Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0015772

Physical Location & Seq

Genomic Coordinates Forward (+)

5720115 .. 5720480

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG056100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCAGATGAGCTTGACAAGTATGATGAAGATTTAGATCACACTTCTTTCATGAACTGGTGGATTGATGATGTAGAAGAAGGGTCCATTAGTGATGACGGGGATGATGATGGGCCACCAATTTTGGAGCTGTCAGATGATGATGGGCCATTTGTAGATGAAACTACAGAGGATAATGTTGTTCCAAGTAACCATGATGGGCTGGGGTTTGGTACTGGGCCAAGGCCTGATGATGGGTCAGGCCTTGAGAGCCAATCAAGGAAAAAAAGAACTTTAGACAAAGGGAAACAGAAGGTGCAGCATGATGACATTCCAGCACCAAAGAAAAAGAAAGGCAGGCCAAGTAAGGTTGTTCAGCCTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

121

Amino Acids

13.42

Weight (kDa)

4.36

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015772)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011729 RLG00000014626 RLG00000021567 RLG00000030167 RLG00000036677
rosa_roxburghii	Rroxscaffold_1G00004760 Rroxscaffold_2G00085340 Rroxscaffold_7G00171820 Rroxscaffold_7G00178220 Rroxscaffold_7G00178230
rosa_samantha	Rh2AG422800 Rh5DG541800 Rh6AG097700 Rh6BG378200 Rh6CG056100 Rh6CG383800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	13, 130
AluI	AGCT	2 cut(s)	13, 130
AoxI	GGCC	6 cut(s)	113, 146, 218, 224, 241, 338
ApeKI	GCWGC	1 cut(s)	298
AspS9I	GGNCC	4 cut(s)	84, 113, 146, 218
AvaII	GGWCC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	4 cut(s)	104, 137, 191, 227
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	4 cut(s)	84, 113, 146, 218
BmiI	GGNNCC	1 cut(s)	85
BmrI	ACTGGG	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	2 cut(s)	62, 220
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseNI	ACTGG	2 cut(s)	62, 220
BseXI	GCAGC	1 cut(s)	310
BseYI	CCCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	317
BshFI	GGCC	6 cut(s)	115, 148, 220, 226, 243, 340
BslI	CCNNNNNNNGG	1 cut(s)	233
BsnI	GGCC	6 cut(s)	115, 148, 220, 226, 243, 340
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	6 cut(s)	115, 148, 220, 226, 243, 340
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	62, 220
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	310
BsuRI	GGCC	6 cut(s)	115, 148, 220, 226, 243, 340
BtsCI	GGATG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	338
CciI	TCATGA	1 cut(s)	51
Cfr13I	GGNCC	4 cut(s)	84, 113, 146, 218
Csp6I	GTAC	1 cut(s)	213
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	3 cut(s)	52, 194, 302
CviQI	GTAC	1 cut(s)	213
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	221
Eco147I	AGGCCT	2 cut(s)	226, 243
Eco47I	GGWCC	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	3 cut(s)	55, 197, 305
FaiI	YATR	4 cut(s)	24, 53, 195, 303
FatI	CATG	3 cut(s)	51, 193, 301
Fnu4HI	GCNGC	1 cut(s)	299
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	299
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	1 cut(s)	299
GsaI	CCCAGC	1 cut(s)	206
HaeIII	GGCC	6 cut(s)	115, 148, 220, 226, 243, 340
Hin1II	CATG	3 cut(s)	55, 197, 305
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	74, 286
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	55, 197, 305
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	7 cut(s)	43, 188, 201, 225, 240, 322, 327
Lsp1109I	GCAGC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	2 cut(s)	41, 89
MluCI	AATT	1 cut(s)	120
MnlI	CCTC	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	249
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	3 cut(s)	55, 197, 305
NlaIV	GGNNCC	1 cut(s)	85
PagI	TCATGA	1 cut(s)	51
PceI	AGGCCT	2 cut(s)	226, 243
PkrI	GCNGC	1 cut(s)	300
PspFI	CCCAGC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	4 cut(s)	84, 113, 146, 218
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	4 cut(s)	84, 113, 146, 218
SetI	ASST	4 cut(s)	15, 132, 297, 351
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	1 cut(s)	120
SseBI	AGGCCT	2 cut(s)	226, 243
SspMI	CTAG	1 cut(s)	360
StuI	AGGCCT	2 cut(s)	226, 243
StyI	CCWWGG	1 cut(s)	221
TasI	AATT	1 cut(s)	120
TseI	GCWGC	1 cut(s)	298
TspDTI	ATGAA	4 cut(s)	40, 42, 68, 174
VpaK11BI	GGWCC	1 cut(s)	84
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.