Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005524

Physical Location & Seq

Genomic Coordinates Forward (+)

3511506 .. 3512463

Gene Structure 958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010677

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCGTAAGTATCTTAAGTTTTTAGAGTCGAGTGATTATCTTAACGTACAACTACAATATGCAGGAGAACGAGTTCAGAGTAATTGGGCTCGGCTGGTGCTGGCTCCATGGTTAGTAGTGATTCTAGTAGTAACAGCCACTTTCACAGCAAGCCTCACTTCCATGATGACCATCTCTCGAGTCCAGCCATCTGTGCTCAATGTGGAAACACTGAAGAAAGAAAATGGAACTGTCGGATGTAATGGCAACTCTTTTATTGTTAGGTACCTGATCAATGTTCTAGCGTTCAGACCAGAAAACATCAAGAGAATTGCCTCCATAAGTGACTACCCAAAGGCCTTCCAGAATGGAGATATTCAAGCAGCTTTCTTCGCCGCCCCCCATGCTAAAGTCTTCCTGGCATGTTACTGCAAGGGCTATATGAAGACAGGTCCTATATACAAGCCTAGCGGCTTTGCATTTGCTTTTCCAAAGGGGTCTCCTCTGGCCATTGAAATGTCAAAGGCAATCCTACATGTAAATGAGAAGAAGCAAGTGGAGCTATTAGAAAAACAAATGCTTTCCTCCTTTAACTGCTCCCCTGCACTGAACTTGAAAGATGGTCCAATTGGTTATGAGCCCTTTTCCGGCCTATTTCTAATTTCAGGTTTGGTTTGTGCATTTGCCCTATTGCTTACGAGTGGGCGTATGGCCGGTAGACATCTGCAGAATATGAGCAGCATAGGAGCAATACTAATGAAAACAGGAATTCTAAGATGGGCTTTTATGTACTTGATTCAGAGCTGCAGAAAATCTCAAAAGCATTGCTCCACAGCCTCCATCCTGGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

278

Amino Acids

30.72

Weight (kDa)

9.61

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lig_chan	PF00060	21 - 217	3.7e-13	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005524)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34350 FvH4_2g34370
malus_domestica	MD15G1082100.v1.1
prunus_persica	Prupe.1G434800_v2.0.a1
pyrus_communis	pycom15g07690
rosa_chinensis	RchiOBHm_Chr6g0308001 RchiOBHm_Chr6g0308011
rosa_laevigata	RLG00000010676 RLG00000010677 RLG00000010678 RLG00000010679
rosa_multiflora	Rmu_sc0006237.1_g000009 Rmu_sc0006237.1_g000010
rosa_roxburghii	Rroxscaffold_7G00160680 Rroxscaffold_7G00160690
rosa_rugosa	Rorug06G0362900 Rorug06G0363000
rosa_samantha	Rh6BG482500 Rh6BG482700 Rh6CG487800 Rh6CG488000 Rh6DG474100 Rh6DG474200
rosa_wichuraiana	Rw6G041170 Rw6G041180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	697
AciI	CCGC	2 cut(s)	375, 450
AcoI	YGGCCR	2 cut(s)	486, 690
AcsI	RAATTY	1 cut(s)	747
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	3 cut(s)	48, 266, 770
AfiI	CCNNNNNNNGG	1 cut(s)	626
AflII	CTTAAG	1 cut(s)	14
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	3 cut(s)	359, 494, 595
AjnI	CCWGG	2 cut(s)	396, 822
AloI	GAACNNNNNNTCC	2 cut(s)	57, 89
AluBI	AGCT	3 cut(s)	365, 541, 783
AluI	AGCT	3 cut(s)	365, 541, 783
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	483
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	4 cut(s)	336, 486, 628, 690
ApeKI	GCWGC	3 cut(s)	362, 717, 783
ApoI	RAATTY	1 cut(s)	747
Asp700I	GAANNNNTTC	1 cut(s)	72
Asp718I	GGTACC	1 cut(s)	264
AspS9I	GGNCC	2 cut(s)	431, 602
AvaI	CYCGRG	1 cut(s)	177
AvaII	GGWCC	2 cut(s)	431, 602
BalI	TGGCCA	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	264
BanII	GRGCYC	2 cut(s)	91, 621
BbsI	GAAGAC	2 cut(s)	385, 431
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	374, 729, 770
BccI	CCATC	5 cut(s)	179, 196, 593, 750, 827
BciT130I	CCWGG	2 cut(s)	398, 824
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	483
BfaI	CTAG	3 cut(s)	125, 281, 447
BfmI	CTRYAG	2 cut(s)	704, 784
BfrI	CTTAAG	1 cut(s)	14
BisI	GCNGC	5 cut(s)	363, 375, 451, 718, 784
BlsI	GCNGC	5 cut(s)	364, 376, 452, 719, 785
Bme1390I	CCNGG	2 cut(s)	398, 824
Bme18I	GGWCC	2 cut(s)	431, 602
BmeT110I	CYCGRG	1 cut(s)	177
BmgT120I	GGNCC	2 cut(s)	431, 602
BmiI	GGNNCC	2 cut(s)	105, 266
BmrFI	CCNGG	2 cut(s)	398, 824
BpiI	GAAGAC	2 cut(s)	385, 431
BsaBI	GATNNNNATC	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse118I	RCCGGY	1 cut(s)	692
Bse3DI	GCAATG	1 cut(s)	802
Bse8I	GATNNNNATC	1 cut(s)	170
BseBI	CCWGG	2 cut(s)	398, 824
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	2 cut(s)	242, 819
BseJI	GATNNNNATC	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseMI	GCAATG	1 cut(s)	802
BseRI	GAGGAG	1 cut(s)	471
BseXI	GCAGC	3 cut(s)	374, 729, 770
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	4 cut(s)	338, 488, 630, 692
BshNI	GGYRCC	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	627, 693
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmAI	GTCTC	1 cut(s)	483
BsnI	GGCC	4 cut(s)	338, 488, 630, 692
Bso31I	GGTCTC	1 cut(s)	483
BsoBI	CYCGRG	1 cut(s)	177
Bsp1286I	GDGCHC	3 cut(s)	91, 198, 621
Bsp143I	GATC	1 cut(s)	270
Bsp19I	CCATGG	1 cut(s)	107
BspACI	CCGC	2 cut(s)	375, 450
BspANI	GGCC	4 cut(s)	338, 488, 630, 692
BspLI	GGNNCC	2 cut(s)	105, 266
BspMAI	CTGCAG	2 cut(s)	708, 788
BspT107I	GGYRCC	1 cut(s)	264
BspTI	CTTAAG	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	802
BsrFI	RCCGGY	1 cut(s)	692
BssAI	RCCGGY	1 cut(s)	692
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	398, 824
Bst4CI	ACNGT	1 cut(s)	232
BstAFI	CTTAAG	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	102, 151
BstDEI	CTNAG	1 cut(s)	752
BstDSI	CCRYGG	1 cut(s)	107
BstF5I	GGATG	2 cut(s)	242, 819
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 371, 383, 538
BstNI	CCWGG	2 cut(s)	398, 824
BstNSI	RCATGY	2 cut(s)	405, 518
BstSCI	CCNGG	2 cut(s)	396, 822
BstSFI	CTRYAG	2 cut(s)	704, 784
BstV1I	GCAGC	3 cut(s)	374, 729, 770
BstV2I	GAAGAC	2 cut(s)	385, 431
BsuRI	GGCC	4 cut(s)	338, 488, 630, 692
BtgI	CCRYGG	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	242, 819
BtsIMutI	CAGTG	2 cut(s)	209, 584
Cac8I	GCNNGC	2 cut(s)	102, 151
Cfr10I	RCCGGY	1 cut(s)	692
Cfr13I	GGNCC	2 cut(s)	431, 602
Csp6I	GTAC	3 cut(s)	47, 265, 769
CviAII	CATG	5 cut(s)	108, 163, 383, 402, 515
CviQI	GTAC	3 cut(s)	47, 265, 769
DdeI	CTNAG	1 cut(s)	752
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
EaeI	YGGCCR	2 cut(s)	486, 690
Eco130I	CCWWGG	1 cut(s)	107
Eco147I	AGGCCT	1 cut(s)	338
Eco24I	GRGCYC	2 cut(s)	91, 621
Eco31I	GGTCTC	1 cut(s)	483
Eco47I	GGWCC	2 cut(s)	431, 602
Eco57I	CTGAAG	1 cut(s)	233
Eco88I	CYCGRG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	747
EcoRII	CCWGG	2 cut(s)	396, 822
EcoT14I	CCWWGG	1 cut(s)	107
EcoT38I	GRGCYC	2 cut(s)	91, 621
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	5 cut(s)	111, 166, 386, 405, 518
FalI	AAGNNNNNCTT	4 cut(s)	142, 174, 745, 777
FatI	CATG	5 cut(s)	107, 162, 382, 401, 514
FbaI	TGATCA	1 cut(s)	270
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	5 cut(s)	363, 375, 451, 718, 784
FokI	GGATG	2 cut(s)	249, 806
FriOI	GRGCYC	2 cut(s)	91, 621
Fsp4HI	GCNGC	5 cut(s)	363, 375, 451, 718, 784
FspBI	CTAG	3 cut(s)	125, 281, 447
GluI	GCNGC	5 cut(s)	363, 375, 451, 718, 784
HaeIII	GGCC	4 cut(s)	338, 488, 630, 692
HapII	CCGG	2 cut(s)	627, 693
Hin1II	CATG	5 cut(s)	111, 166, 386, 405, 518
HinfI	GANTC	4 cut(s)	26, 121, 180, 775
HpaII	CCGG	2 cut(s)	627, 693
Hpy166II	GTNNAC	1 cut(s)	698
Hpy188I	TCNGA	4 cut(s)	78, 236, 290, 780
Hpy188III	TCNNGA	3 cut(s)	177, 304, 343
Hpy8I	GTNNAC	1 cut(s)	698
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	7 cut(s)	62, 411, 458, 584, 659, 706, 786
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 371, 383, 538
HpyF3I	CTNAG	1 cut(s)	752
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	5 cut(s)	111, 166, 386, 405, 518
KpnI	GGTACC	1 cut(s)	268
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	5 cut(s)	109, 538, 581, 725, 812
Lsp1109I	GCAGC	3 cut(s)	374, 729, 770
MaeI	CTAG	3 cut(s)	125, 281, 447
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	3 cut(s)	130, 323, 404
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	5 cut(s)	226, 361, 385, 436, 538
MfeI	CAATTG	1 cut(s)	606
MhlI	GDGCHC	3 cut(s)	91, 198, 621
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	5 cut(s)	82, 309, 606, 639, 747
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	2 cut(s)	35, 189
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	5 cut(s)	164, 325, 492, 574, 826
Mox20I	TGGCCA	1 cut(s)	488
MroXI	GAANNNNTTC	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	3 cut(s)	15, 42, 570
MslI	CAYNNNNRTG	3 cut(s)	161, 494, 519
Msp20I	TGGCCA	1 cut(s)	488
MspCI	CTTAAG	1 cut(s)	14
MspI	CCGG	2 cut(s)	627, 693
MspR9I	CCNGG	2 cut(s)	398, 824
MunI	CAATTG	1 cut(s)	606
MvaI	CCWGG	2 cut(s)	398, 824
MwoI	GCNNNNNNNGC	4 cut(s)	193, 371, 383, 538
NcoI	CCATGG	1 cut(s)	107
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	5 cut(s)	111, 166, 386, 405, 518
NlaIV	GGNNCC	2 cut(s)	105, 266
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	2 cut(s)	405, 518
PaeR7I	CTCGAG	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	338
PciI	ACATGT	1 cut(s)	514
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	121, 775
PfoI	TCCNGGA	1 cut(s)	822
PkrI	GCNGC	5 cut(s)	364, 376, 452, 719, 785
PleI	GAGTC	2 cut(s)	34, 188
PpsI	GAGTC	2 cut(s)	34, 188
PpuMI	RGGWCCY	1 cut(s)	431
PscI	ACATGT	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	396, 822
PspGI	CCWGG	2 cut(s)	396, 822
PspN4I	GGNNCC	2 cut(s)	105, 266
PspPI	GGNCC	2 cut(s)	431, 602
PspPPI	RGGWCCY	1 cut(s)	431
PstI	CTGCAG	2 cut(s)	708, 788
RsaI	GTAC	3 cut(s)	48, 266, 770
RsaNI	GTAC	3 cut(s)	47, 265, 769
RseI	CAYNNNNRTG	3 cut(s)	161, 494, 519
SaqAI	TTAA	3 cut(s)	15, 42, 570
SatI	GCNGC	5 cut(s)	363, 375, 451, 718, 784
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	2 cut(s)	431, 602
SchI	GAGTC	2 cut(s)	35, 189
ScrFI	CCNGG	2 cut(s)	398, 824
SduI	GDGCHC	3 cut(s)	91, 198, 621
SetI	ASST	8 cut(s)	48, 266, 270, 367, 433, 543, 649, 785
SfcI	CTRYAG	2 cut(s)	704, 784
Sfr274I	CTCGAG	1 cut(s)	177
SinI	GGWCC	2 cut(s)	431, 602
SlaI	CTCGAG	1 cut(s)	177
SmiMI	CAYNNNNRTG	3 cut(s)	161, 494, 519
SmlI	CTYRAG	2 cut(s)	14, 177
SmoI	CTYRAG	2 cut(s)	14, 177
Sse9I	AATT	5 cut(s)	82, 309, 606, 639, 747
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	2 cut(s)	375, 450
SspMI	CTAG	3 cut(s)	125, 281, 447
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	2 cut(s)	396, 822
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	232
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	29, 178
TasI	AATT	5 cut(s)	82, 309, 606, 639, 747
TatI	WGTACW	1 cut(s)	768
TauI	GCSGC	2 cut(s)	377, 453
TfiI	GAWTC	2 cut(s)	121, 775
Tru1I	TTAA	3 cut(s)	15, 42, 570
Tru9I	TTAA	3 cut(s)	15, 42, 570
TscAI	CASTG	2 cut(s)	216, 591
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	3 cut(s)	362, 717, 783
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	437, 752
TspRI	CASTG	2 cut(s)	216, 591
Vha464I	CTTAAG	1 cut(s)	14
VpaK11BI	GGWCC	2 cut(s)	431, 602
XapI	RAATTY	1 cut(s)	747
XceI	RCATGY	2 cut(s)	405, 518
XhoI	CTCGAG	1 cut(s)	177
XmiI	GTMKAC	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	3 cut(s)	125, 281, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.