RLG00000036677

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015772
Physical Location & Seq
Forward (+)
83299002 .. 83300912
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036677

Sequence Viewer

Length: 516 bp
ATGAACTGGTGGATTGATTATGTAGAAGAAGGGTCTAATATTAGTGAAGATGAGGATGATGAAGGGCCTCCAGTTGTGGACCTATCAAATAATGAAGGGCTAGTTGATGTGGATGGCCAAGTAAGGATGATGGGACAAACAACCATGATGGCCCAAGGTGAGGTGGCTCCACCTCCTGGAAAAATCAAGCTGCCAAAGGTCAACTACTTTCAGGCACCCAATGAGAATGTACAAGCCCAACCTAGTGAGAATGAAGAAGCCCAGCCTCAGCCTATGCATATGCTTCCCCAGCCAGGGCCTATGCCTTCCCAAACTGCTGACCTTGTGCAGCCCCAATCTCAGAGTGACCAAGGGCCCCAAGTGGATTATATGGCTACCCAGCAGTCCCAGACTACATCATCTGCCCCAGAAGGAGGATCCCAGCCCCAGTTCAAAGCTAGGAGGTTCAAATCCCTTGTTCATAGGAGACCCAAGCCTCAAAATGCACCCCCAAGCCCACCAAGTTCAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.78

Weight (kDa)

4.39

Isoelectric Point (pI)

77.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 176
AclWI GGATC 2 cut(s) 411, 424
AcoI YGGCCR 1 cut(s) 115
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 5 cut(s) 160, 176, 293, 294, 413
AgsI TTSAA 2 cut(s) 433, 448
AjnI CCWGG 2 cut(s) 175, 292
AluBI AGCT 2 cut(s) 190, 437
AluI AGCT 2 cut(s) 190, 437
Alw26I GTCTC 1 cut(s) 460
AlwI GGATC 2 cut(s) 411, 424
AoxI GGCC 5 cut(s) 65, 115, 150, 296, 353
ApaI GGGCCC 1 cut(s) 357
ApeKI GCWGC 2 cut(s) 190, 328
AspS9I GGNCC 6 cut(s) 65, 79, 151, 296, 353, 354
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 357
BalI TGGCCA 1 cut(s) 117
BamHI GGATCC 1 cut(s) 416
BanI GGYRCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 357
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 177, 340
BccI CCATC 3 cut(s) 107, 124, 142
BciT130I CCWGG 2 cut(s) 177, 294
BcoDI GTCTC 1 cut(s) 460
BfaI CTAG 3 cut(s) 101, 243, 438
BisI GCNGC 2 cut(s) 191, 329
BlsI GCNGC 2 cut(s) 192, 330
Bme1390I CCNGG 2 cut(s) 177, 294
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 6 cut(s) 65, 79, 151, 296, 353, 354
BmiI GGNNCC 5 cut(s) 168, 216, 355, 356, 418
BmrFI CCNGG 2 cut(s) 177, 294
BmrI ACTGGG 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 460
BsaJI CCNNGG 3 cut(s) 154, 293, 349
Bsc4I CCNNNNNNNGG 5 cut(s) 160, 176, 293, 294, 413
Bse1I ACTGG 3 cut(s) 11, 71, 427
BseBI CCWGG 2 cut(s) 177, 294
BseDI CCNNGG 3 cut(s) 154, 293, 349
BseGI GGATG 3 cut(s) 61, 118, 132
BseLI CCNNNNNNNGG 5 cut(s) 160, 176, 293, 294, 413
BseMII CTCAG 2 cut(s) 281, 353
BseNI ACTGG 3 cut(s) 11, 71, 427
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 2 cut(s) 177, 340
BseYI CCCAGC 4 cut(s) 261, 288, 378, 420
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 5 cut(s) 67, 117, 152, 298, 355
BshNI GGYRCC 1 cut(s) 214
BslFI GGGAC 2 cut(s) 147, 370
BslI CCNNNNNNNGG 5 cut(s) 160, 176, 293, 294, 413
BsmAI GTCTC 1 cut(s) 460
BsmFI GGGAC 2 cut(s) 147, 370
BsnI GGCC 5 cut(s) 67, 117, 152, 298, 355
Bso31I GGTCTC 1 cut(s) 460
Bsp120I GGGCCC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 357
Bsp1407I TGTACA 1 cut(s) 229
Bsp143I GATC 1 cut(s) 416
BspANI GGCC 5 cut(s) 67, 117, 152, 298, 355
BspCNI CTCAG 2 cut(s) 280, 352
BspLI GGNNCC 5 cut(s) 168, 216, 355, 356, 418
BspPI GGATC 2 cut(s) 411, 424
BspT107I GGYRCC 1 cut(s) 214
BspTNI GGTCTC 1 cut(s) 460
BsrGI TGTACA 1 cut(s) 229
BsrI ACTGG 3 cut(s) 11, 71, 427
BssECI CCNNGG 3 cut(s) 154, 293, 349
BssMI GATC 1 cut(s) 416
BssT1I CCWWGG 2 cut(s) 154, 349
Bst2UI CCWGG 2 cut(s) 177, 294
BstAUI TGTACA 1 cut(s) 229
BstDEI CTNAG 2 cut(s) 267, 339
BstF5I GGATG 3 cut(s) 61, 118, 132
BstKTI GATC 1 cut(s) 419
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 1 cut(s) 416
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNI CCWGG 2 cut(s) 177, 294
BstSCI CCNGG 2 cut(s) 175, 292
BstSLI GKGCMC 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 177, 340
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BsuRI GGCC 5 cut(s) 67, 117, 152, 298, 355
BtsCI GGATG 3 cut(s) 61, 118, 132
Cfr13I GGNCC 6 cut(s) 65, 79, 151, 296, 353, 354
Csp6I GTAC 1 cut(s) 230
CviAII CATG 1 cut(s) 145
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 2 cut(s) 267, 339
DpnI GATC 1 cut(s) 418
DpnII GATC 1 cut(s) 416
EaeI YGGCCR 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 154, 349
Eco24I GRGCYC 1 cut(s) 357
Eco31I GGTCTC 1 cut(s) 460
Eco47I GGWCC 1 cut(s) 79
EcoO109I RGGNCCY 4 cut(s) 65, 296, 353, 354
EcoRII CCWGG 2 cut(s) 175, 292
EcoT14I CCWWGG 2 cut(s) 154, 349
EcoT22I ATGCAT 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 357
ErhI CCWWGG 2 cut(s) 154, 349
FaeI CATG 1 cut(s) 148
FaiI YATR 9 cut(s) 21, 146, 275, 279, 281, 302, 369, 371, 462
FaqI GGGAC 2 cut(s) 147, 370
FatI CATG 1 cut(s) 144
FauNDI CATATG 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 191, 329
FokI GGATG 3 cut(s) 68, 125, 139
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 2 cut(s) 191, 329
FspBI CTAG 3 cut(s) 101, 243, 438
GluI GCNGC 2 cut(s) 191, 329
GsaI CCCAGC 4 cut(s) 265, 292, 382, 424
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 5 cut(s) 67, 117, 152, 298, 355
Hin1II CATG 1 cut(s) 148
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 79, 202
Hpy188I TCNGA 2 cut(s) 342, 508
Hpy8I GTNNAC 2 cut(s) 79, 202
HpyAV CCTTC 5 cut(s) 23, 56, 89, 315, 404
HpyCH4V TGCA 3 cut(s) 277, 328, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 2 cut(s) 267, 339
Hsp92II CATG 1 cut(s) 148
Kzo9I GATC 1 cut(s) 416
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 2 cut(s) 177, 340
MaeI CTAG 3 cut(s) 101, 243, 438
MaeIII GTNAC 1 cut(s) 344
MalI GATC 1 cut(s) 418
MboI GATC 1 cut(s) 416
MboII GAAGA 3 cut(s) 38, 59, 266
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 1 cut(s) 357
MlsI TGGCCA 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 117
MnlI CCTC 8 cut(s) 46, 78, 154, 183, 276, 407, 435, 486
Mox20I TGGCCA 1 cut(s) 117
Mph1103I ATGCAT 1 cut(s) 279
MscI TGGCCA 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 117
MspR9I CCNGG 2 cut(s) 177, 294
MvaI CCWGG 2 cut(s) 177, 294
MwoI GCNNNNNNNGC 1 cut(s) 289
NdeI CATATG 1 cut(s) 279
NdeII GATC 1 cut(s) 416
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 5 cut(s) 168, 216, 355, 356, 418
NmuCI GTSAC 1 cut(s) 344
NsiI ATGCAT 1 cut(s) 279
PflMI CCANNNNNTGG 1 cut(s) 176
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 2 cut(s) 192, 330
Psp6I CCWGG 2 cut(s) 175, 292
PspFI CCCAGC 4 cut(s) 261, 288, 378, 420
PspGI CCWGG 2 cut(s) 175, 292
PspN4I GGNNCC 5 cut(s) 168, 216, 355, 356, 418
PspOMI GGGCCC 1 cut(s) 353
PspPI GGNCC 6 cut(s) 65, 79, 151, 296, 353, 354
PsuI RGATCY 1 cut(s) 416
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
SatI GCNGC 2 cut(s) 191, 329
Sau3AI GATC 1 cut(s) 416
Sau96I GGNCC 6 cut(s) 65, 79, 151, 296, 353, 354
ScrFI CCNGG 2 cut(s) 177, 294
SduI GDGCHC 1 cut(s) 357
SinI GGWCC 1 cut(s) 79
SspI AATATT 1 cut(s) 40
SspMI CTAG 3 cut(s) 101, 243, 438
StyD4I CCNGG 2 cut(s) 175, 292
StyI CCWWGG 2 cut(s) 154, 349
TatI WGTACW 1 cut(s) 229
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 2 cut(s) 190, 328
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 5 cut(s) 17, 75, 108, 267, 449
Van91I CCANNNNNTGG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 79
XspI CTAG 3 cut(s) 101, 243, 438
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.