RLG00000014626

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015772
Physical Location & Seq
Forward (+)
55536825 .. 55539319
2495 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014626

Sequence Viewer

Length: 783 bp
ATGTTGAACCGTGCGGTTTTGAATCGAGATGGGATCTCAATGGATTGGATTGTAAGTTGGATGAAGGAGCTAGGCGGTTTCTCATCGTCCACCAACACGGCCGAGTATGACGGGATCAAATTGGGTGTGGTGCTGGTGGAGGACGTGGTGACATCGGCGAAGGGCGCGGTTTCTTCTCCTGCTTGGGTAGCAATGGTGATTTTCAGAATCAGGTGGTTGAGGAGGTTAAATGAATTAGGTTTAGGGTTTATGGCTGGTGGGGAATTTAAAATCACAACTGTTTTGGGGGTTTATGGTAGTCAAAGGCTAAAGTTGTCAAATCTAGAAGAAGGGCCCATTAGTGATGATGGGGATAATGATGGGCCTCTAATTGTGGAGCTGTCAGATGATGATGGGCCATTTGTAGATGAAACTATAGAGGATAATGTTGTTCCAGGTAACCATTATGGGCTGGGGATTGGTACTGGGCCAAGGGTTGGTGATGGGCCAAGGAATGTGGACGGGCCAAGGCTTAAGAACCAATCAAGGAAAAAAAGAACTTTAGACAAAGGGAAACAGAAGGTGCAGCATGATGACATTCCAACACCAAAGAAAAAGAAAGGCAGGCCTAGTAAGGTTGCTCAGCCTAGACATGCAACACGGATTAGAGATTCTGACATTGAGTTGGATAATAAGGGTGATGACCAGCAGTTTGCTGAGAATGTTGACGGTGATCCATCTAGAGTAAATGAATGGGATGATATGGGCTTTAAGGGAAATATTTCAGAGGAGGATGGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

28.55

Weight (kDa)

5.07

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 476
AccII CGCG 1 cut(s) 167
AciI CCGC 3 cut(s) 14, 75, 167
AclWI GGATC 3 cut(s) 41, 122, 707
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 1 cut(s) 463
AfiI CCNNNNNNNGG 1 cut(s) 476
AflII CTTAAG 1 cut(s) 512
AgsI TTSAA 2 cut(s) 7, 22
AjiI CACGTC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 433
AluBI AGCT 2 cut(s) 70, 379
AluI AGCT 2 cut(s) 70, 379
AlwI GGATC 3 cut(s) 41, 122, 707
AoxI GGCC 8 cut(s) 99, 332, 362, 395, 467, 485, 503, 605
ApaI GGGCCC 1 cut(s) 336
ApeKI GCWGC 1 cut(s) 565
ApoI RAATTY 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 674, 706
Asp700I GAANNNNTTC 1 cut(s) 760
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 7 cut(s) 332, 333, 362, 395, 467, 485, 503
AsuHPI GGTGA 5 cut(s) 160, 208, 491, 689, 722
BaeGI GKGCMC 1 cut(s) 336
BanII GRGCYC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 577
BccI CCATC 7 cut(s) 23, 341, 353, 386, 476, 724, 767
BceAI ACGGC 1 cut(s) 114
BciT130I CCWGG 1 cut(s) 435
BfaI CTAG 5 cut(s) 71, 323, 609, 627, 720
BfmI CTRYAG 1 cut(s) 414
BfrI CTTAAG 1 cut(s) 512
BisI GCNGC 1 cut(s) 566
BlpI GCTNAGC 1 cut(s) 621
BlsI GCNGC 1 cut(s) 567
Bme1390I CCNGG 1 cut(s) 435
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 7 cut(s) 332, 333, 362, 395, 467, 485, 503
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 435
BmrI ACTGGG 1 cut(s) 474
BmuI ACTGGG 1 cut(s) 474
Bpu1102I GCTNAGC 1 cut(s) 621
BsaJI CCNNGG 3 cut(s) 470, 488, 506
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 1 cut(s) 469
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 3 cut(s) 470, 488, 506
BseGI GGATG 3 cut(s) 66, 742, 778
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 635, 687
BseNI ACTGG 1 cut(s) 469
BseRI GAGGAG 2 cut(s) 235, 782
BseSI GKGCMC 1 cut(s) 336
BseX3I CGGCCG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 577
BseYI CCCAGC 1 cut(s) 451
BsgI GTGCAG 1 cut(s) 584
Bsh1236I CGCG 1 cut(s) 167
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 8 cut(s) 101, 334, 364, 397, 469, 487, 505, 607
BsiEI CGRYCG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 476
BsnI GGCC 8 cut(s) 101, 334, 364, 397, 469, 487, 505, 607
Bsp120I GGGCCC 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 3 cut(s) 33, 114, 712
Bsp1720I GCTNAGC 1 cut(s) 621
BspACI CCGC 3 cut(s) 14, 75, 167
BspANI GGCC 8 cut(s) 101, 334, 364, 397, 469, 487, 505, 607
BspCNI CTCAG 2 cut(s) 634, 688
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 334
BspPI GGATC 3 cut(s) 41, 122, 707
BspTI CTTAAG 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 3 cut(s) 470, 488, 506
BssMI GATC 3 cut(s) 33, 114, 712
BssT1I CCWWGG 3 cut(s) 470, 488, 506
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 3 cut(s) 11, 280, 710
BstAFI CTTAAG 1 cut(s) 512
BstC8I GCNNGC 1 cut(s) 605
BstDEI CTNAG 2 cut(s) 621, 696
BstEII GGTNACC 1 cut(s) 437
BstF5I GGATG 3 cut(s) 66, 742, 778
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 3 cut(s) 36, 117, 715
BstMBI GATC 3 cut(s) 33, 114, 712
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 164, 188
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 1 cut(s) 635
BstPI GGTNACC 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 433
BstSFI CTRYAG 1 cut(s) 414
BstSLI GKGCMC 1 cut(s) 336
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 577
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BstZI CGGCCG 1 cut(s) 99
BsuRI GGCC 8 cut(s) 101, 334, 364, 397, 469, 487, 505, 607
BtrI CACGTC 1 cut(s) 145
BtsCI GGATG 3 cut(s) 66, 742, 778
Cac8I GCNNGC 1 cut(s) 605
CfoI GCGC 1 cut(s) 167
Cfr13I GGNCC 7 cut(s) 332, 333, 362, 395, 467, 485, 503
Csp6I GTAC 1 cut(s) 462
CspCI CAANNNNNGTGG 2 cut(s) 477, 512
CviAII CATG 2 cut(s) 569, 632
CviQI GTAC 1 cut(s) 462
DdeI CTNAG 2 cut(s) 621, 696
DpnI GATC 3 cut(s) 35, 116, 714
DpnII GATC 3 cut(s) 33, 114, 712
DraI TTTAAA 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 99
EagI CGGCCG 1 cut(s) 99
EclXI CGGCCG 1 cut(s) 99
Eco130I CCWWGG 3 cut(s) 470, 488, 506
Eco147I AGGCCT 1 cut(s) 607
Eco24I GRGCYC 1 cut(s) 336
Eco52I CGGCCG 1 cut(s) 99
Eco91I GGTNACC 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 332
EcoO65I GGTNACC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 433
EcoT14I CCWWGG 3 cut(s) 470, 488, 506
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 3 cut(s) 470, 488, 506
FaeI CATG 2 cut(s) 572, 635
FaiI YATR 8 cut(s) 108, 251, 294, 416, 447, 570, 633, 743
FatI CATG 2 cut(s) 568, 631
Fnu4HI GCNGC 1 cut(s) 566
FokI GGATG 2 cut(s) 73, 749
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 566
FspBI CTAG 5 cut(s) 71, 323, 609, 627, 720
GlaI GCGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 566
GsaI CCCAGC 1 cut(s) 455
HaeIII GGCC 8 cut(s) 101, 334, 364, 397, 469, 487, 505, 607
HhaI GCGC 1 cut(s) 167
Hin1II CATG 2 cut(s) 572, 635
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 1 cut(s) 706
HindII GTYRAC 1 cut(s) 706
HinfI GANTC 3 cut(s) 22, 207, 650
HphI GGTGA 5 cut(s) 160, 208, 491, 689, 722
Hpy166II GTNNAC 3 cut(s) 90, 499, 706
Hpy188I TCNGA 4 cut(s) 206, 385, 655, 766
Hpy188III TCNNGA 3 cut(s) 26, 323, 720
Hpy8I GTNNAC 3 cut(s) 90, 499, 706
HpyAV CCTTC 4 cut(s) 58, 154, 323, 553
HpyCH4III ACNGT 3 cut(s) 11, 280, 710
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 565, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 188
HpyF3I CTNAG 2 cut(s) 621, 696
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 2 cut(s) 572, 635
HspAI GCGC 1 cut(s) 165
Kzo9I GATC 3 cut(s) 33, 114, 712
LmnI GCTCC 2 cut(s) 67, 376
Lsp1109I GCAGC 1 cut(s) 577
MaeI CTAG 5 cut(s) 71, 323, 609, 627, 720
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 148, 437
MalI GATC 3 cut(s) 35, 116, 714
MboI GATC 3 cut(s) 33, 114, 712
MboII GAAGA 2 cut(s) 165, 338
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 5 cut(s) 119, 233, 263, 369, 778
MmeI TCCRAC 3 cut(s) 38, 605, 645
MnlI CCTC 7 cut(s) 133, 213, 216, 375, 412, 760, 763
MroXI GAANNNNTTC 1 cut(s) 760
MseI TTAA 5 cut(s) 227, 267, 513, 750, 781
MspCI CTTAAG 1 cut(s) 512
MspR9I CCNGG 1 cut(s) 435
MvaI CCWGG 1 cut(s) 435
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 2 cut(s) 164, 188
NdeII GATC 3 cut(s) 33, 114, 712
NlaIII CATG 2 cut(s) 572, 635
NlaIV GGNNCC 1 cut(s) 334
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 148
NspI RCATGY 1 cut(s) 635
PceI AGGCCT 1 cut(s) 607
PdmI GAANNNNTTC 1 cut(s) 760
PfeI GAWTC 3 cut(s) 22, 207, 650
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 433
PspEI GGTNACC 1 cut(s) 437
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 1 cut(s) 433
PspN4I GGNNCC 1 cut(s) 334
PspOMI GGGCCC 1 cut(s) 332
PspPI GGNCC 7 cut(s) 332, 333, 362, 395, 467, 485, 503
PsuI RGATCY 1 cut(s) 33
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
SaqAI TTAA 5 cut(s) 227, 267, 513, 750, 781
SatI GCNGC 1 cut(s) 566
Sau3AI GATC 3 cut(s) 33, 114, 712
Sau96I GGNCC 7 cut(s) 332, 333, 362, 395, 467, 485, 503
ScrFI CCNGG 1 cut(s) 435
SduI GDGCHC 1 cut(s) 336
SetI ASST 9 cut(s) 72, 147, 215, 227, 241, 381, 439, 564, 618
SfcI CTRYAG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 5 cut(s) 119, 233, 263, 369, 778
SseBI AGGCCT 1 cut(s) 607
SsiI CCGC 3 cut(s) 14, 75, 167
SspI AATATT 1 cut(s) 760
SspMI CTAG 5 cut(s) 71, 323, 609, 627, 720
StuI AGGCCT 1 cut(s) 607
StyD4I CCNGG 1 cut(s) 433
StyI CCWWGG 3 cut(s) 470, 488, 506
TaaI ACNGT 3 cut(s) 11, 280, 710
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 25
TasI AATT 5 cut(s) 119, 233, 263, 369, 778
TfiI GAWTC 3 cut(s) 22, 207, 650
Tru1I TTAA 5 cut(s) 227, 267, 513, 750, 781
Tru9I TTAA 5 cut(s) 227, 267, 513, 750, 781
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 565
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 4 cut(s) 77, 246, 423, 744
TspGWI ACGGA 1 cut(s) 655
Van91I CCANNNNNTGG 1 cut(s) 476
Vha464I CTTAAG 1 cut(s) 512
XapI RAATTY 1 cut(s) 263
XbaI TCTAGA 2 cut(s) 322, 719
XceI RCATGY 1 cut(s) 635
XmnI GAANNNNTTC 1 cut(s) 760
XspI CTAG 5 cut(s) 71, 323, 609, 627, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.