Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003545

Physical Location & Seq

Genomic Coordinates Reverse (-)

55397282 .. 55400150

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0460400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGATATTGAAGCAAAAGGTATTGATCAGAAGGAAAAAGATCTGAATGACTGGCTTCCCATCACAAGTTCTAGGACTGCAACCTGGTGGTACTCTGCTTTCCACAATGTCACCGCCATGGTTGGTGCTGGTGTGCTTGGTCTTCCTTTTGCCATGTCTCAACTTGGATGGGGACCTGGAGTCACTGTGATTGTTCTTTCATGGATTATCACGCTATACACCTTATGGCAGATGGTAGAGATGCATGAGTCCGTGCCGGGGAAGAGGTTTGATAGGTACCATGAGTTGGGTCAACATGCCTTCGGAGAAAAGCTAGGGCTTTGGATTGTGGTACCCCAACAACTAATGGTGCAATCTGGTACGTGCATCGTCTATATGATTACAGGTGGTAAATCACTGCAGAAGATCCACGATACTGTGTCCCCTGGAAAACCAATCAAAACCACCTACTTCATCATGATCTTCGCCGCTGTCCACTTTGTTATCTCTCACCTCCCTAGCTTCAATTCCATTGCTGGTATTTCTCTTGCTGCAGCTGTCATGTCCTTGAGCTACTCTACAGTTGCTTGGGGAGCTTCACTTCACAAAGGGGTTCAACCAGAAGTGCAGTATGGCCCCAGGGCTTCAACCACCACAGGAAATGTGTTCAACTTCTTTAGTGCTTTGGGAGATGTAGCTTTTTCTTTTGCTGGTCACAATGTGGTTTTGGAGATTCAAGCAACACTTCCTTCTACACCTGACAAGCCTTCCAAAAAACCAATGTGGAAGGGTGTGATGCTTGCATATGTTGTGGTGGCTTTGTGCTATTTCCCAGTTGCTCTTATCGGTTATTGGGTGTTCGGAAACAGTATTCAGGATAACATCCTCATATCATTGGAGAAACCTAAGTGGCTTATTGTTATTGCTAATGCCTTTGTTGTTATTCATGTCATTGGAAGTTATCAGGTCTATGCAATGCCGGTGTTTGACACAATTGAAGCAGCTCTAGTGAAACAGATGAATTTCAAACCTTCTTATTCTCTTCGCTTTATATCACGAAATCTATTTGTTGCAATGACCTTGTTCATCGGAGTCACGTTCCCTTTCTTTGGCGGGCTTCTCAGTTTCTTTGGAGGATTTGCTTTTGCTCCCACAACATATTTTCTTCCTTGCATCATGTGGCTCGTCATCTACAAACCTAAGAAGTTCAGCTTATCCTGGTTTGCAAATTGGTTCTGCATTATAGCTGGAGTGTTATTGCTGATTTTTGCTCCTATTGGTGCATTGAGGAATATCATACTTCAAGCCAAGGATTTCAAATTCTACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

436

Amino Acids

48.49

Weight (kDa)

9.22

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	25 - 421	2.8e-107	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	37 - 162	1.7e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57870 AT5G57870
fragaria_vesca	FvH4_1g00720 FvH4_1g00720 FvH4_2g41200
malus_domestica	MD02G1005900.v1.1 MD02G1006000.v1.1 MD08G1055400.v1.1 MD15G1150600.v1.1
prunus_persica	Prupe.1G395100_v2.0.a1 Prupe.7G265100_v2.0.a1
pyrus_communis	pycom02g00490 pycom08g04550 pycom14g07580 pycom15g13480
rosa_chinensis	RchiOBHm_Chr2g0085441 RchiOBHm_Chr6g0299311
rosa_laevigata	RLG00000011443 RLG00000015688
rosa_multiflora	Rmu_sc0007908.1_g000012 Rmu_ssc0000374.1_g000005
rosa_roxburghii	Rroxscaffold_2G00155380 Rroxscaffold_7G00168790
rosa_rugosa	Rorug01G0460400 Rorug06G0287100
rosa_samantha	Rh2AG008600 Rh2BG009900 Rh2CG010400 Rh2DG010800 Rh6AG398600 Rh6BG407000 Rh6CG413000 Rh6DG399800
rosa_wichuraiana	Rw2G000830 Rw6G034890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	276, 331
AccB1I	GGYRCC	2 cut(s)	276, 331
AccB7I	CCANNNNNTGG	1 cut(s)	286
AciI	CCGC	3 cut(s)	114, 468, 1092
AclWI	GGATC	1 cut(s)	400
AcsI	RAATTY	2 cut(s)	1000, 1298
AdeI	CACNNNGTG	1 cut(s)	700
AfaI	GTAC	4 cut(s)	92, 278, 333, 361
AfiI	CCNNNNNNNGG	3 cut(s)	258, 286, 1088
AhdI	GACNNNNNGTC	1 cut(s)	179
AjnI	CCWGG	5 cut(s)	83, 175, 424, 617, 1196
AluBI	AGCT	9 cut(s)	313, 501, 536, 552, 575, 677, 983, 1191, 1226
AluI	AGCT	9 cut(s)	313, 501, 536, 552, 575, 677, 983, 1191, 1226
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	400
AoxI	GGCC	1 cut(s)	613
ApeKI	GCWGC	3 cut(s)	530, 533, 980
ApoI	RAATTY	2 cut(s)	1000, 1298
Asp718I	GGTACC	2 cut(s)	276, 331
AspS9I	GGNCC	2 cut(s)	173, 614
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	103, 482
AvaII	GGWCC	1 cut(s)	173
BanI	GGYRCC	2 cut(s)	276, 331
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	517, 545, 992
BccI	CCATC	3 cut(s)	68, 162, 226
BciT130I	CCWGG	5 cut(s)	85, 177, 426, 619, 1198
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	4 cut(s)	72, 314, 498, 986
BfmI	CTRYAG	3 cut(s)	398, 531, 558
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	4 cut(s)	468, 531, 534, 981
BlsI	GCNGC	4 cut(s)	469, 532, 535, 982
Bme1390I	CCNGG	6 cut(s)	85, 177, 258, 426, 619, 1198
Bme18I	GGWCC	1 cut(s)	173
BmeRI	GACNNNNNGTC	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	173, 614
BmiI	GGNNCC	4 cut(s)	174, 278, 333, 616
BmrFI	CCNGG	6 cut(s)	85, 177, 258, 426, 619, 1198
BmrI	ACTGGG	1 cut(s)	806
BmsI	GCATC	4 cut(s)	231, 375, 765, 1161
BmuI	ACTGGG	1 cut(s)	806
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	2 cut(s)	198, 1248
BpuEI	CTTGAG	1 cut(s)	568
BpuMI	CCSGG	1 cut(s)	258
BsaAI	YACGTR	1 cut(s)	363
BsaJI	CCNNGG	6 cut(s)	117, 257, 424, 617, 618, 1287
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 286, 1088
Bse118I	RCCGGY	1 cut(s)	958
Bse1I	ACTGG	2 cut(s)	56, 812
Bse3DI	GCAATG	3 cut(s)	510, 960, 1059
BseBI	CCWGG	5 cut(s)	85, 177, 426, 619, 1198
BseDI	CCNNGG	6 cut(s)	117, 257, 424, 617, 618, 1287
BseGI	GGATG	2 cut(s)	173, 861
BseLI	CCNNNNNNNGG	3 cut(s)	258, 286, 1088
BseMI	GCAATG	3 cut(s)	510, 960, 1059
BseMII	CTCAG	1 cut(s)	1114
BseNI	ACTGG	2 cut(s)	56, 812
BseXI	GCAGC	3 cut(s)	517, 545, 992
BsgI	GTGCAG	1 cut(s)	626
BshFI	GGCC	1 cut(s)	615
BshNI	GGYRCC	2 cut(s)	276, 331
BsiSI	CCGG	2 cut(s)	257, 959
BslFI	GGGAC	2 cut(s)	186, 406
BslI	CCNNNNNNNGG	3 cut(s)	258, 286, 1088
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	2 cut(s)	186, 406
BsnI	GGCC	1 cut(s)	615
Bsp143I	GATC	4 cut(s)	25, 40, 405, 459
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	3 cut(s)	114, 468, 1092
BspANI	GGCC	1 cut(s)	615
BspCNI	CTCAG	1 cut(s)	1113
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	4 cut(s)	174, 278, 333, 616
BspMAI	CTGCAG	2 cut(s)	402, 535
BspPI	GGATC	1 cut(s)	400
BspT107I	GGYRCC	2 cut(s)	276, 331
BsrDI	GCAATG	3 cut(s)	510, 960, 1059
BsrFI	RCCGGY	1 cut(s)	958
BsrI	ACTGG	2 cut(s)	56, 812
BssAI	RCCGGY	1 cut(s)	958
BssECI	CCNNGG	6 cut(s)	117, 257, 424, 617, 618, 1287
BssMI	GATC	4 cut(s)	25, 40, 405, 459
BssT1I	CCWWGG	2 cut(s)	117, 1287
Bst2UI	CCWGG	5 cut(s)	85, 177, 426, 619, 1198
Bst4CI	ACNGT	4 cut(s)	187, 418, 562, 848
Bst6I	CTCTTC	2 cut(s)	257, 1026
BstBAI	YACGTR	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	780, 1094
BstDEI	CTNAG	4 cut(s)	885, 1100, 1179, 1308
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	173, 861
BstKTI	GATC	4 cut(s)	28, 43, 408, 462
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	4 cut(s)	25, 40, 405, 459
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNI	CCWGG	5 cut(s)	85, 177, 426, 619, 1198
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	6 cut(s)	83, 175, 256, 424, 617, 1196
BstSFI	CTRYAG	3 cut(s)	398, 531, 558
BstV1I	GCAGC	3 cut(s)	517, 545, 992
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	40, 405
BstYI	RGATCY	2 cut(s)	40, 405
BsuRI	GGCC	1 cut(s)	615
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	173, 861
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	183, 395
Cac8I	GCNNGC	2 cut(s)	780, 1094
CciI	TCATGA	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	958
Cfr13I	GGNCC	2 cut(s)	173, 614
CsiI	ACCWGGT	1 cut(s)	83
Csp6I	GTAC	4 cut(s)	91, 277, 332, 360
CviQI	GTAC	4 cut(s)	91, 277, 332, 360
DdeI	CTNAG	4 cut(s)	885, 1100, 1179, 1308
DpnI	GATC	4 cut(s)	27, 42, 407, 461
DpnII	GATC	4 cut(s)	25, 40, 405, 459
DraIII	CACNNNGTG	1 cut(s)	700
DriI	GACNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	2 cut(s)	257, 1026
Eam1105I	GACNNNNNGTC	1 cut(s)	179
EarI	CTCTTC	2 cut(s)	257, 1026
Eco130I	CCWWGG	2 cut(s)	117, 1287
Eco47I	GGWCC	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	5 cut(s)	83, 175, 424, 617, 1196
EcoT14I	CCWWGG	2 cut(s)	117, 1287
EcoT22I	ATGCAT	1 cut(s)	246
ErhI	CCWWGG	2 cut(s)	117, 1287
FalI	AAGNNNNNCTT	4 cut(s)	708, 740, 1175, 1207
FaqI	GGGAC	2 cut(s)	186, 406
FauI	CCCGC	1 cut(s)	1085
FauNDI	CATATG	1 cut(s)	784
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	468, 531, 534, 981
FokI	GGATG	2 cut(s)	180, 848
Fsp4HI	GCNGC	4 cut(s)	468, 531, 534, 981
FspBI	CTAG	4 cut(s)	72, 314, 498, 986
GluI	GCNGC	4 cut(s)	468, 531, 534, 981
GsuI	CTGGAG	2 cut(s)	198, 1248
HaeIII	GGCC	1 cut(s)	615
HapII	CCGG	2 cut(s)	257, 959
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HinfI	GANTC	4 cut(s)	180, 248, 712, 1071
HpaII	CCGG	2 cut(s)	257, 959
HphI	GGTGA	2 cut(s)	103, 482
Hpy166II	GTNNAC	2 cut(s)	293, 475
Hpy188I	TCNGA	5 cut(s)	30, 45, 305, 842, 1070
Hpy188III	TCNNGA	3 cut(s)	457, 854, 1035
Hpy8I	GTNNAC	2 cut(s)	293, 475
HpyAV	CCTTC	6 cut(s)	25, 310, 738, 756, 760, 1020
HpyCH4III	ACNGT	4 cut(s)	187, 418, 562, 848
HpyCH4IV	ACGT	2 cut(s)	362, 1076
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	4 cut(s)	885, 1100, 1179, 1308
HpySE526I	ACGT	2 cut(s)	362, 1076
KpnI	GGTACC	2 cut(s)	280, 335
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	25, 40, 405, 459
LmnI	GCTCC	3 cut(s)	572, 1132, 1255
Lsp1109I	GCAGC	3 cut(s)	517, 545, 992
LweI	GCATC	4 cut(s)	231, 375, 765, 1161
MabI	ACCWGGT	1 cut(s)	83
MaeI	CTAG	4 cut(s)	72, 314, 498, 986
MaeII	ACGT	2 cut(s)	362, 1076
MaeIII	GTNAC	4 cut(s)	109, 181, 692, 1072
MalI	GATC	4 cut(s)	27, 42, 407, 461
MboI	GATC	4 cut(s)	25, 40, 405, 459
MboII	GAAGA	6 cut(s)	134, 274, 415, 454, 1013, 1136
MfeI	CAATTG	1 cut(s)	972
MflI	RGATCY	2 cut(s)	40, 405
MluCI	AATT	5 cut(s)	505, 972, 1000, 1207, 1298
MlyI	GAGTC	3 cut(s)	189, 257, 1080
MnlI	CCTC	5 cut(s)	258, 503, 875, 1106, 1260
Mph1103I	ATGCAT	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	2 cut(s)	470, 536
MspI	CCGG	2 cut(s)	257, 959
MspR9I	CCNGG	6 cut(s)	85, 177, 258, 426, 619, 1198
MunI	CAATTG	1 cut(s)	972
MvaI	CCWGG	5 cut(s)	85, 177, 426, 619, 1198
MwoI	GCNNNNNNNGC	1 cut(s)	572
NciI	CCSGG	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	117
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	4 cut(s)	25, 40, 405, 459
NlaIV	GGNNCC	4 cut(s)	174, 278, 333, 616
NmuCI	GTSAC	4 cut(s)	109, 181, 692, 1072
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	1 cut(s)	299
PagI	TCATGA	1 cut(s)	456
PasI	CCCWGGG	1 cut(s)	618
PfeI	GAWTC	1 cut(s)	712
PflMI	CCANNNNNTGG	1 cut(s)	286
PkrI	GCNGC	4 cut(s)	469, 532, 535, 982
PleI	GAGTC	3 cut(s)	188, 256, 1079
PpsI	GAGTC	3 cut(s)	188, 256, 1079
Ppu21I	YACGTR	1 cut(s)	363
PpuMI	RGGWCCY	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	5 cut(s)	83, 175, 424, 617, 1196
PspGI	CCWGG	5 cut(s)	83, 175, 424, 617, 1196
PspN4I	GGNNCC	4 cut(s)	174, 278, 333, 616
PspPI	GGNCC	2 cut(s)	173, 614
PspPPI	RGGWCCY	1 cut(s)	173
PstI	CTGCAG	2 cut(s)	402, 535
PsuI	RGATCY	2 cut(s)	40, 405
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	4 cut(s)	92, 278, 333, 361
RsaNI	GTAC	4 cut(s)	91, 277, 332, 360
RseI	CAYNNNNRTG	1 cut(s)	116
SatI	GCNGC	4 cut(s)	468, 531, 534, 981
Sau3AI	GATC	4 cut(s)	25, 40, 405, 459
Sau96I	GGNCC	2 cut(s)	173, 614
SchI	GAGTC	3 cut(s)	189, 257, 1080
ScrFI	CCNGG	6 cut(s)	85, 177, 258, 426, 619, 1198
SexAI	ACCWGGT	1 cut(s)	83
SfaNI	GCATC	4 cut(s)	231, 375, 765, 1161
SfcI	CTRYAG	3 cut(s)	398, 531, 558
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
Sse9I	AATT	5 cut(s)	505, 972, 1000, 1207, 1298
SsiI	CCGC	3 cut(s)	114, 468, 1092
SspMI	CTAG	4 cut(s)	72, 314, 498, 986
StyD4I	CCNGG	6 cut(s)	83, 175, 256, 424, 617, 1196
StyI	CCWWGG	2 cut(s)	117, 1287
TaaI	ACNGT	4 cut(s)	187, 418, 562, 848
TaiI	ACGT	2 cut(s)	365, 1079
TasI	AATT	5 cut(s)	505, 972, 1000, 1207, 1298
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	1 cut(s)	712
TscAI	CASTG	2 cut(s)	190, 402
TseFI	GTSAC	4 cut(s)	109, 181, 692, 1072
TseI	GCWGC	3 cut(s)	530, 533, 980
Tsp45I	GTSAC	4 cut(s)	109, 181, 692, 1072
TspDTI	ATGAA	5 cut(s)	189, 442, 914, 1013, 1054
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	2 cut(s)	190, 402
Van91I	CCANNNNNTGG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	2 cut(s)	1000, 1298
XceI	RCATGY	1 cut(s)	299
XspI	CTAG	4 cut(s)	72, 314, 498, 986
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.