Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015772

Physical Location & Seq

Genomic Coordinates Reverse (-)

12239516 .. 12240730

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011729

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGACAAGACTTGGAGATATTTTCGTGTGTATGGGGAGCCACCCGTATATGAAGTGGACATGTGCAAGTATGTCTCCCCTAAGACCAAGCTGCTGGAGTGGTACATAGTTTGTGAAAATGAGATGAGGGTATTCAGTGCAGAAGAGTTAAAGAAGTATGATCAAACCTCTTTCATGAACTGGTGGATTGATGATGTAGAAGAAGGGTCCATTAGTGAAGATGAGGATGATGAAGGGCCTCCAGTTGTGGACCTGTCAGATGATGAAGGGCCAGTCGAAGAGCACATTGTAGAGGACAATGATGTTCCAGGTAAGGATGATGGCCCAATGTTTGATGATGGGCTAGGGAATGTGGATGAACCAGGTAAGGATGATGGGCCAAACAACCATAATGGCCCAAGGTCTGATGATGGGCTAGGGAATGTTGATGGGCCAGGCTTTGAGAGCCAATCAAGGAAAAAAAGAACTTTAGACAATGGAAAACAGAAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

165

Amino Acids

18.66

Weight (kDa)

4.18

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015772)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011729 RLG00000014626 RLG00000021567 RLG00000030167 RLG00000036677
rosa_roxburghii	Rroxscaffold_1G00004760 Rroxscaffold_2G00085340 Rroxscaffold_7G00171820 Rroxscaffold_7G00178220 Rroxscaffold_7G00178230
rosa_samantha	Rh2AG422800 Rh5DG541800 Rh6AG097700 Rh6BG378200 Rh6CG056100 Rh6CG383800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	60
AjnI	CCWGG	3 cut(s)	307, 361, 433
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	79
AoxI	GGCC	6 cut(s)	236, 269, 322, 377, 394, 431
ApeKI	GCWGC	1 cut(s)	91
AspS9I	GGNCC	8 cut(s)	207, 236, 250, 269, 323, 377, 395, 431
AvaII	GGWCC	2 cut(s)	207, 250
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	5 cut(s)	314, 332, 368, 404, 422
BciT130I	CCWGG	3 cut(s)	309, 363, 435
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	2 cut(s)	344, 416
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	3 cut(s)	309, 363, 435
Bme18I	GGWCC	2 cut(s)	207, 250
BmgT120I	GGNCC	8 cut(s)	207, 236, 250, 269, 323, 377, 395, 431
BmiI	GGNNCC	2 cut(s)	39, 208
BmrFI	CCNGG	3 cut(s)	309, 363, 435
BpmI	CTGGAG	2 cut(s)	116, 225
BsaJI	CCNNGG	1 cut(s)	398
Bse1I	ACTGG	3 cut(s)	185, 242, 272
BseBI	CCWGG	3 cut(s)	309, 363, 435
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	4 cut(s)	232, 322, 361, 376
BseNI	ACTGG	3 cut(s)	185, 242, 272
BseXI	GCAGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	6 cut(s)	238, 271, 324, 379, 396, 433
BsiHKAI	GWGCWC	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	79
BsnI	GGCC	6 cut(s)	238, 271, 324, 379, 396, 433
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	160
BspANI	GGCC	6 cut(s)	238, 271, 324, 379, 396, 433
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	39, 208
BspQI	GCTCTTC	1 cut(s)	273
BsrI	ACTGG	3 cut(s)	185, 242, 272
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	398
Bst2UI	CCWGG	3 cut(s)	309, 363, 435
Bst6I	CTCTTC	2 cut(s)	138, 273
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	4 cut(s)	232, 322, 361, 376
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNI	CCWGG	3 cut(s)	309, 363, 435
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	3 cut(s)	307, 361, 433
BstV1I	GCAGC	1 cut(s)	78
BstXI	CCANNNNNNTGG	1 cut(s)	94
BsuRI	GGCC	6 cut(s)	238, 271, 324, 379, 396, 433
BtsCI	GGATG	4 cut(s)	232, 322, 361, 376
BtsIMutI	CAGTG	1 cut(s)	142
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	8 cut(s)	207, 236, 250, 269, 323, 377, 395, 431
CsiI	ACCWGGT	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	2 cut(s)	61, 175
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	138, 273
EarI	CTCTTC	2 cut(s)	138, 273
Eco130I	CCWWGG	1 cut(s)	398
Eco47I	GGWCC	2 cut(s)	207, 250
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	3 cut(s)	307, 361, 433
EcoT14I	CCWWGG	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	398
FaeI	CATG	2 cut(s)	64, 178
FaiI	YATR	9 cut(s)	33, 49, 51, 62, 72, 107, 159, 176, 390
FatI	CATG	2 cut(s)	60, 174
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	4 cut(s)	239, 329, 368, 383
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	2 cut(s)	344, 416
GluI	GCNGC	1 cut(s)	92
GsuI	CTGGAG	2 cut(s)	116, 225
HaeIII	GGCC	6 cut(s)	238, 271, 324, 379, 396, 433
Hin1II	CATG	2 cut(s)	64, 178
Hpy166II	GTNNAC	2 cut(s)	58, 250
Hpy188I	TCNGA	2 cut(s)	259, 406
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	2 cut(s)	58, 250
HpyAV	CCTTC	4 cut(s)	197, 227, 260, 481
HpyCH4V	TGCA	2 cut(s)	66, 140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	64, 178
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	160
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	1 cut(s)	78
MabI	ACCWGGT	1 cut(s)	361
MaeI	CTAG	2 cut(s)	344, 416
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	4 cut(s)	155, 212, 230, 290
MhlI	GDGCHC	1 cut(s)	285
MnlI	CCTC	5 cut(s)	120, 178, 217, 249, 286
MseI	TTAA	1 cut(s)	149
MspR9I	CCNGG	3 cut(s)	309, 363, 435
MvaI	CCWGG	3 cut(s)	309, 363, 435
MwoI	GCNNNNNNNGC	1 cut(s)	444
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	64, 178
NlaIV	GGNNCC	2 cut(s)	39, 208
NspI	RCATGY	1 cut(s)	64
PagI	TCATGA	1 cut(s)	174
PciI	ACATGT	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	273
PkrI	GCNGC	1 cut(s)	93
PscI	ACATGT	1 cut(s)	60
Psp6I	CCWGG	3 cut(s)	307, 361, 433
PspGI	CCWGG	3 cut(s)	307, 361, 433
PspN4I	GGNNCC	2 cut(s)	39, 208
PspPI	GGNCC	8 cut(s)	207, 236, 250, 269, 323, 377, 395, 431
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	8 cut(s)	207, 236, 250, 269, 323, 377, 395, 431
ScrFI	CCNGG	3 cut(s)	309, 363, 435
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	93, 170, 255, 313, 367, 404, 492
SexAI	ACCWGGT	1 cut(s)	361
SinI	GGWCC	2 cut(s)	207, 250
SspMI	CTAG	2 cut(s)	344, 416
StyD4I	CCNGG	3 cut(s)	307, 361, 433
StyI	CCWWGG	1 cut(s)	398
TaqI	TCGA	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	1 cut(s)	91
TspDTI	ATGAA	6 cut(s)	66, 163, 191, 246, 279, 372
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	207, 250
XceI	RCATGY	1 cut(s)	64
XspI	CTAG	2 cut(s)	344, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.