Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003545

Physical Location & Seq

Genomic Coordinates Reverse (-)

9480415 .. 9484479

Gene Structure 4065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011443

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2322 bp

ATGGCGGATCCGACTGTGATAAGTTTGAGGCCTGGCGGCGCTATTGGCCTGCGCGCCCCACGATTCCTCACACCTCGCCTCGATTCCTCTTCAGAGCCTCAATCCTCCAATGCTGCTCTCTCTTCCGCCTTCAAGACTGGTGACTTGCGGTTTGAAGGTCGTGAGCGTGTTCGATATACTAGAGATCAGCTAATGCAGCTTAGAGAGGCTGCCACTACTATCCCCGAGGGTATTTTGAAGATTAAACAAGAAATAGAGGCCGAGTTTGGTGGAGATGATCCTACTTGGGGACGCACAGATGCCAACCCACAGCCTCAACCTCAGCCTCAATCGCAAGGTCGTTATTCCGAGTTAGATAACCGTGATTGGCGTGGTCGATCTGGACAGCTACCTGCTTCTGAAGAGGAAAGAAATGATTTTTCAAGGCGACAGGGATTGAATAACCAGCAGGACCAACAATTTGCAAGGCCACAAATTTCTGGTAACCAAGTGGCAGGACCTGCTCCTGTTCTCCTTAAGGCGGAGGTTCCATGGTCAGCTCGAAGAGCAAATCTCTCTGAGAAGGACCGTGTATTGAAGACAGTGAAAGGTATACTGAACAAATTGACCCCAGAGAAGTTTGATGTTCTCAAGGGTCAACTAATTGACTCTGGAATCACAAATCCAGATATTTTGAAGGATGTTATCTTTCTGATATTTGATAAGGCTGTGCTGGAGCCAACATTTTGTCCGATGTATGCCCTTTTATGTGCGGATCTTAATGCGAAACTTCCTCCTTTTCCACCTGAGGAGCCTGGTGGGAAAGAAATCACTTTTAAACGAGTCCTGTTGAATAACTGCCAGGAGGCTTTTGAAGGTGCTGACAACCTAAGGGCAGAAATTAGGCAGATGACTGCTCCTGAGCAAGAAATGGAATGCAGAGATAAAGAACGAATGCTTAAGTTGCGAACTCTAGGAAACATACGCCTTATTGGGGAACTTTTAAAGCAGAAGATGGTGCCTGAAAAGATTGTACACCATATTGTTCAGGAGCTTCTGGGATATGATGGAAAAACGTGCCCTGCTGAAGAGAATGTGGAGGCAATATGTCAGTTTTTCAACACCATTGGTAAGCAGCTTGATGAGAGCCAAAAATCTCGCCGAATCAACGATACCTATTTCAGTAGGTTGAAGGAACTGACTACAAACTCCCAACTTGCACCACGGTTGAGGTTCATGGTCCGTAATGTTCTTGATATGCGGGCCAACAACTGGATTCCAAGACGGGAAGAGGTGAAAGCAAAGACTATAACTGAAATTCATTCAGAAGCAGAAAAGAACTTAGGGTTGCGTCCAGGTGCAACGGCAACGATAAGGAATGCTCGTATTGCAGCTGCCTCTGGGGATTTGAGCCCCGGAGGTCTTCCTGCTACCCGGCCTGGCTATATGCCTGGAATGCCTGGGAGCAGGAAAATGCCGGGAATGCCTGGACTTGATTCTGACAATTGGGAGGTTTATCGATCTAGATCAATGACCAAGCGCGATGGTTTGGTTAACTCTCCATCTGGAGGACGTGTCCAGCCACCTTTGATCAGCAAAGCACCGTCTCTTAATTCAAAATTTTTACCTCAAGGCAGTGGTGGAATCATAACTGGGAAAACAAGTGCCTTGTTGCAGGGCTCTGGTGGTCCTCCTCGAACTAATTTGATTTCTGGAGTTGAACCTCTTACTCAAAACGCCAAGCCTACCGTTCCAGCTGCATCAGCAGTTTCTTCTGAGAAGGCTCTGGCCCCTGAAATTGGACCAACTTCTGCTAAACCTCTGATTCCTGCAACAGTACCAAATTCTGCTGCTCTTCTTAAAAAAACTGTATCCCTGCTGGAAGAATATTTCAGTGTTCGGATTCTCGACGAGGCACTTCAATGTGTGGAGGAGCTGAAAGCCCCAGCCTACCATCCGGAGTTTGTTAAAGAAGCTATTGCTCTTTCTCTGGATAAGAGCCCACCATGTGTAGAACCGGTCATAAAACTTCTCGAGTACCTGTTCAGTAAAAACGTTTTGACATCGAGAGATATAGGGACTGGTTGCCTTTTATATGGGTCAATGTTGGATGAAATCGGCATTGATTTGCCGAAAGCACCAAATAATTTTGGTGAGATTATTGGGAAGTTGGCTCTGGCAGGGGCATTGGACTTCAAGGTTGTGAAGGAAATCCTTAAGAAGGTGGAAGATGACATGTATCAGTCAGCCATTTTTGGTGCTGCTATGAAGAGCATTACATCGCAAGATTTTTTGGCTAGCCAGGAAACTGAAATTCAGGCGTGTAAAAGTTTGCTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

774

Amino Acids

84.9

Weight (kDa)

8.47

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIF4G	PF02854	192 - 417	4.5e-54	MIF4G domain
MA3	PF02847	614 - 724	8.1e-25	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57870 AT5G57870
fragaria_vesca	FvH4_1g00720 FvH4_1g00720 FvH4_2g41200
malus_domestica	MD02G1005900.v1.1 MD02G1006000.v1.1 MD08G1055400.v1.1 MD15G1150600.v1.1
prunus_persica	Prupe.1G395100_v2.0.a1 Prupe.7G265100_v2.0.a1
pyrus_communis	pycom02g00490 pycom08g04550 pycom14g07580 pycom15g13480
rosa_chinensis	RchiOBHm_Chr2g0085441 RchiOBHm_Chr6g0299311
rosa_laevigata	RLG00000011443 RLG00000015688
rosa_multiflora	Rmu_sc0007908.1_g000012 Rmu_ssc0000374.1_g000005
rosa_roxburghii	Rroxscaffold_2G00155380 Rroxscaffold_7G00168790
rosa_rugosa	Rorug01G0460400 Rorug06G0287100
rosa_samantha	Rh2AG008600 Rh2BG009900 Rh2CG010400 Rh2DG010800 Rh6AG398600 Rh6BG407000 Rh6CG413000 Rh6DG399800
rosa_wichuraiana	Rw2G000830 Rw6G034890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	400, 508
AccB1I	GGYRCC	1 cut(s)	997
AccB7I	CCANNNNNTGG	1 cut(s)	1251
AccI	GTMKAC	1 cut(s)	592
AccII	CGCG	2 cut(s)	54, 1521
AccIII	TCCGGA	1 cut(s)	1936
AciI	CCGC	7 cut(s)	5, 36, 126, 148, 521, 752, 1240
AclI	AACGTT	1 cut(s)	2034
AclWI	GGATC	4 cut(s)	2, 15, 272, 762
AcsI	RAATTY	5 cut(s)	474, 1296, 1598, 1822, 2292
AcuI	CTGAAG	3 cut(s)	75, 420, 1086
AdeI	CACNNNGTG	1 cut(s)	1988
AfaI	GTAC	3 cut(s)	1014, 1818, 2018
AfiI	CCNNNNNNNGG	7 cut(s)	287, 520, 973, 1251, 1547, 1778, 2200
AflII	CTTAAG	3 cut(s)	515, 938, 2195
AflIII	ACRYGT	2 cut(s)	1552, 2214
AgeI	ACCGGT	1 cut(s)	1996
AjiI	CACGTC	1 cut(s)	1553
AjnI	CCWGG	9 cut(s)	31, 793, 840, 1333, 1417, 1429, 1438, 1465, 2280
Alw26I	GTCTC	1 cut(s)	1590
AlwI	GGATC	4 cut(s)	2, 15, 272, 762
AlwNI	CAGNNNCTG	1 cut(s)	500
Ama87I	CYCGRG	2 cut(s)	224, 2012
Aor13HI	TCCGGA	1 cut(s)	1936
AoxI	GGCC	7 cut(s)	29, 46, 258, 467, 1242, 1415, 1767
ApeKI	GCWGC	9 cut(s)	113, 196, 209, 1114, 1370, 1373, 1736, 1829, 2240
ApoI	RAATTY	5 cut(s)	474, 1296, 1598, 1822, 2292
ArsI	GACNNNNNNTTYG	4 cut(s)	134, 166, 443, 475
AsiGI	ACCGGT	1 cut(s)	1996
AspLEI	GCGC	4 cut(s)	41, 54, 56, 1521
AspS9I	GGNCC	8 cut(s)	451, 497, 565, 1219, 1242, 1667, 1768, 1781
AsuC2I	CCSGG	3 cut(s)	1395, 1414, 1458
AsuHPI	GGTGA	3 cut(s)	152, 1285, 2144
AsuNHI	GCTAGC	1 cut(s)	2276
AvaI	CYCGRG	2 cut(s)	224, 2012
AvaII	GGWCC	6 cut(s)	451, 497, 565, 1219, 1667, 1781
AxyI	CCTNAGG	2 cut(s)	786, 869
BaeGI	GKGCMC	1 cut(s)	1061
BamHI	GGATCC	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	997
BanII	GRGCYC	3 cut(s)	1394, 1661, 1982
BbsI	GAAGAC	2 cut(s)	584, 1394
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	9 cut(s)	100, 196, 208, 1126, 1360, 1382, 1723, 1816, 2227
BccI	CCATC	5 cut(s)	988, 1040, 1517, 1549, 1941
BceAI	ACGGC	1 cut(s)	1359
BciT130I	CCWGG	9 cut(s)	33, 795, 842, 1335, 1419, 1431, 1440, 1467, 2282
BciVI	GTATCC	1 cut(s)	1861
BclI	TGATCA	1 cut(s)	1569
BcnI	CCSGG	3 cut(s)	1395, 1414, 1458
BcoDI	GTCTC	1 cut(s)	1590
BfaI	CTAG	4 cut(s)	180, 953, 1503, 2277
BfoI	RGCGCY	1 cut(s)	42
BfrI	CTTAAG	3 cut(s)	515, 938, 2195
BfuAI	ACCTGC	2 cut(s)	400, 508
BfuI	GTATCC	1 cut(s)	1861
Bme18I	GGWCC	6 cut(s)	451, 497, 565, 1219, 1667, 1781
BmeT110I	CYCGRG	2 cut(s)	224, 2012
BmgBI	CACGTC	1 cut(s)	1553
BmgT120I	GGNCC	8 cut(s)	451, 497, 565, 1219, 1242, 1667, 1768, 1781
BmiI	GGNNCC	6 cut(s)	9, 528, 717, 792, 999, 1770
BmrI	ACTGGG	1 cut(s)	1641
BmsI	GCATC	2 cut(s)	289, 1748
BmtI	GCTAGC	1 cut(s)	2280
BmuI	ACTGGG	1 cut(s)	1641
BpiI	GAAGAC	2 cut(s)	584, 1394
BplI	GAGNNNNNCTC	2 cut(s)	537, 569
BpmI	CTGGAG	3 cut(s)	734, 1566, 1713
Bpu10I	CCTNAGC	2 cut(s)	321, 900
BpuEI	CTTGAG	2 cut(s)	614, 1593
BpuMI	CCSGG	3 cut(s)	1395, 1414, 1458
Bsa29I	ATCGAT	1 cut(s)	1498
BsaBI	GATNNNNATC	1 cut(s)	1504
BsaJI	CCNNGG	5 cut(s)	225, 530, 1202, 1393, 1439
BsaWI	WCCGGW	2 cut(s)	1936, 1996
BsaXI	ACNNNNNCTCC	2 cut(s)	1539, 1569
Bsc4I	CCNNNNNNNGG	7 cut(s)	287, 520, 973, 1251, 1547, 1778, 2200
Bse118I	RCCGGY	1 cut(s)	1996
Bse1I	ACTGG	4 cut(s)	142, 1256, 1636, 2065
Bse21I	CCTNAGG	2 cut(s)	786, 869
Bse8I	GATNNNNATC	1 cut(s)	1504
BseAI	TCCGGA	1 cut(s)	1936
BseBI	CCWGG	9 cut(s)	33, 795, 842, 1335, 1419, 1431, 1440, 1467, 2282
BseCI	ATCGAT	1 cut(s)	1498
BseDI	CCNNGG	5 cut(s)	225, 530, 1202, 1393, 1439
BseGI	GGATG	3 cut(s)	685, 1933, 2095
BseJI	GATNNNNATC	1 cut(s)	1504
BseLI	CCNNNNNNNGG	7 cut(s)	287, 520, 973, 1251, 1547, 1778, 2200
BseMII	CTCAG	5 cut(s)	335, 549, 777, 891, 1746
BseNI	ACTGG	4 cut(s)	142, 1256, 1636, 2065
BsePI	GCGCGC	1 cut(s)	52
BseRI	GAGGAG	3 cut(s)	803, 1662, 1925
BseSI	GKGCMC	1 cut(s)	1061
BseXI	GCAGC	9 cut(s)	100, 196, 208, 1126, 1360, 1382, 1723, 1816, 2227
BseYI	CCCAGC	1 cut(s)	1924
Bsh1236I	CGCG	2 cut(s)	54, 1521
BshFI	GGCC	7 cut(s)	31, 48, 260, 469, 1244, 1417, 1769
BshNI	GGYRCC	1 cut(s)	997
BshTI	ACCGGT	1 cut(s)	1996
BshVI	ATCGAT	1 cut(s)	1498
BsiHKCI	CYCGRG	2 cut(s)	224, 2012
BsiSI	CCGG	5 cut(s)	1395, 1414, 1457, 1937, 1997
BslFI	GGGAC	2 cut(s)	303, 2071
BslI	CCNNNNNNNGG	7 cut(s)	287, 520, 973, 1251, 1547, 1778, 2200
BsmAI	GTCTC	1 cut(s)	1590
BsmBI	CGTCTC	1 cut(s)	1590
BsmFI	GGGAC	2 cut(s)	303, 2071
BsmI	GAATGC	5 cut(s)	920, 939, 1363, 1440, 1467
BsnI	GGCC	7 cut(s)	31, 48, 260, 469, 1244, 1417, 1769
BsoBI	CYCGRG	2 cut(s)	224, 2012
Bsp1286I	GDGCHC	4 cut(s)	1061, 1394, 1661, 1982
Bsp13I	TCCGGA	1 cut(s)	1936
Bsp1407I	TGTACA	1 cut(s)	1012
Bsp143I	GATC	8 cut(s)	7, 184, 277, 377, 754, 1499, 1505, 1569
Bsp19I	CCATGG	1 cut(s)	530
BspACI	CCGC	7 cut(s)	5, 36, 126, 148, 521, 752, 1240
BspANI	GGCC	7 cut(s)	31, 48, 260, 469, 1244, 1417, 1769
BspCNI	CTCAG	5 cut(s)	334, 550, 778, 892, 1747
BspDI	ATCGAT	1 cut(s)	1498
BspEI	TCCGGA	1 cut(s)	1936
BspFNI	CGCG	2 cut(s)	54, 1521
BspLI	GGNNCC	6 cut(s)	9, 528, 717, 792, 999, 1770
BspMI	ACCTGC	2 cut(s)	400, 508
BspOI	GCTAGC	1 cut(s)	2280
BspPI	GGATC	4 cut(s)	2, 15, 272, 762
BspQI	GCTCTTC	3 cut(s)	538, 1839, 2243
BspT107I	GGYRCC	1 cut(s)	997
BspTI	CTTAAG	3 cut(s)	515, 938, 2195
BsrFI	RCCGGY	1 cut(s)	1996
BsrGI	TGTACA	1 cut(s)	1012
BsrI	ACTGG	4 cut(s)	142, 1256, 1636, 2065
BssAI	RCCGGY	1 cut(s)	1996
BssECI	CCNNGG	5 cut(s)	225, 530, 1202, 1393, 1439
BssHII	GCGCGC	1 cut(s)	52
BssMI	GATC	8 cut(s)	7, 184, 277, 377, 754, 1499, 1505, 1569
BssNAI	GTATAC	1 cut(s)	593
BssT1I	CCWWGG	1 cut(s)	530
Bst1107I	GTATAC	1 cut(s)	593
Bst2UI	CCWGG	9 cut(s)	33, 795, 842, 1335, 1419, 1431, 1440, 1467, 2282
Bst4CI	ACNGT	9 cut(s)	16, 362, 569, 583, 1206, 1584, 1729, 1816, 1849
Bst6I	CTCTTC	8 cut(s)	94, 127, 396, 538, 1062, 1263, 1839, 2243
BstAFI	CTTAAG	3 cut(s)	515, 938, 2195
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstAUI	TGTACA	1 cut(s)	1012
BstC8I	GCNNGC	4 cut(s)	50, 54, 1242, 2278
BstDEI	CTNAG	8 cut(s)	200, 321, 558, 786, 869, 900, 1321, 1755
BstDSI	CCRYGG	2 cut(s)	530, 1202
BstEII	GGTNACC	1 cut(s)	482
BstENI	CCTNNNNNAGG	1 cut(s)	2198
BstF5I	GGATG	3 cut(s)	685, 1933, 2095
BstFNI	CGCG	2 cut(s)	54, 1521
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	4 cut(s)	41, 54, 56, 1521
BstKTI	GATC	8 cut(s)	10, 187, 280, 380, 757, 1502, 1508, 1572
BstMAI	GTCTC	1 cut(s)	1590
BstMBI	GATC	8 cut(s)	7, 184, 277, 377, 754, 1499, 1505, 1569
BstNI	CCWGG	9 cut(s)	33, 795, 842, 1335, 1419, 1431, 1440, 1467, 2282
BstNSI	RCATGY	1 cut(s)	2218
BstPI	GGTNACC	1 cut(s)	482
BstSLI	GKGCMC	1 cut(s)	1061
BstUI	CGCG	2 cut(s)	54, 1521
BstV1I	GCAGC	9 cut(s)	100, 196, 208, 1126, 1360, 1382, 1723, 1816, 2227
BstV2I	GAAGAC	2 cut(s)	584, 1394
BstX2I	RGATCY	2 cut(s)	7, 754
BstYI	RGATCY	2 cut(s)	7, 754
BstZ17I	GTATAC	1 cut(s)	593
Bsu15I	ATCGAT	1 cut(s)	1498
Bsu36I	CCTNAGG	2 cut(s)	786, 869
BsuI	GTATCC	1 cut(s)	1861
BsuRI	GGCC	7 cut(s)	31, 48, 260, 469, 1244, 1417, 1769
BsuTUI	ATCGAT	1 cut(s)	1498
BtgI	CCRYGG	2 cut(s)	530, 1202
BtgZI	GCGATG	2 cut(s)	1536, 2244
BtrI	CACGTC	1 cut(s)	1553
BtsCI	GGATG	3 cut(s)	685, 1933, 2095
BtsI	GCAGTG	1 cut(s)	1621
BtsIMutI	CAGTG	3 cut(s)	588, 1621, 1879
BveI	ACCTGC	2 cut(s)	400, 508
Cac8I	GCNNGC	4 cut(s)	50, 54, 1242, 2278
CaiI	CAGNNNCTG	1 cut(s)	500
CfoI	GCGC	4 cut(s)	41, 54, 56, 1521
Cfr10I	RCCGGY	1 cut(s)	1996
Cfr13I	GGNCC	8 cut(s)	451, 497, 565, 1219, 1242, 1667, 1768, 1781
ClaI	ATCGAT	1 cut(s)	1498
CseI	GACGC	2 cut(s)	300, 1319
Csp6I	GTAC	3 cut(s)	1013, 1817, 2017
CspAI	ACCGGT	1 cut(s)	1996
CviAII	CATG	4 cut(s)	531, 1216, 1986, 2215
CviQI	GTAC	3 cut(s)	1013, 1817, 2017
DdeI	CTNAG	8 cut(s)	200, 321, 558, 786, 869, 900, 1321, 1755
DpnI	GATC	8 cut(s)	9, 186, 279, 379, 756, 1501, 1507, 1571
DpnII	GATC	8 cut(s)	7, 184, 277, 377, 754, 1499, 1505, 1569
DraI	TTTAAA	2 cut(s)	817, 984
DraIII	CACNNNGTG	1 cut(s)	1988
Eam1104I	CTCTTC	8 cut(s)	94, 127, 396, 538, 1062, 1263, 1839, 2243
EarI	CTCTTC	8 cut(s)	94, 127, 396, 538, 1062, 1263, 1839, 2243
EciI	GGCGGA	3 cut(s)	20, 115, 536
Eco130I	CCWWGG	1 cut(s)	530
Eco147I	AGGCCT	1 cut(s)	31
Eco24I	GRGCYC	3 cut(s)	1394, 1661, 1982
Eco47I	GGWCC	6 cut(s)	451, 497, 565, 1219, 1667, 1781
Eco57I	CTGAAG	3 cut(s)	75, 420, 1086
Eco81I	CCTNAGG	2 cut(s)	786, 869
Eco88I	CYCGRG	2 cut(s)	224, 2012
Eco91I	GGTNACC	1 cut(s)	482
EcoNI	CCTNNNNNAGG	1 cut(s)	2198
EcoO109I	RGGNCCY	1 cut(s)	497
EcoO65I	GGTNACC	1 cut(s)	482
EcoRII	CCWGG	9 cut(s)	31, 793, 840, 1333, 1417, 1429, 1438, 1465, 2280
EcoT14I	CCWWGG	1 cut(s)	530
EcoT38I	GRGCYC	3 cut(s)	1394, 1661, 1982
ErhI	CCWWGG	1 cut(s)	530
Esp3I	CGTCTC	1 cut(s)	1590
FaeI	CATG	4 cut(s)	534, 1219, 1989, 2218
FaqI	GGGAC	2 cut(s)	303, 2071
FatI	CATG	4 cut(s)	530, 1215, 1985, 2214
FauI	CCCGC	1 cut(s)	1233
FbaI	TGATCA	1 cut(s)	1569
FblI	GTMKAC	1 cut(s)	592
FokI	GGATG	3 cut(s)	692, 1920, 2102
FriOI	GRGCYC	3 cut(s)	1394, 1661, 1982
FspBI	CTAG	4 cut(s)	180, 953, 1503, 2277
GlaI	GCGC	4 cut(s)	40, 53, 55, 1520
GsaI	CCCAGC	1 cut(s)	1928
GsuI	CTGGAG	3 cut(s)	734, 1566, 1713
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	7 cut(s)	31, 48, 260, 469, 1244, 1417, 1769
HapII	CCGG	5 cut(s)	1395, 1414, 1457, 1937, 1997
HgaI	GACGC	2 cut(s)	300, 1319
HhaI	GCGC	4 cut(s)	41, 54, 56, 1521
Hin1II	CATG	4 cut(s)	534, 1219, 1989, 2218
Hin6I	GCGC	4 cut(s)	39, 52, 54, 1519
HinP1I	GCGC	4 cut(s)	39, 52, 54, 1519
HincII	GTYRAC	2 cut(s)	638, 1534
HindII	GTYRAC	2 cut(s)	638, 1534
HpaI	GTTAAC	1 cut(s)	1534
HpaII	CCGG	5 cut(s)	1395, 1414, 1457, 1937, 1997
HphI	GGTGA	3 cut(s)	152, 1285, 2144
Hpy166II	GTNNAC	4 cut(s)	593, 638, 1015, 1534
Hpy8I	GTNNAC	4 cut(s)	593, 638, 1015, 1534
Hpy99I	CGWCG	1 cut(s)	1892
HpyAV	CCTTC	9 cut(s)	139, 149, 556, 670, 848, 1165, 1753, 2179, 2194
HpyCH4III	ACNGT	9 cut(s)	16, 362, 569, 583, 1206, 1584, 1729, 1816, 1849
HpyCH4IV	ACGT	3 cut(s)	1055, 1552, 2034
HpyCH4V	TGCA	9 cut(s)	196, 464, 918, 1199, 1340, 1370, 1654, 1739, 1811
HpyF3I	CTNAG	8 cut(s)	200, 321, 558, 786, 869, 900, 1321, 1755
HpySE526I	ACGT	3 cut(s)	1055, 1552, 2034
Hsp92II	CATG	4 cut(s)	534, 1219, 1989, 2218
HspAI	GCGC	4 cut(s)	39, 52, 54, 1519
Kpn2I	TCCGGA	1 cut(s)	1936
Ksp22I	TGATCA	1 cut(s)	1569
KspAI	GTTAAC	1 cut(s)	1534
Kzo9I	GATC	8 cut(s)	7, 184, 277, 377, 754, 1499, 1505, 1569
LguI	GCTCTTC	3 cut(s)	538, 1839, 2243
LmnI	GCTCC	7 cut(s)	508, 715, 790, 901, 1030, 1443, 1912
Lsp1109I	GCAGC	9 cut(s)	100, 196, 208, 1126, 1360, 1382, 1723, 1816, 2227
LweI	GCATC	2 cut(s)	289, 1748
MaeI	CTAG	4 cut(s)	180, 953, 1503, 2277
MaeII	ACGT	3 cut(s)	1055, 1552, 2034
MaeIII	GTNAC	2 cut(s)	140, 482
MalI	GATC	8 cut(s)	9, 186, 279, 379, 756, 1501, 1507, 1571
MboI	GATC	8 cut(s)	7, 184, 277, 377, 754, 1499, 1505, 1569
MfeI	CAATTG	1 cut(s)	1483
MflI	RGATCY	2 cut(s)	7, 754
MhlI	GDGCHC	4 cut(s)	1061, 1394, 1661, 1982
MlyI	GAGTC	2 cut(s)	641, 831
MmeI	TCCRAC	2 cut(s)	35, 2067
MroI	TCCGGA	1 cut(s)	1936
MslI	CAYNNNNRTG	1 cut(s)	1900
MspA1I	CMGCKG	2 cut(s)	1373, 1736
MspCI	CTTAAG	3 cut(s)	515, 938, 2195
MspI	CCGG	5 cut(s)	1395, 1414, 1457, 1937, 1997
MunI	CAATTG	1 cut(s)	1483
Mva1269I	GAATGC	5 cut(s)	920, 939, 1363, 1440, 1467
MvaI	CCWGG	9 cut(s)	33, 795, 842, 1335, 1419, 1431, 1440, 1467, 2282
MvnI	CGCG	2 cut(s)	54, 1521
NciI	CCSGG	3 cut(s)	1395, 1414, 1458
NcoI	CCATGG	1 cut(s)	530
NdeII	GATC	8 cut(s)	7, 184, 277, 377, 754, 1499, 1505, 1569
NheI	GCTAGC	1 cut(s)	2276
NlaIII	CATG	4 cut(s)	534, 1219, 1989, 2218
NlaIV	GGNNCC	6 cut(s)	9, 528, 717, 792, 999, 1770
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	1 cut(s)	2218
PaeR7I	CTCGAG	1 cut(s)	2012
PauI	GCGCGC	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	31
PciI	ACATGT	1 cut(s)	2214
PciSI	GCTCTTC	3 cut(s)	538, 1839, 2243
PctI	GAATGC	5 cut(s)	920, 939, 1363, 1440, 1467
PfeI	GAWTC	9 cut(s)	63, 83, 654, 1143, 1255, 1475, 1623, 1804, 1882
PflMI	CCANNNNNTGG	1 cut(s)	1251
PinAI	ACCGGT	1 cut(s)	1996
PleI	GAGTC	2 cut(s)	641, 830
PpsI	GAGTC	2 cut(s)	641, 830
PpuMI	RGGWCCY	1 cut(s)	497
PscI	ACATGT	1 cut(s)	2214
Psp1406I	AACGTT	1 cut(s)	2034
Psp5II	RGGWCCY	1 cut(s)	497
Psp6I	CCWGG	9 cut(s)	31, 793, 840, 1333, 1417, 1429, 1438, 1465, 2280
PspEI	GGTNACC	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	1924
PspGI	CCWGG	9 cut(s)	31, 793, 840, 1333, 1417, 1429, 1438, 1465, 2280
PspN4I	GGNNCC	6 cut(s)	9, 528, 717, 792, 999, 1770
PspPI	GGNCC	8 cut(s)	451, 497, 565, 1219, 1242, 1667, 1768, 1781
PspPPI	RGGWCCY	1 cut(s)	497
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	7, 754
PteI	GCGCGC	1 cut(s)	52
PvuII	CAGCTG	2 cut(s)	1373, 1736
RsaI	GTAC	3 cut(s)	1014, 1818, 2018
RsaNI	GTAC	3 cut(s)	1013, 1817, 2017
RseI	CAYNNNNRTG	1 cut(s)	1900
SapI	GCTCTTC	3 cut(s)	538, 1839, 2243
Sau3AI	GATC	8 cut(s)	7, 184, 277, 377, 754, 1499, 1505, 1569
Sau96I	GGNCC	8 cut(s)	451, 497, 565, 1219, 1242, 1667, 1768, 1781
SchI	GAGTC	2 cut(s)	641, 831
SduI	GDGCHC	4 cut(s)	1061, 1394, 1661, 1982
SfaNI	GCATC	2 cut(s)	289, 1748
Sfr274I	CTCGAG	1 cut(s)	2012
SinI	GGWCC	6 cut(s)	451, 497, 565, 1219, 1667, 1781
SlaI	CTCGAG	1 cut(s)	2012
SmiMI	CAYNNNNRTG	1 cut(s)	1900
SmlI	CTYRAG	6 cut(s)	515, 629, 938, 1608, 2012, 2195
SmoI	CTYRAG	6 cut(s)	515, 629, 938, 1608, 2012, 2195
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	7 cut(s)	5, 36, 126, 148, 521, 752, 1240
SspI	AATATT	1 cut(s)	1868
SspMI	CTAG	4 cut(s)	180, 953, 1503, 2277
StuI	AGGCCT	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	9 cut(s)	16, 362, 569, 583, 1206, 1584, 1729, 1816, 1849
TaiI	ACGT	3 cut(s)	1058, 1555, 2037
TaqI	TCGA	9 cut(s)	81, 172, 376, 541, 1498, 1675, 1887, 2013, 2045
TatI	WGTACW	1 cut(s)	1012
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	9 cut(s)	63, 83, 654, 1143, 1255, 1475, 1623, 1804, 1882
TscAI	CASTG	3 cut(s)	588, 1621, 1879
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	9 cut(s)	113, 196, 209, 1114, 1370, 1373, 1736, 1829, 2240
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	4 cut(s)	1204, 1289, 2106, 2261
TspGWI	ACGGA	1 cut(s)	1211
TspRI	CASTG	3 cut(s)	588, 1621, 1879
Van91I	CCANNNNNTGG	1 cut(s)	1251
Vha464I	CTTAAG	3 cut(s)	515, 938, 2195
VpaK11BI	GGWCC	6 cut(s)	451, 497, 565, 1219, 1667, 1781
XagI	CCTNNNNNAGG	1 cut(s)	2198
XapI	RAATTY	5 cut(s)	474, 1296, 1598, 1822, 2292
XbaI	TCTAGA	1 cut(s)	1502
XceI	RCATGY	1 cut(s)	2218
XhoI	CTCGAG	1 cut(s)	2012
XmiI	GTMKAC	1 cut(s)	592
XspI	CTAG	4 cut(s)	180, 953, 1503, 2277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.