Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003545

Physical Location & Seq

Genomic Coordinates Forward (+)

43719825 .. 43723187

Gene Structure 3363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0287100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCGGAAGAATTGCTGCCACGTATGCTTAGCTTTCGTGCTCAAATTGCTCAACTTTCTTCAAGCTTTCGTCGGCGTCTCGATCATAGTCTACTCGGCGTGGATGCTTGATCAGTGGAACCATCATATTCCGGTGTTCCCACCGTCCTCCGCGCCTTCCCCGGACTCTCCTTTCTCACTTTCGTTGGGCTCCGACGCCGGCGCGGCTTCCGATCAGGTCACGCCGTTGGATTTTGCAGTCCGGTTGGTGTCTGGGTTCGATGACGGCATGGGGTTTCAATTGAATGCACTGAAGCTCCCTGCTCCTTGGTTCATCTACTCTTTTATGGGAGTGGGGGCTTTGCTCTGTTGCATTACTTTCATAGGTTGTATCGCAGCCGAATCAATCAACGGCTGCTGCCTGTGTTTCTACAGTCTGCTCACAACGGTACTAACTCTAGTGGAAGCAGCTCTGGTTGCGTTCATAGAAATTGATCACCATTGGGACAAGGATCTTCCACTTGACCCAACTGGTGAACTTGAGAGTCTTCGATCTTTTATAGAAGAGAACATTGACATCTGTAAGTGGGTTGGGATAGCTGTTGTTGGAATACAGGCTTTATCTCTGCTACTAGCAATAATTCTACGAGGCATGATATCTACTCATAAACCTGACTATGATGTTGAAGATGAGTACGATGCTAGGGGTAGAACTTGGGAACCACTGCTAAATCAACAGTCAAGCCAAGCATCTGGATCAACCAAGGGTGATGGCAGAGGGACTCACTCTGACATTTGGAGCTCACGAATAAGAGATAAGTATGGATTGAGCTCTGGTGATAAATACAATTCTGTAAATCAGAATGCATCAATGAGTATGAAATCCAGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

290

Amino Acids

31.81

Weight (kDa)

5.06

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57870 AT5G57870
fragaria_vesca	FvH4_1g00720 FvH4_1g00720 FvH4_2g41200
malus_domestica	MD02G1005900.v1.1 MD02G1006000.v1.1 MD08G1055400.v1.1 MD15G1150600.v1.1
prunus_persica	Prupe.1G395100_v2.0.a1 Prupe.7G265100_v2.0.a1
pyrus_communis	pycom02g00490 pycom08g04550 pycom14g07580 pycom15g13480
rosa_chinensis	RchiOBHm_Chr2g0085441 RchiOBHm_Chr6g0299311
rosa_laevigata	RLG00000011443 RLG00000015688
rosa_multiflora	Rmu_sc0007908.1_g000012 Rmu_ssc0000374.1_g000005
rosa_roxburghii	Rroxscaffold_2G00155380 Rroxscaffold_7G00168790
rosa_rugosa	Rorug01G0460400 Rorug06G0287100
rosa_samantha	Rh2AG008600 Rh2BG009900 Rh2CG010400 Rh2DG010800 Rh6AG398600 Rh6BG407000 Rh6CG413000 Rh6DG399800
rosa_wichuraiana	Rw2G000830 Rw6G034890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	2 cut(s)	152, 203
AciI	CCGC	3 cut(s)	4, 150, 203
AclWI	GGATC	2 cut(s)	498, 742
AcuI	CTGAAG	1 cut(s)	311
AcyI	GRCGYC	2 cut(s)	75, 195
AfaI	GTAC	2 cut(s)	429, 674
AgsI	TTSAA	4 cut(s)	62, 278, 283, 665
AjnI	CCWGG	1 cut(s)	863
AluBI	AGCT	7 cut(s)	32, 65, 295, 449, 578, 780, 810
AluI	AGCT	7 cut(s)	32, 65, 295, 449, 578, 780, 810
Alw21I	GWGCWC	3 cut(s)	42, 782, 812
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	2 cut(s)	498, 742
ApeKI	GCWGC	5 cut(s)	15, 374, 393, 396, 446
AspLEI	GCGC	2 cut(s)	154, 203
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	4 cut(s)	467, 524, 758, 827
BanII	GRGCYC	3 cut(s)	191, 782, 812
BbsI	GAAGAC	1 cut(s)	518
Bbv12I	GWGCWC	3 cut(s)	42, 782, 812
BbvI	GCAGC	5 cut(s)	2, 380, 383, 386, 458
BccI	CCATC	2 cut(s)	129, 743
BceAI	ACGGC	3 cut(s)	208, 280, 406
BciT130I	CCWGG	1 cut(s)	865
BclI	TGATCA	2 cut(s)	109, 472
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	3 cut(s)	437, 611, 681
BfmI	CTRYAG	1 cut(s)	409
BglI	GCCNNNNNGGC	1 cut(s)	203
BisI	GCNGC	6 cut(s)	16, 204, 375, 394, 397, 447
BlpI	GCTNAGC	1 cut(s)	28
BlsI	GCNGC	6 cut(s)	17, 205, 376, 395, 398, 448
Bme1390I	CCNGG	2 cut(s)	161, 865
BmiI	GGNNCC	3 cut(s)	119, 190, 699
BmrFI	CCNGG	2 cut(s)	161, 865
BmsI	GCATC	4 cut(s)	93, 667, 737, 854
BpiI	GAAGAC	1 cut(s)	518
Bpu1102I	GCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	22
BsaHI	GRCGYC	2 cut(s)	75, 195
BsaJI	CCNNGG	3 cut(s)	159, 305, 741
BsaWI	WCCGGW	2 cut(s)	130, 240
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	865
BseDI	CCNNGG	3 cut(s)	159, 305, 741
BseGI	GGATG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	514
BseXI	GCAGC	5 cut(s)	2, 380, 383, 386, 458
Bsh1236I	CGCG	2 cut(s)	152, 203
BsiHKAI	GWGCWC	3 cut(s)	42, 782, 812
BsiSI	CCGG	4 cut(s)	131, 161, 198, 241
BslFI	GGGAC	2 cut(s)	497, 772
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	2 cut(s)	497, 772
BsmI	GAATGC	2 cut(s)	289, 847
Bsp1286I	GDGCHC	4 cut(s)	42, 191, 782, 812
Bsp143I	GATC	7 cut(s)	81, 109, 211, 472, 490, 530, 734
Bsp1720I	GCTNAGC	1 cut(s)	28
BspACI	CCGC	3 cut(s)	4, 150, 203
BspFNI	CGCG	2 cut(s)	152, 203
BspLI	GGNNCC	3 cut(s)	119, 190, 699
BspPI	GGATC	2 cut(s)	498, 742
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	3 cut(s)	159, 305, 741
BssMI	GATC	7 cut(s)	81, 109, 211, 472, 490, 530, 734
BssNI	GRCGYC	2 cut(s)	75, 195
BssT1I	CCWWGG	2 cut(s)	305, 741
Bst2UI	CCWGG	1 cut(s)	865
Bst4CI	ACNGT	4 cut(s)	144, 413, 427, 717
Bst6I	CTCTTC	1 cut(s)	537
BstACI	GRCGYC	2 cut(s)	75, 195
BstBAI	YACGTR	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	2 cut(s)	152, 203
BstHHI	GCGC	2 cut(s)	154, 203
BstKTI	GATC	7 cut(s)	84, 112, 214, 475, 493, 533, 737
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	7 cut(s)	81, 109, 211, 472, 490, 530, 734
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 46, 203, 455
BstNI	CCWGG	1 cut(s)	865
BstSCI	CCNGG	2 cut(s)	159, 863
BstSFI	CTRYAG	1 cut(s)	409
BstUI	CGCG	2 cut(s)	152, 203
BstV1I	GCAGC	5 cut(s)	2, 380, 383, 386, 458
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	1 cut(s)	490
BstXI	CCANNNNNNTGG	1 cut(s)	731
BstYI	RGATCY	1 cut(s)	490
BtsCI	GGATG	1 cut(s)	108
BtsI	GCAGTG	1 cut(s)	701
BtsIMutI	CAGTG	3 cut(s)	119, 287, 701
Cac8I	GCNNGC	1 cut(s)	199
CfoI	GCGC	2 cut(s)	154, 203
Cfr10I	RCCGGY	1 cut(s)	197
CseI	GACGC	2 cut(s)	64, 203
Csp6I	GTAC	2 cut(s)	428, 673
CviAII	CATG	2 cut(s)	268, 631
CviQI	GTAC	2 cut(s)	428, 673
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	7 cut(s)	83, 111, 213, 474, 492, 532, 736
DpnII	GATC	7 cut(s)	81, 109, 211, 472, 490, 530, 734
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Ecl136II	GAGCTC	2 cut(s)	780, 810
Eco130I	CCWWGG	2 cut(s)	305, 741
Eco24I	GRGCYC	3 cut(s)	191, 782, 812
Eco32I	GATATC	1 cut(s)	636
Eco53kI	GAGCTC	2 cut(s)	780, 810
Eco57I	CTGAAG	1 cut(s)	311
EcoICRI	GAGCTC	2 cut(s)	780, 810
EcoRII	CCWGG	1 cut(s)	863
EcoRV	GATATC	1 cut(s)	636
EcoT14I	CCWWGG	2 cut(s)	305, 741
EcoT22I	ATGCAT	1 cut(s)	847
EcoT38I	GRGCYC	3 cut(s)	191, 782, 812
ErhI	CCWWGG	2 cut(s)	305, 741
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	2 cut(s)	271, 634
FaqI	GGGAC	2 cut(s)	497, 772
FatI	CATG	2 cut(s)	267, 630
FbaI	TGATCA	2 cut(s)	109, 472
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	6 cut(s)	16, 204, 375, 394, 397, 447
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	3 cut(s)	191, 782, 812
Fsp4HI	GCNGC	6 cut(s)	16, 204, 375, 394, 397, 447
FspBI	CTAG	3 cut(s)	437, 611, 681
GlaI	GCGC	2 cut(s)	153, 202
GluI	GCNGC	6 cut(s)	16, 204, 375, 394, 397, 447
HapII	CCGG	4 cut(s)	131, 161, 198, 241
HgaI	GACGC	2 cut(s)	64, 203
HhaI	GCGC	2 cut(s)	154, 203
Hin1I	GRCGYC	2 cut(s)	75, 195
Hin1II	CATG	2 cut(s)	271, 634
Hin6I	GCGC	2 cut(s)	152, 201
HinP1I	GCGC	2 cut(s)	152, 201
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	4 cut(s)	164, 380, 523, 760
HpaII	CCGG	4 cut(s)	131, 161, 198, 241
HphI	GGTGA	4 cut(s)	467, 524, 758, 827
Hpy166II	GTNNAC	2 cut(s)	91, 515
Hpy188I	TCNGA	4 cut(s)	193, 211, 769, 840
Hpy188III	TCNNGA	3 cut(s)	79, 732, 783
Hpy8I	GTNNAC	2 cut(s)	91, 515
Hpy99I	CGWCG	2 cut(s)	74, 197
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	4 cut(s)	144, 413, 427, 717
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	236, 287, 351, 845
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 46, 203, 455
HpyF3I	CTNAG	1 cut(s)	28
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	2 cut(s)	75, 195
Hsp92II	CATG	2 cut(s)	271, 634
HspAI	GCGC	2 cut(s)	152, 201
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Ksp22I	TGATCA	2 cut(s)	109, 472
Kzo9I	GATC	7 cut(s)	81, 109, 211, 472, 490, 530, 734
LmnI	GCTCC	4 cut(s)	194, 300, 307, 777
Lsp1109I	GCAGC	5 cut(s)	2, 380, 383, 386, 458
LweI	GCATC	4 cut(s)	93, 667, 737, 854
MaeI	CTAG	3 cut(s)	437, 611, 681
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	7 cut(s)	83, 111, 213, 474, 492, 532, 736
MboI	GATC	7 cut(s)	81, 109, 211, 472, 490, 530, 734
MboII	GAAGA	6 cut(s)	19, 50, 485, 518, 554, 677
MfeI	CAATTG	1 cut(s)	278
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	4 cut(s)	42, 191, 782, 812
MluCI	AATT	6 cut(s)	10, 44, 278, 468, 618, 826
MlyI	GAGTC	3 cut(s)	158, 532, 754
MmeI	TCCRAC	3 cut(s)	207, 216, 565
MnlI	CCTC	3 cut(s)	157, 620, 749
Mph1103I	ATGCAT	1 cut(s)	847
MreI	CGCCGGCG	1 cut(s)	197
MroNI	GCCGGC	1 cut(s)	197
MspI	CCGG	4 cut(s)	131, 161, 198, 241
MspR9I	CCNGG	2 cut(s)	161, 865
MunI	CAATTG	1 cut(s)	278
Mva1269I	GAATGC	2 cut(s)	289, 847
MvaI	CCWGG	1 cut(s)	865
MvnI	CGCG	2 cut(s)	152, 203
MwoI	GCNNNNNNNGC	4 cut(s)	24, 46, 203, 455
NaeI	GCCGGC	1 cut(s)	199
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	7 cut(s)	81, 109, 211, 472, 490, 530, 734
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	271, 634
NlaIV	GGNNCC	3 cut(s)	119, 190, 699
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	847
PctI	GAATGC	2 cut(s)	289, 847
PdiI	GCCGGC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	380
PkrI	GCNGC	6 cut(s)	17, 205, 376, 395, 398, 448
PleI	GAGTC	3 cut(s)	158, 531, 754
PpsI	GAGTC	3 cut(s)	158, 531, 754
Ppu21I	YACGTR	1 cut(s)	22
Psp124BI	GAGCTC	2 cut(s)	782, 812
Psp6I	CCWGG	1 cut(s)	863
PspGI	CCWGG	1 cut(s)	863
PspN4I	GGNNCC	3 cut(s)	119, 190, 699
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	2 cut(s)	429, 674
RsaNI	GTAC	2 cut(s)	428, 673
SacI	GAGCTC	2 cut(s)	782, 812
SatI	GCNGC	6 cut(s)	16, 204, 375, 394, 397, 447
Sau3AI	GATC	7 cut(s)	81, 109, 211, 472, 490, 530, 734
SchI	GAGTC	3 cut(s)	158, 532, 754
ScrFI	CCNGG	2 cut(s)	161, 865
SduI	GDGCHC	4 cut(s)	42, 191, 782, 812
SfaNI	GCATC	4 cut(s)	93, 667, 737, 854
SfcI	CTRYAG	1 cut(s)	409
SgrAI	CRCCGGYG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	6 cut(s)	10, 44, 278, 468, 618, 826
SsiI	CCGC	3 cut(s)	4, 150, 203
SspMI	CTAG	3 cut(s)	437, 611, 681
SstI	GAGCTC	2 cut(s)	782, 812
StyD4I	CCNGG	2 cut(s)	159, 863
StyI	CCWWGG	2 cut(s)	305, 741
TaaI	ACNGT	4 cut(s)	144, 413, 427, 717
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	3 cut(s)	80, 258, 529
TasI	AATT	6 cut(s)	10, 44, 278, 468, 618, 826
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	380
TscAI	CASTG	3 cut(s)	119, 294, 708
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	5 cut(s)	15, 374, 393, 396, 446
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	4 cut(s)	301, 349, 451, 872
TspRI	CASTG	3 cut(s)	119, 294, 708
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	3 cut(s)	437, 611, 681
Zsp2I	ATGCAT	1 cut(s)	847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.