
BsrDI	GCAATG	4 cut(s)	467, 1008, 1011, 2587
BsrFI	RCCGGY	2 cut(s)	1587, 2477
BsrI	ACTGG	3 cut(s)	709, 1286, 2668
BssAI	RCCGGY	2 cut(s)	1587, 2477
BssECI	CCNNGG	5 cut(s)	45, 156, 1078, 1892, 2268
BssMI	GATC	3 cut(s)	1722, 2055, 2261
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	3 cut(s)	156, 1078, 1892
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	6 cut(s)	47, 916, 1287, 1403, 2270, 2609
Bst4CI	ACNGT	7 cut(s)	202, 930, 1169, 1341, 1651, 1831, 2017
Bst6I	CTCTTC	6 cut(s)	52, 631, 638, 654, 835, 990
BstAFI	CTTAAG	1 cut(s)	1997
BstBI	TTCGAA	1 cut(s)	988
BstC8I	GCNNGC	5 cut(s)	808, 1008, 1115, 1887, 1936
BstDEI	CTNAG	8 cut(s)	208, 215, 475, 589, 1085, 1204, 1426, 2537
BstDSI	CCRYGG	2 cut(s)	156, 1892
BstEII	GGTNACC	1 cut(s)	1185
BstENI	CCTNNNNNAGG	1 cut(s)	2285
BstF5I	GGATG	7 cut(s)	649, 768, 1558, 1686, 1809, 2027, 2604
BstKTI	GATC	3 cut(s)	1725, 2058, 2264
BstMAI	GTCTC	4 cut(s)	17, 334, 1056, 1330
BstMBI	GATC	3 cut(s)	1722, 2055, 2261
BstMWI	GCNNNNNNNGC	6 cut(s)	1007, 1367, 1663, 1978, 2168, 2323
BstNI	CCWGG	6 cut(s)	47, 916, 1287, 1403, 2270, 2609
BstNSI	RCATGY	4 cut(s)	850, 1117, 1711, 2190
BstPAI	GACNNNNGTC	1 cut(s)	69
BstPI	GGTNACC	1 cut(s)	1185
BstSCI	CCNGG	6 cut(s)	45, 914, 1285, 1401, 2268, 2607
BstSFI	CTRYAG	4 cut(s)	111, 1165, 2489, 2569
BstX2I	RGATCY	1 cut(s)	2261
BstXI	CCANNNNNNTGG	3 cut(s)	163, 1281, 1314
BstYI	RGATCY	1 cut(s)	2261
Bsu15I	ATCGAT	1 cut(s)	2058
BsuRI	GGCC	6 cut(s)	50, 1285, 1808, 2123, 2273, 2415
BsuTUI	ATCGAT	1 cut(s)	2058
BtgI	CCRYGG	2 cut(s)	156, 1892
BtsCI	GGATG	7 cut(s)	649, 768, 1558, 1686, 1809, 2027, 2604
BtsI	GCAGTG	2 cut(s)	381, 2644
BtsIMutI	CAGTG	5 cut(s)	302, 381, 1174, 1647, 2644
BveI	ACCTGC	2 cut(s)	1476, 2204
Cac8I	GCNNGC	5 cut(s)	808, 1008, 1115, 1887, 1936
CciI	TCATGA	2 cut(s)	1686, 1719
Cfr10I	RCCGGY	2 cut(s)	1587, 2477
Cfr13I	GGNCC	4 cut(s)	1271, 1806, 2216, 2387
ClaI	ATCGAT	1 cut(s)	2058
CseI	GACGC	1 cut(s)	1007
CsiI	ACCWGGT	1 cut(s)	914
Csp6I	GTAC	3 cut(s)	841, 2050, 2554
CspAI	ACCGGT	1 cut(s)	1587
CviQI	GTAC	3 cut(s)	841, 2050, 2554
DdeI	CTNAG	8 cut(s)	208, 215, 475, 589, 1085, 1204, 1426, 2537
DpnI	GATC	3 cut(s)	1724, 2057, 2263
DpnII	GATC	3 cut(s)	1722, 2055, 2261
DraI	TTTAAA	1 cut(s)	720
EaeI	YGGCCR	3 cut(s)	48, 1283, 2271
Eam1104I	CTCTTC	6 cut(s)	52, 631, 638, 654, 835, 990
EarI	CTCTTC	6 cut(s)	52, 631, 638, 654, 835, 990
Eco130I	CCWWGG	3 cut(s)	156, 1078, 1892
Eco147I	AGGCCT	1 cut(s)	2123
Eco24I	GRGCYC	1 cut(s)	2406
Eco31I	GGTCTC	3 cut(s)	17, 334, 1330
Eco32I	GATATC	1 cut(s)	1444
Eco47I	GGWCC	3 cut(s)	1271, 2216, 2387
Eco57I	CTGAAG	5 cut(s)	686, 969, 1619, 1681, 1688
Eco88I	CYCGRG	2 cut(s)	187, 1962
Eco91I	GGTNACC	1 cut(s)	1185
EcoNI	CCTNNNNNAGG	1 cut(s)	2285
EcoO109I	RGGNCCY	1 cut(s)	2216
EcoO65I	GGTNACC	1 cut(s)	1185
EcoRI	GAATTC	3 cut(s)	37, 1073, 2532
EcoRII	CCWGG	6 cut(s)	45, 914, 1285, 1401, 2268, 2607
EcoRV	GATATC	1 cut(s)	1444
EcoT14I	CCWWGG	3 cut(s)	156, 1078, 1892
EcoT38I	GRGCYC	1 cut(s)	2406
ErhI	CCWWGG	3 cut(s)	156, 1078, 1892
FalI	AAGNNNNNCTT	4 cut(s)	165, 197, 2530, 2562
FaqI	GGGAC	1 cut(s)	77
FauI	CCCGC	1 cut(s)	629
FauNDI	CATATG	3 cut(s)	456, 1396, 1513
FbaI	TGATCA	1 cut(s)	1722
FblI	GTMKAC	2 cut(s)	1536, 2482
FokI	GGATG	7 cut(s)	656, 775, 1565, 1693, 1796, 2034, 2591
FriOI	GRGCYC	1 cut(s)	2406
FspBI	CTAG	8 cut(s)	966, 1019, 1886, 1910, 2066, 2078, 2232, 2297
HaeIII	GGCC	6 cut(s)	50, 1285, 1808, 2123, 2273, 2415
HapII	CCGG	5 cut(s)	641, 1358, 1588, 2412, 2478
HgaI	GACGC	1 cut(s)	1007
HincII	GTYRAC	2 cut(s)	586, 826
HindII	GTYRAC	2 cut(s)	586, 826
HindIII	AAGCTT	2 cut(s)	609, 1192
HinfI	GANTC	9 cut(s)	221, 569, 818, 827, 1318, 1354, 1906, 1965, 2560
HpaII	CCGG	5 cut(s)	641, 1358, 1588, 2412, 2478
HphI	GGTGA	8 cut(s)	46, 352, 514, 892, 1179, 1577, 1819, 2657
Hpy166II	GTNNAC	8 cut(s)	205, 586, 826, 1068, 1317, 1537, 2305, 2483
Hpy8I	GTNNAC	8 cut(s)	205, 586, 826, 1068, 1317, 1537, 2305, 2483
Hpy99I	CGWCG	1 cut(s)	2162
HpyCH4III	ACNGT	7 cut(s)	202, 930, 1169, 1341, 1651, 1831, 2017
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1007, 1367, 1663, 1978, 2168, 2323
HpyF3I	CTNAG	8 cut(s)	208, 215, 475, 589, 1085, 1204, 1426, 2537
Kpn2I	TCCGGA	1 cut(s)	640
KpnI	GGTACC	1 cut(s)	2053
Ksp22I	TGATCA	1 cut(s)	1722
Kzo9I	GATC	3 cut(s)	1722, 2055, 2261
LguI	GCTCTTC	3 cut(s)	631, 654, 990
LmnI	GCTCC	7 cut(s)	107, 678, 1309, 1894, 2323, 2366, 2597
LweI	GCATC	4 cut(s)	634, 873, 984, 1543
MabI	ACCWGGT	1 cut(s)	914
MaeI	CTAG	8 cut(s)	966, 1019, 1886, 1910, 2066, 2078, 2232, 2297
MalI	GATC	3 cut(s)	1724, 2057, 2263
MbiI	CCGCTC	1 cut(s)	624
MboI	GATC	3 cut(s)	1722, 2055, 2261
MfeI	CAATTG	1 cut(s)	1437
MflI	RGATCY	1 cut(s)	2261
MhlI	GDGCHC	2 cut(s)	1983, 2406
MlsI	TGGCCA	3 cut(s)	50, 1285, 2273
MluNI	TGGCCA	3 cut(s)	50, 1285, 2273
MlyI	GAGTC	4 cut(s)	812, 821, 1312, 1974
MmeI	TCCRAC	1 cut(s)	1999
Mox20I	TGGCCA	3 cut(s)	50, 1285, 2273
MroI	TCCGGA	1 cut(s)	640
MroXI	GAANNNNTTC	2 cut(s)	1694, 1857
MscI	TGGCCA	3 cut(s)	50, 1285, 2273
MseI	TTAA	6 cut(s)	270, 576, 719, 1146, 1998, 2355
MslI	CAYNNNNRTG	3 cut(s)	1148, 1254, 1946
Msp20I	TGGCCA	3 cut(s)	50, 1285, 2273
MspA1I	CMGCKG	2 cut(s)	1457, 1559
MspCI	CTTAAG	1 cut(s)	1997
MspI	CCGG	5 cut(s)	641, 1358, 1588, 2412, 2478
MspR9I	CCNGG	6 cut(s)	47, 916, 1287, 1403, 2270, 2609
MunI	CAATTG	1 cut(s)	1437
Mva1269I	GAATGC	3 cut(s)	1178, 1696, 1772
MvaI	CCWGG	6 cut(s)	47, 916, 1287, 1403, 2270, 2609
MwoI	GCNNNNNNNGC	6 cut(s)	1007, 1367, 1663, 1978, 2168, 2323
NcoI	CCATGG	2 cut(s)	156, 1892
NdeI	CATATG	3 cut(s)	456, 1396, 1513
NdeII	GATC	3 cut(s)	1722, 2055, 2261
NheI	GCTAGC	1 cut(s)	1885
NlaIV	GGNNCC	5 cut(s)	920, 1272, 1369, 1807, 2051
NmuCI	GTSAC	7 cut(s)	502, 790, 1185, 1390, 1645, 1825, 2108
NspI	RCATGY	4 cut(s)	850, 1117, 1711, 2190
NspV	TTCGAA	1 cut(s)	988
PaeI	GCATGC	1 cut(s)	1117
PaeR7I	CTCGAG	2 cut(s)	187, 1962
PagI	TCATGA	2 cut(s)	1686, 1719
PceI	AGGCCT	1 cut(s)	2123
PciSI	GCTCTTC	3 cut(s)	631, 654, 990
PctI	GAATGC	3 cut(s)	1178, 1696, 1772
PdmI	GAANNNNTTC	2 cut(s)	1694, 1857
PfeI	GAWTC	5 cut(s)	221, 569, 1354, 1906, 2560
PflMI	CCANNNNNTGG	2 cut(s)	1196, 1815
PfoI	TCCNGGA	1 cut(s)	2607
PinAI	ACCGGT	1 cut(s)	1587
PleI	GAGTC	4 cut(s)	812, 821, 1312, 1973
PpsI	GAGTC	4 cut(s)	812, 821, 1312, 1973
PpuMI	RGGWCCY	1 cut(s)	2216
PshAI	GACNNNNGTC	1 cut(s)	69
PshBI	ATTAAT	1 cut(s)	1146
Psp5II	RGGWCCY	1 cut(s)	2216
Psp6I	CCWGG	6 cut(s)	45, 914, 1285, 1401, 2268, 2607
PspEI	GGTNACC	1 cut(s)	1185
PspGI	CCWGG	6 cut(s)	45, 914, 1285, 1401, 2268, 2607
PspN4I	GGNNCC	5 cut(s)	920, 1272, 1369, 1807, 2051
PspPI	GGNCC	4 cut(s)	1271, 1806, 2216, 2387
PspPPI	RGGWCCY	1 cut(s)	2216
PspXI	VCTCGAGB	1 cut(s)	187
PstI	CTGCAG	2 cut(s)	2493, 2573
PsuI	RGATCY	1 cut(s)	2261
PvuII	CAGCTG	2 cut(s)	1457, 1559
RsaI	GTAC	3 cut(s)	842, 2051, 2555
RsaNI	GTAC	3 cut(s)	841, 2050, 2554
RseI	CAYNNNNRTG	3 cut(s)	1148, 1254, 1946
SapI	GCTCTTC	3 cut(s)	631, 654, 990
SaqAI	TTAA	6 cut(s)	270, 576, 719, 1146, 1998, 2355
Sau3AI	GATC	3 cut(s)	1722, 2055, 2261
Sau96I	GGNCC	4 cut(s)	1271, 1806, 2216, 2387
SchI	GAGTC	4 cut(s)	812, 821, 1312, 1974
ScrFI	CCNGG	6 cut(s)	47, 916, 1287, 1403, 2270, 2609
SduI	GDGCHC	2 cut(s)	1983, 2406
SexAI	ACCWGGT	1 cut(s)	914
SfaNI	GCATC	4 cut(s)	634, 873, 984, 1543
SfcI	CTRYAG	4 cut(s)	111, 1165, 2489, 2569
Sfr274I	CTCGAG	2 cut(s)	187, 1962
SfuI	TTCGAA	1 cut(s)	988
SinI	GGWCC	3 cut(s)	1271, 2216, 2387
SlaI	CTCGAG	2 cut(s)	187, 1962
SmiMI	CAYNNNNRTG	3 cut(s)	1148, 1254, 1946
SmlI	CTYRAG	4 cut(s)	187, 1053, 1962, 1997
SmoI	CTYRAG	4 cut(s)	187, 1053, 1962, 1997
SphI	GCATGC	1 cut(s)	1117
SseBI	AGGCCT	1 cut(s)	2123
SsiI	CCGC	3 cut(s)	622, 922, 2235
SspMI	CTAG	8 cut(s)	966, 1019, 1886, 1910, 2066, 2078, 2232, 2297
StuI	AGGCCT	1 cut(s)	2123
StyD4I	CCNGG	6 cut(s)	45, 914, 1285, 1401, 2268, 2607
StyI	CCWWGG	3 cut(s)	156, 1078, 1892
TaaI	ACNGT	7 cut(s)	202, 930, 1169, 1341, 1651, 1831, 2017
TaqI	TCGA	5 cut(s)	188, 882, 988, 1963, 2058
TatI	WGTACW	2 cut(s)	840, 2553
TauI	GCSGC	1 cut(s)	2238
TfiI	GAWTC	5 cut(s)	221, 569, 1354, 1906, 2560
Tru1I	TTAA	6 cut(s)	270, 576, 719, 1146, 1998, 2355
Tru9I	TTAA	6 cut(s)	270, 576, 719, 1146, 1998, 2355
TscAI	CASTG	5 cut(s)	309, 388, 1174, 1654, 2644
TseFI	GTSAC	7 cut(s)	502, 790, 1185, 1390, 1645, 1825, 2108
Tsp45I	GTSAC	7 cut(s)	502, 790, 1185, 1390, 1645, 1825, 2108
TspRI	CASTG	5 cut(s)	309, 388, 1174, 1654, 2644
Van91I	CCANNNNNTGG	2 cut(s)	1196, 1815
Vha464I	CTTAAG	1 cut(s)	1997
VpaK11BI	GGWCC	3 cut(s)	1271, 2216, 2387
VspI	ATTAAT	1 cut(s)	1146
XagI	CCTNNNNNAGG	1 cut(s)	2285
XapI	RAATTY	6 cut(s)	37, 355, 421, 1073, 2094, 2532
XbaI	TCTAGA	1 cut(s)	2065
XceI	RCATGY	4 cut(s)	850, 1117, 1711, 2190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1085
XhoI	CTCGAG	2 cut(s)	187, 1962
XmiI	GTMKAC	2 cut(s)	1536, 2482
XmnI	GAANNNNTTC	2 cut(s)	1694, 1857
XspI	CTAG	8 cut(s)	966, 1019, 1886, 1910, 2066, 2078, 2232, 2297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.