Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005524

Physical Location & Seq

Genomic Coordinates Forward (+)

3630424 .. 3633981

Gene Structure 3558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2679 bp

ATGTCTTGGGGTCTCTTGGTTTTGCTGTTGCTGGTGCTGGTGAATTCAGCCCTGGCCAATGGAAGAGGGGACAGATGTCAAAAAACCCAGCAACACAGAGTTGCAAGAATAGGAGCTGTAGTTGATTTCACTTCTCGTGTGGGCAAAGAACAGAGAATAGCCATGGATTTGGCTATCCAAGATCTTCTTCACTCGAGCTGCCTTACAGTAAACTTAGACCTCAGAGATTCACAAGGCAATTCAGCTAAATCAACTGCTGCTGTAATCAATCTTCTTAATCTCAAACAAGTTGAAGCCATCATCGGAACACTGACAAAGCAAGAAGCTGCTCTGGTATCCGAGATTGACAATCGCAGCCAGAATTTCACCATCATATCACTTCCTTCCACTGCCATAAATCCACCATCAGCCTCACTTCAACTGCCAAATTTTTTCCAAGCAGCAAATGACATTGTTATCCATATGCAATGCTTGGCAGCCTTAGTCGGTCATTTCCAATGGAGAAAGGTGACTGCAATTTATGAACAAAACATTGACTTTTCCTCCAATTCTGGAATGATAACCCTCCTCTCTGATTCACTTAAATTAGTCAACTCAGAGATTGAACACCACCAAGCTTTCCCAACCCGCTCTTCTCTCTTCTATCCGGATGCCTTTTTTGATGAAGAGCTGAAGAAGTTGAGGAGCAAGAGCAACAGGGTTTTCATAGTTACCCAGTTCTCTTTAAATACAGCAGTTTTTCTCTTTGAAAAGGCAAAGGAAATGGGGATGATGGGCAAAGGCTATGTGTGGATTGTCACAGATGAAATTGCAAGCCTTCTTGACTCTGTTGACTCTTCTATCAAGTACAACATGCAAGGTGTGATTGGTATCAAAACCAACTTCATCGAAACAACCCACAATTTCATCAAGTTCAAAACCAGGTTCCGCAGACTGTATGGACTGCAATACCCTGAAGAAGAAGAAAACTCTAGTCCAAGCATCTTTGCTCTTCGAACTTATGACGCAATGCACGCCATTGCTCTAGCCATGAAAAATGCTACTTCAAAACATTTGTCTCAAGAAATTGTGTCCACCGAATTCCAAGGTCTAAGTGGCATGATGGAGTTCAAGAATGGCATGTTATCACAACAACCAACCTTTCAAATCATTAATGTGTTTGGCAGAAGCTACAGCGAGATTGCATTCTGGTCACCAAGCTTCGGTTTCTCAGAGGACATGAACAAACACCTTGATATGAAGGGGAGGACTAACCACAATTATGTTCAAGTTTTGGGTCCAATCAACTGGCCAGGTGGCTTACAAGCAGCTCCAAAGGGGTGGACTCTTGTTGATGGAGAGAGACCGTTGAAGATAGGGATTCCGGCGAGGGGTGCCTTCAATCAATTTGTGAAAGTCACATATGACCAGGACAAGAATCAGACAAACATCTCAGGGTTTTCAATTGATATCTTTGAAGCAGCTGTGAAAAACCTGCCTTATCAGTTGCCTTATGTGTTTGTTCCCTTCAATGGCTCATATGATGAATTGGTGGAACAGGTCTACTACAAGGGCTTGGATGCAGCTGTTGGTGATATAGAAGTCATAGCTGACCGGTATCATTATATTGAGTTCTCACAACCATATATAAGCTCTGGACTTCAGATGGTAGTCACTGTAAAGCCAGATAAGCTGAAGGAAAAATGGATGTTCATGAATGCCTTCAGCAAAAGCATGTGGTTGCTCATGATCACTACACACCTTTCTGTATGCTTTGTTGTCTGGTTTATTGAATGCGAACATGGGCAAAACTTTGAATTAGAGGGCATTGGGGCCATCCTGTGGTTCTCTGTCACCGTTTTATTCTTTGTGCAAAGAGAACGAGTTCAGAGTAATTGGGCAAGGCTGGTGCTGGCTCCATGGTTAGTAGTGATTCTAGTAGTAACAGCCACTTTCACAGCAAGCCTCACTTCCATGATGACCATCTCTCGAGTCCAGCCATCTGTGCTCAATGTGGAAACACTTAAGAAAGAAAATGGGACTGTTGGATGTAATGGAAACTCTTTTATTGTAAGGTACTTGATCGATGTTCTAGAGTTCAGACCAGAAAACATCAAGAGAATTTCCTCCATAAGTGACTACCCAAAGGCCTTCCAGAATGGAGATATTCAAGCAGCTTTCTTCGTTGCCCCCCATGCTAAAGTCTTTCTCGCATGTTACTGCAAGGGCTACATGAAAGCAGGTCCTATATACAAGCCTAGCGGCTTTGCATTTGTTTTTCCAAAGGGATCTCCCCTGGCCATTGACCTGTCAAAGGCAATCCTAGATGTAAACGAGAAGAAGCAAGTGGAGCTATTAGAAAAACAAATGCTCTCCTCCTTTAACTGCTCCCCTTCACTCAACTTGAACGATGGTCCAATAGGTTATGAGCCCTTTTCCGGCCTATTTCTAATTTCAGGTTTGGTTTGTGCATTTGCTCTATTTGTTACGAGTGGGCGTATCGCTGGTAGACATCTGCAGAATATGAGCTGCATACGAGCAATACTAATGAAAACAGGAATTCTAAGATGGGCTTTTATGTACTTGATTCAGAGCTGCAGAAAATCTCAAAAGCATTGCTCCACAACCTCCATCCTGGAAACTTGCTCTACAAGGAACATGAGCAGTGGTGGTGATATTGTGACTATCACGCACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

892

Amino Acids

99.98

Weight (kDa)

8.45

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	36 - 365	8.4e-08	Periplasmic binding protein
ANF_receptor	PF01094	53 - 386	1.6e-41	Receptor family ligand binding region
SBP_bac_3	PF00497	466 - 780	7.5e-09	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	570 - 814	2.5e-19	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34370
malus_domestica	MD15G1082100.v1.1
prunus_persica	Prupe.1G434800_v2.0.a1
pyrus_communis	pycom15g07690
rosa_chinensis	RchiOBHm_Chr6g0308001 RchiOBHm_Chr6g0308011
rosa_laevigata	RLG00000010676 RLG00000010677 RLG00000010678 RLG00000010679
rosa_multiflora	Rmu_sc0006237.1_g000009 Rmu_sc0006237.1_g000010
rosa_roxburghii	Rroxscaffold_7G00160680 Rroxscaffold_7G00160690
rosa_rugosa	Rorug06G0362900 Rorug06G0363000
rosa_samantha	Rh6BG482500 Rh6BG482700 Rh6CG487800 Rh6CG488000 Rh6DG474100 Rh6DG474200
rosa_wichuraiana	Rw6G041170 Rw6G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1482, 2210
AccB1I	GGYRCC	1 cut(s)	1373
AccB7I	CCANNNNNTGG	1 cut(s)	1821
AccBSI	CCGCTC	1 cut(s)	630
AccI	GTMKAC	2 cut(s)	1542, 2488
AccIII	TCCGGA	1 cut(s)	646
AciI	CCGC	3 cut(s)	628, 928, 2241
AclWI	GGATC	1 cut(s)	2275
AcoI	YGGCCR	3 cut(s)	54, 1289, 2277
AcsI	RAATTY	6 cut(s)	43, 361, 427, 1079, 2100, 2538
AcuI	CTGAAG	5 cut(s)	692, 975, 1625, 1687, 1694
AfaI	GTAC	3 cut(s)	848, 2057, 2561
AfiI	CCNNNNNNNGG	6 cut(s)	1202, 1370, 1511, 1821, 2293, 2417
AflII	CTTAAG	1 cut(s)	2003
AgeI	ACCGGT	1 cut(s)	1593
AjnI	CCWGG	6 cut(s)	51, 920, 1291, 1407, 2274, 2613
AjuI	GAANNNNNNNTTGG	4 cut(s)	171, 203, 616, 648
Alw21I	GWGCWC	1 cut(s)	1989
Alw26I	GTCTC	3 cut(s)	17, 1062, 1336
AlwI	GGATC	1 cut(s)	2275
Ama87I	CYCGRG	2 cut(s)	193, 1968
Aor13HI	TCCGGA	1 cut(s)	646
AoxI	GGCC	6 cut(s)	54, 1289, 1812, 2127, 2277, 2419
ApoI	RAATTY	6 cut(s)	43, 361, 427, 1079, 2100, 2538
ArsI	GACNNNNNNTTYG	2 cut(s)	1040, 1072
AseI	ATTAAT	1 cut(s)	1152
AsiGI	ACCGGT	1 cut(s)	1593
Asp700I	GAANNNNTTC	2 cut(s)	1700, 1863
AspS9I	GGNCC	4 cut(s)	1277, 1812, 2222, 2393
AsuHPI	GGTGA	7 cut(s)	52, 358, 520, 1185, 1583, 1825, 2663
AsuII	TTCGAA	1 cut(s)	994
AvaI	CYCGRG	2 cut(s)	193, 1968
AvaII	GGWCC	3 cut(s)	1277, 2222, 2393
BalI	TGGCCA	3 cut(s)	56, 1291, 2279
BanI	GGYRCC	1 cut(s)	1373
BanII	GRGCYC	1 cut(s)	2412
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
BauI	CACGAG	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	1989
BciT130I	CCWGG	6 cut(s)	53, 922, 1293, 1409, 2276, 2615
BciVI	GTATCC	1 cut(s)	346
BclI	TGATCA	1 cut(s)	1728
BcoDI	GTCTC	3 cut(s)	17, 1062, 1336
BfaI	CTAG	6 cut(s)	972, 1025, 1916, 2072, 2238, 2303
BfmI	CTRYAG	4 cut(s)	117, 1171, 2495, 2575
BfrI	CTTAAG	1 cut(s)	2003
BfuAI	ACCTGC	2 cut(s)	1482, 2210
BfuI	GTATCC	1 cut(s)	346
BglII	AGATCT	1 cut(s)	181
Bme1390I	CCNGG	6 cut(s)	53, 922, 1293, 1409, 2276, 2615
Bme18I	GGWCC	3 cut(s)	1277, 2222, 2393
BmeT110I	CYCGRG	2 cut(s)	193, 1968
BmgT120I	GGNCC	4 cut(s)	1277, 1812, 2222, 2393
BmiI	GGNNCC	5 cut(s)	926, 1278, 1375, 1813, 1896
BmrFI	CCNGG	6 cut(s)	53, 922, 1293, 1409, 2276, 2615
BmrI	ACTGGG	1 cut(s)	709
BmsI	GCATC	3 cut(s)	640, 990, 1549
BmuI	ACTGGG	1 cut(s)	709
BoxI	GACNNNNGTC	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	994
BpuEI	CTTGAG	1 cut(s)	1044
Bsa29I	ATCGAT	1 cut(s)	2064
BsaBI	GATNNNNATC	2 cut(s)	869, 1961
BsaI	GGTCTC	2 cut(s)	17, 1336
BsaJI	CCNNGG	5 cut(s)	51, 162, 1084, 1898, 2274
BsaWI	WCCGGW	2 cut(s)	646, 1593
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 527, 557
Bsc4I	CCNNNNNNNGG	6 cut(s)	1202, 1370, 1511, 1821, 2293, 2417
Bse118I	RCCGGY	1 cut(s)	1593
Bse1I	ACTGG	3 cut(s)	715, 1292, 2674
Bse3DI	GCAATG	4 cut(s)	473, 1014, 1017, 2593
Bse8I	GATNNNNATC	2 cut(s)	869, 1961
BseAI	TCCGGA	1 cut(s)	646
BseBI	CCWGG	6 cut(s)	53, 922, 1293, 1409, 2276, 2615
BseCI	ATCGAT	1 cut(s)	2064
BseDI	CCNNGG	5 cut(s)	51, 162, 1084, 1898, 2274
BseGI	GGATG	7 cut(s)	655, 774, 1564, 1692, 1815, 2033, 2610
BseJI	GATNNNNATC	2 cut(s)	869, 1961
BseLI	CCNNNNNNNGG	6 cut(s)	1202, 1370, 1511, 1821, 2293, 2417
BseMI	GCAATG	4 cut(s)	473, 1014, 1017, 2593
BseMII	CTCAG	4 cut(s)	235, 609, 1224, 1446
BseNI	ACTGG	3 cut(s)	715, 1292, 2674
BseRI	GAGGAG	3 cut(s)	557, 697, 2344
BseYI	CCCAGC	1 cut(s)	87
BshFI	GGCC	6 cut(s)	56, 1291, 1814, 2129, 2279, 2421
BshNI	GGYRCC	1 cut(s)	1373
BshTI	ACCGGT	1 cut(s)	1593
BshVI	ATCGAT	1 cut(s)	2064
BsiHKAI	GWGCWC	1 cut(s)	1989
BsiHKCI	CYCGRG	2 cut(s)	193, 1968
BsiSI	CCGG	4 cut(s)	647, 1364, 1594, 2418
BslFI	GGGAC	2 cut(s)	83, 2032
BslI	CCNNNNNNNGG	6 cut(s)	1202, 1370, 1511, 1821, 2293, 2417
BsmAI	GTCTC	3 cut(s)	17, 1062, 1336
BsmFI	GGGAC	2 cut(s)	83, 2032
BsmI	GAATGC	3 cut(s)	1184, 1702, 1778
BsnI	GGCC	6 cut(s)	56, 1291, 1814, 2129, 2279, 2421
Bso31I	GGTCTC	2 cut(s)	17, 1336
BsoBI	CYCGRG	2 cut(s)	193, 1968
Bsp119I	TTCGAA	1 cut(s)	994
Bsp1286I	GDGCHC	2 cut(s)	1989, 2412
Bsp13I	TCCGGA	1 cut(s)	646
Bsp143I	GATC	4 cut(s)	181, 1728, 2061, 2267
Bsp19I	CCATGG	2 cut(s)	162, 1898
BspACI	CCGC	3 cut(s)	628, 928, 2241
BspANI	GGCC	6 cut(s)	56, 1291, 1814, 2129, 2279, 2421
BspCNI	CTCAG	4 cut(s)	234, 608, 1223, 1445
BspDI	ATCGAT	1 cut(s)	2064
BspEI	TCCGGA	1 cut(s)	646
BspHI	TCATGA	2 cut(s)	1692, 1725
BspLI	GGNNCC	5 cut(s)	926, 1278, 1375, 1813, 1896
BspMAI	CTGCAG	2 cut(s)	2499, 2579
BspMI	ACCTGC	2 cut(s)	1482, 2210
BspPI	GGATC	1 cut(s)	2275
BspQI	GCTCTTC	3 cut(s)	637, 660, 996
BspT104I	TTCGAA	1 cut(s)	994
BspT107I	GGYRCC	1 cut(s)	1373
BspTI	CTTAAG	1 cut(s)	2003
BspTNI	GGTCTC	2 cut(s)	17, 1336
BsrBI	CCGCTC	1 cut(s)	630
BsrDI	GCAATG	4 cut(s)	473, 1014, 1017, 2593
BsrFI	RCCGGY	1 cut(s)	1593
BsrI	ACTGG	3 cut(s)	715, 1292, 2674
BssAI	RCCGGY	1 cut(s)	1593
BssECI	CCNNGG	5 cut(s)	51, 162, 1084, 1898, 2274
BssMI	GATC	4 cut(s)	181, 1728, 2061, 2267
BssSI	CACGAG	1 cut(s)	135
BssT1I	CCWWGG	3 cut(s)	162, 1084, 1898
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	6 cut(s)	53, 922, 1293, 1409, 2276, 2615
Bst4CI	ACNGT	6 cut(s)	208, 936, 1347, 1657, 1837, 2023
Bst6I	CTCTTC	6 cut(s)	58, 637, 644, 660, 841, 996
BstAFI	CTTAAG	1 cut(s)	2003
BstBI	TTCGAA	1 cut(s)	994
BstC8I	GCNNGC	4 cut(s)	814, 1014, 1893, 1942
BstDEI	CTNAG	8 cut(s)	214, 221, 481, 595, 1091, 1210, 1432, 2543
BstDSI	CCRYGG	2 cut(s)	162, 1898
BstEII	GGTNACC	1 cut(s)	1191
BstENI	CCTNNNNNAGG	1 cut(s)	2291
BstF5I	GGATG	7 cut(s)	655, 774, 1564, 1692, 1815, 2033, 2610
BstKTI	GATC	4 cut(s)	184, 1731, 2064, 2270
BstMAI	GTCTC	3 cut(s)	17, 1062, 1336
BstMBI	GATC	4 cut(s)	181, 1728, 2061, 2267
BstMWI	GCNNNNNNNGC	6 cut(s)	1013, 1373, 1669, 1984, 2174, 2329
BstNI	CCWGG	6 cut(s)	53, 922, 1293, 1409, 2276, 2615
BstNSI	RCATGY	4 cut(s)	856, 1123, 1717, 2196
BstPAI	GACNNNNGTC	1 cut(s)	75
BstPI	GGTNACC	1 cut(s)	1191
BstSCI	CCNGG	6 cut(s)	51, 920, 1291, 1407, 2274, 2613
BstSFI	CTRYAG	4 cut(s)	117, 1171, 2495, 2575
BstX2I	RGATCY	2 cut(s)	181, 2267
BstXI	CCANNNNNNTGG	3 cut(s)	169, 1287, 1320
BstYI	RGATCY	2 cut(s)	181, 2267
Bsu15I	ATCGAT	1 cut(s)	2064
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	6 cut(s)	56, 1291, 1814, 2129, 2279, 2421
BsuTUI	ATCGAT	1 cut(s)	2064
BtgI	CCRYGG	2 cut(s)	162, 1898
BtsCI	GGATG	7 cut(s)	655, 774, 1564, 1692, 1815, 2033, 2610
BtsI	GCAGTG	2 cut(s)	387, 2650
BtsIMutI	CAGTG	4 cut(s)	308, 387, 1653, 2650
BveI	ACCTGC	2 cut(s)	1482, 2210
Cac8I	GCNNGC	4 cut(s)	814, 1014, 1893, 1942
CciI	TCATGA	2 cut(s)	1692, 1725
Cfr10I	RCCGGY	1 cut(s)	1593
Cfr13I	GGNCC	4 cut(s)	1277, 1812, 2222, 2393
ClaI	ATCGAT	1 cut(s)	2064
CseI	GACGC	1 cut(s)	1013
CsiI	ACCWGGT	1 cut(s)	920
Csp6I	GTAC	3 cut(s)	847, 2056, 2560
CspAI	ACCGGT	1 cut(s)	1593
CviQI	GTAC	3 cut(s)	847, 2056, 2560
DdeI	CTNAG	8 cut(s)	214, 221, 481, 595, 1091, 1210, 1432, 2543
DpnI	GATC	4 cut(s)	183, 1730, 2063, 2269
DpnII	GATC	4 cut(s)	181, 1728, 2061, 2267
DraI	TTTAAA	1 cut(s)	726
EaeI	YGGCCR	3 cut(s)	54, 1289, 2277
Eam1104I	CTCTTC	6 cut(s)	58, 637, 644, 660, 841, 996
EarI	CTCTTC	6 cut(s)	58, 637, 644, 660, 841, 996
Eco130I	CCWWGG	3 cut(s)	162, 1084, 1898
Eco147I	AGGCCT	1 cut(s)	2129
Eco24I	GRGCYC	1 cut(s)	2412
Eco31I	GGTCTC	2 cut(s)	17, 1336
Eco32I	GATATC	1 cut(s)	1450
Eco47I	GGWCC	3 cut(s)	1277, 2222, 2393
Eco57I	CTGAAG	5 cut(s)	692, 975, 1625, 1687, 1694
Eco88I	CYCGRG	2 cut(s)	193, 1968
Eco91I	GGTNACC	1 cut(s)	1191
EcoNI	CCTNNNNNAGG	1 cut(s)	2291
EcoO109I	RGGNCCY	1 cut(s)	2222
EcoO65I	GGTNACC	1 cut(s)	1191
EcoRI	GAATTC	3 cut(s)	43, 1079, 2538
EcoRII	CCWGG	6 cut(s)	51, 920, 1291, 1407, 2274, 2613
EcoRV	GATATC	1 cut(s)	1450
EcoT14I	CCWWGG	3 cut(s)	162, 1084, 1898
EcoT38I	GRGCYC	1 cut(s)	2412
ErhI	CCWWGG	3 cut(s)	162, 1084, 1898
FalI	AAGNNNNNCTT	6 cut(s)	171, 203, 1933, 1965, 2536, 2568
FaqI	GGGAC	2 cut(s)	83, 2032
FauI	CCCGC	1 cut(s)	635
FauNDI	CATATG	3 cut(s)	462, 1402, 1519
FbaI	TGATCA	1 cut(s)	1728
FblI	GTMKAC	2 cut(s)	1542, 2488
FokI	GGATG	7 cut(s)	662, 781, 1571, 1699, 1802, 2040, 2597
FriOI	GRGCYC	1 cut(s)	2412
FspBI	CTAG	6 cut(s)	972, 1025, 1916, 2072, 2238, 2303
GsaI	CCCAGC	1 cut(s)	91
HaeIII	GGCC	6 cut(s)	56, 1291, 1814, 2129, 2279, 2421
HapII	CCGG	4 cut(s)	647, 1364, 1594, 2418
HgaI	GACGC	1 cut(s)	1013
HincII	GTYRAC	2 cut(s)	592, 832
HindII	GTYRAC	2 cut(s)	592, 832
HindIII	AAGCTT	2 cut(s)	615, 1198
HpaII	CCGG	4 cut(s)	647, 1364, 1594, 2418
HphI	GGTGA	7 cut(s)	52, 358, 520, 1185, 1583, 1825, 2663
Hpy166II	GTNNAC	8 cut(s)	211, 592, 832, 1074, 1323, 1543, 2311, 2489
Hpy8I	GTNNAC	8 cut(s)	211, 592, 832, 1074, 1323, 1543, 2311, 2489
HpyAV	CCTTC	9 cut(s)	393, 827, 1234, 1387, 1516, 1669, 1711, 2140, 2382
HpyCH4III	ACNGT	6 cut(s)	208, 936, 1347, 1657, 1837, 2023
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1013, 1373, 1669, 1984, 2174, 2329
HpyF3I	CTNAG	8 cut(s)	214, 221, 481, 595, 1091, 1210, 1432, 2543
Kpn2I	TCCGGA	1 cut(s)	646
Ksp22I	TGATCA	1 cut(s)	1728
Kzo9I	GATC	4 cut(s)	181, 1728, 2061, 2267
LguI	GCTCTTC	3 cut(s)	637, 660, 996
LmnI	GCTCC	7 cut(s)	113, 684, 1315, 1900, 2329, 2372, 2603
LweI	GCATC	3 cut(s)	640, 990, 1549
MabI	ACCWGGT	1 cut(s)	920
MaeI	CTAG	6 cut(s)	972, 1025, 1916, 2072, 2238, 2303
MalI	GATC	4 cut(s)	183, 1730, 2063, 2269
MbiI	CCGCTC	1 cut(s)	630
MboI	GATC	4 cut(s)	181, 1728, 2061, 2267
MfeI	CAATTG	1 cut(s)	1443
MflI	RGATCY	2 cut(s)	181, 2267
MhlI	GDGCHC	2 cut(s)	1989, 2412
MlsI	TGGCCA	3 cut(s)	56, 1291, 2279
MluNI	TGGCCA	3 cut(s)	56, 1291, 2279
MlyI	GAGTC	4 cut(s)	818, 827, 1318, 1980
MmeI	TCCRAC	1 cut(s)	2005
Mox20I	TGGCCA	3 cut(s)	56, 1291, 2279
MroI	TCCGGA	1 cut(s)	646
MroXI	GAANNNNTTC	2 cut(s)	1700, 1863
MscI	TGGCCA	3 cut(s)	56, 1291, 2279
MseI	TTAA	6 cut(s)	276, 582, 725, 1152, 2004, 2361
MslI	CAYNNNNRTG	3 cut(s)	1154, 1260, 1952
Msp20I	TGGCCA	3 cut(s)	56, 1291, 2279
MspA1I	CMGCKG	2 cut(s)	1463, 1565
MspCI	CTTAAG	1 cut(s)	2003
MspI	CCGG	4 cut(s)	647, 1364, 1594, 2418
MspR9I	CCNGG	6 cut(s)	53, 922, 1293, 1409, 2276, 2615
MunI	CAATTG	1 cut(s)	1443
Mva1269I	GAATGC	3 cut(s)	1184, 1702, 1778
MvaI	CCWGG	6 cut(s)	53, 922, 1293, 1409, 2276, 2615
MwoI	GCNNNNNNNGC	6 cut(s)	1013, 1373, 1669, 1984, 2174, 2329
NcoI	CCATGG	2 cut(s)	162, 1898
NdeI	CATATG	3 cut(s)	462, 1402, 1519
NdeII	GATC	4 cut(s)	181, 1728, 2061, 2267
NlaIV	GGNNCC	5 cut(s)	926, 1278, 1375, 1813, 1896
NmuCI	GTSAC	8 cut(s)	508, 796, 1191, 1396, 1651, 1831, 2114, 2659
NspI	RCATGY	4 cut(s)	856, 1123, 1717, 2196
NspV	TTCGAA	1 cut(s)	994
PaeR7I	CTCGAG	2 cut(s)	193, 1968
PagI	TCATGA	2 cut(s)	1692, 1725
PceI	AGGCCT	1 cut(s)	2129
PciSI	GCTCTTC	3 cut(s)	637, 660, 996
PctI	GAATGC	3 cut(s)	1184, 1702, 1778
PdmI	GAANNNNTTC	2 cut(s)	1700, 1863
PfeI	GAWTC	6 cut(s)	227, 575, 1360, 1417, 1912, 2566
PflMI	CCANNNNNTGG	1 cut(s)	1821
PfoI	TCCNGGA	1 cut(s)	2613
PinAI	ACCGGT	1 cut(s)	1593
PleI	GAGTC	4 cut(s)	818, 827, 1318, 1979
PpsI	GAGTC	4 cut(s)	818, 827, 1318, 1979
PpuMI	RGGWCCY	1 cut(s)	2222
PshAI	GACNNNNGTC	1 cut(s)	75
PshBI	ATTAAT	1 cut(s)	1152
Psp5II	RGGWCCY	1 cut(s)	2222
Psp6I	CCWGG	6 cut(s)	51, 920, 1291, 1407, 2274, 2613
PspEI	GGTNACC	1 cut(s)	1191
PspFI	CCCAGC	1 cut(s)	87
PspGI	CCWGG	6 cut(s)	51, 920, 1291, 1407, 2274, 2613
PspN4I	GGNNCC	5 cut(s)	926, 1278, 1375, 1813, 1896
PspPI	GGNCC	4 cut(s)	1277, 1812, 2222, 2393
PspPPI	RGGWCCY	1 cut(s)	2222
PspXI	VCTCGAGB	1 cut(s)	193
PstI	CTGCAG	2 cut(s)	2499, 2579
PsuI	RGATCY	2 cut(s)	181, 2267
PvuII	CAGCTG	2 cut(s)	1463, 1565
RsaI	GTAC	3 cut(s)	848, 2057, 2561
RsaNI	GTAC	3 cut(s)	847, 2056, 2560
RseI	CAYNNNNRTG	3 cut(s)	1154, 1260, 1952
SapI	GCTCTTC	3 cut(s)	637, 660, 996
SaqAI	TTAA	6 cut(s)	276, 582, 725, 1152, 2004, 2361
Sau3AI	GATC	4 cut(s)	181, 1728, 2061, 2267
Sau96I	GGNCC	4 cut(s)	1277, 1812, 2222, 2393
SchI	GAGTC	4 cut(s)	818, 827, 1318, 1980
ScrFI	CCNGG	6 cut(s)	53, 922, 1293, 1409, 2276, 2615
SduI	GDGCHC	2 cut(s)	1989, 2412
SexAI	ACCWGGT	1 cut(s)	920
SfaNI	GCATC	3 cut(s)	640, 990, 1549
SfcI	CTRYAG	4 cut(s)	117, 1171, 2495, 2575
Sfr274I	CTCGAG	2 cut(s)	193, 1968
SfuI	TTCGAA	1 cut(s)	994
SinI	GGWCC	3 cut(s)	1277, 2222, 2393
SlaI	CTCGAG	2 cut(s)	193, 1968
SmiMI	CAYNNNNRTG	3 cut(s)	1154, 1260, 1952
SmlI	CTYRAG	4 cut(s)	193, 1059, 1968, 2003
SmoI	CTYRAG	4 cut(s)	193, 1059, 1968, 2003
SseBI	AGGCCT	1 cut(s)	2129
SsiI	CCGC	3 cut(s)	628, 928, 2241
SspMI	CTAG	6 cut(s)	972, 1025, 1916, 2072, 2238, 2303
StuI	AGGCCT	1 cut(s)	2129
StyD4I	CCNGG	6 cut(s)	51, 920, 1291, 1407, 2274, 2613
StyI	CCWWGG	3 cut(s)	162, 1084, 1898
TaaI	ACNGT	6 cut(s)	208, 936, 1347, 1657, 1837, 2023
TaqI	TCGA	5 cut(s)	194, 888, 994, 1969, 2064
TaqII	GACCGA	1 cut(s)	476
TatI	WGTACW	2 cut(s)	846, 2559
TauI	GCSGC	1 cut(s)	2244
TfiI	GAWTC	6 cut(s)	227, 575, 1360, 1417, 1912, 2566
Tru1I	TTAA	6 cut(s)	276, 582, 725, 1152, 2004, 2361
Tru9I	TTAA	6 cut(s)	276, 582, 725, 1152, 2004, 2361
TscAI	CASTG	4 cut(s)	315, 394, 1660, 2650
TseFI	GTSAC	8 cut(s)	508, 796, 1191, 1396, 1651, 1831, 2114, 2659
Tsp45I	GTSAC	8 cut(s)	508, 796, 1191, 1396, 1651, 1831, 2114, 2659
TspRI	CASTG	4 cut(s)	315, 394, 1660, 2650
Van91I	CCANNNNNTGG	1 cut(s)	1821
Vha464I	CTTAAG	1 cut(s)	2003
VpaK11BI	GGWCC	3 cut(s)	1277, 2222, 2393
VspI	ATTAAT	1 cut(s)	1152
XagI	CCTNNNNNAGG	1 cut(s)	2291
XapI	RAATTY	6 cut(s)	43, 361, 427, 1079, 2100, 2538
XbaI	TCTAGA	1 cut(s)	2071
XceI	RCATGY	4 cut(s)	856, 1123, 1717, 2196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1091
XhoI	CTCGAG	2 cut(s)	193, 1968
XmiI	GTMKAC	2 cut(s)	1542, 2488
XmnI	GAANNNNTTC	2 cut(s)	1700, 1863
XspI	CTAG	6 cut(s)	972, 1025, 1916, 2072, 2238, 2303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.