Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015772

Physical Location & Seq

Genomic Coordinates Forward (+)

7679806 .. 7680387

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTAGATGAGCTTGACAAGTATGATGAGAATTTAGATCACACTTCTTTCATGAACTGGTGGATTGATAATGTAGAAGAAGGGTCCATTAGTGATGATGGGGATGATGATGGGCCTTCAATTGTGGAGTCGTCGGATGATGGTGGGCCATTTGTAGATGAAACTACAGAGGATAATGTTGTTCCGGGTAACCATGATGGGTTGGGTGTTGGTACTGGGCTGGGCCAAGGGTTGGTGATGGACAAAGGGAAACGAAGGTGCAGCATGATGACATTCCGGGCACCAAAGAAAAAGAAAGGCGTGTCTAGTAAGGTTGTTCGGCCTAGATATGCAACACGGTCCGGGGGGCAATGTTCTAGGCAAGGAGAAGGGACATCAAATGGTGGGAGCAGACCCTTTGCAAGAGGAAGATTGGGATTCAAGTTCTACCGATTCGATGACCCTAACTTTGATGGGATTATACCTAACTTTGATGGAATTAGAGATTCGACATTCTTTGGACACAAGAAGGGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.91

Weight (kDa)

5.23

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015772)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011729 RLG00000014626 RLG00000021567 RLG00000030167 RLG00000036677
rosa_roxburghii	Rroxscaffold_1G00004760 Rroxscaffold_2G00085340 Rroxscaffold_7G00171820 Rroxscaffold_7G00178220 Rroxscaffold_7G00178230
rosa_samantha	Rh2AG422800 Rh5DG541800 Rh6AG097700 Rh6BG378200 Rh6CG056100 Rh6CG383800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AccB7I	CCANNNNNTGG	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	31
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	120, 421
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
AoxI	GGCC	5 cut(s)	113, 146, 223, 320, 511
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	31
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
AspS9I	GGNCC	6 cut(s)	84, 113, 146, 223, 339, 511
AsuC2I	CCSGG	3 cut(s)	186, 278, 343
AsuHPI	GGTGA	1 cut(s)	247
AvaII	GGWCC	2 cut(s)	84, 339
BaeGI	GKGCMC	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	7 cut(s)	92, 104, 134, 191, 232, 446, 467
BcnI	CCSGG	3 cut(s)	186, 278, 343
BfaI	CTAG	3 cut(s)	306, 324, 357
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
Bme1390I	CCNGG	3 cut(s)	186, 278, 343
Bme18I	GGWCC	2 cut(s)	84, 339
BmgT120I	GGNCC	6 cut(s)	84, 113, 146, 223, 339, 511
BmiI	GGNNCC	2 cut(s)	85, 282
BmrFI	CCNGG	3 cut(s)	186, 278, 343
BmrI	ACTGGG	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	225
BpuMI	CCSGG	3 cut(s)	186, 278, 343
BsaJI	CCNNGG	2 cut(s)	226, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	2 cut(s)	62, 220
Bse3DI	GCAATG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	226, 342
BseGI	GGATG	2 cut(s)	109, 142
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	356
BseNI	ACTGG	2 cut(s)	62, 220
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	273
BseYI	CCCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	280
BshFI	GGCC	5 cut(s)	115, 148, 225, 322, 513
BshNI	GGYRCC	1 cut(s)	280
BsiSI	CCGG	3 cut(s)	185, 277, 342
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	5 cut(s)	115, 148, 225, 322, 513
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	5 cut(s)	115, 148, 225, 322, 513
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	85, 282
BspT107I	GGYRCC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	356
BsrI	ACTGG	2 cut(s)	62, 220
BssECI	CCNNGG	2 cut(s)	226, 342
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	339
BstEII	GGTNACC	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	109, 142
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	3 cut(s)	184, 276, 341
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	273
BsuRI	GGCC	5 cut(s)	115, 148, 225, 322, 513
BtsCI	GGATG	2 cut(s)	109, 142
CciI	TCATGA	1 cut(s)	51
Cfr13I	GGNCC	6 cut(s)	84, 113, 146, 223, 339, 511
CpoI	CGGWCCG	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	213
CspI	CGGWCCG	1 cut(s)	339
CviAII	CATG	3 cut(s)	52, 194, 265
CviJI	RGCY	7 cut(s)	13, 115, 148, 220, 225, 322, 513
CviKI_1	RGCY	7 cut(s)	13, 115, 148, 220, 225, 322, 513
CviQI	GTAC	1 cut(s)	213
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	226
Eco47I	GGWCC	2 cut(s)	84, 339
Eco91I	GGTNACC	1 cut(s)	188
EcoO65I	GGTNACC	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	3 cut(s)	55, 197, 268
FaiI	YATR	6 cut(s)	24, 53, 195, 266, 330, 461
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	3 cut(s)	51, 193, 264
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	2 cut(s)	116, 149
Fsp4HI	GCNGC	1 cut(s)	262
FspBI	CTAG	3 cut(s)	306, 324, 357
GluI	GCNGC	1 cut(s)	262
GsaI	CCCAGC	1 cut(s)	224
HaeIII	GGCC	5 cut(s)	115, 148, 225, 322, 513
HapII	CCGG	3 cut(s)	185, 277, 342
Hin1II	CATG	3 cut(s)	55, 197, 268
HinfI	GANTC	4 cut(s)	128, 417, 432, 485
HpaII	CCGG	3 cut(s)	185, 277, 342
HphI	GGTGA	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	5 cut(s)	74, 126, 249, 362, 502
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	261, 332, 401
Hsp92II	CATG	3 cut(s)	55, 197, 268
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	387
LpnPI	CCDG	6 cut(s)	43, 198, 201, 206, 290, 355
Lsp1109I	GCAGC	1 cut(s)	273
MaeI	CTAG	3 cut(s)	306, 324, 357
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	2 cut(s)	89, 420
MfeI	CAATTG	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	3 cut(s)	31, 120, 477
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	2 cut(s)	163, 398
MspI	CCGG	3 cut(s)	185, 277, 342
MspR9I	CCNGG	3 cut(s)	186, 278, 343
MunI	CAATTG	1 cut(s)	120
NciI	CCSGG	3 cut(s)	186, 278, 343
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	3 cut(s)	55, 197, 268
NlaIV	GGNNCC	2 cut(s)	85, 282
PagI	TCATGA	1 cut(s)	51
PfeI	GAWTC	3 cut(s)	417, 432, 485
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	263
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PspEI	GGTNACC	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	85, 282
PspPI	GGNCC	6 cut(s)	84, 113, 146, 223, 339, 511
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
Rsr2I	CGGWCCG	1 cut(s)	339
RsrII	CGGWCCG	1 cut(s)	339
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	6 cut(s)	84, 113, 146, 223, 339, 511
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	3 cut(s)	186, 278, 343
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	4 cut(s)	15, 260, 315, 466
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	2 cut(s)	84, 339
Sse9I	AATT	3 cut(s)	31, 120, 477
SspMI	CTAG	3 cut(s)	306, 324, 357
StyD4I	CCNGG	3 cut(s)	184, 276, 341
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	339
TaqI	TCGA	2 cut(s)	435, 488
TasI	AATT	3 cut(s)	31, 120, 477
TfiI	GAWTC	3 cut(s)	417, 432, 485
TseI	GCWGC	1 cut(s)	261
TspDTI	ATGAA	3 cut(s)	40, 68, 174
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	2 cut(s)	84, 339
XapI	RAATTY	1 cut(s)	31
XspI	CTAG	3 cut(s)	306, 324, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.