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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000011729 RLG00000014626 RLG00000021567 RLG00000030167 RLG00000036677 |
| rosa_roxburghii | Rroxscaffold_1G00004760 Rroxscaffold_2G00085340 Rroxscaffold_7G00171820 Rroxscaffold_7G00178220 Rroxscaffold_7G00178230 |
| rosa_samantha | Rh2AG422800 Rh5DG541800 Rh6AG097700 Rh6BG378200 Rh6CG056100 Rh6CG383800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 45, 49, 284, 299 |
| AclI | AACGTT | 2 cut(s) | 33, 534 |
| AclWI | GGATC | 1 cut(s) | 539 |
| AjnI | CCWGG | 1 cut(s) | 470 |
| Alw21I | GWGCWC | 1 cut(s) | 296 |
| Alw26I | GTCTC | 1 cut(s) | 59 |
| AlwI | GGATC | 1 cut(s) | 539 |
| AoxI | GGCC | 4 cut(s) | 249, 281, 338, 507 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 506, 538 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 408 |
| AspLEI | GCGC | 1 cut(s) | 632 |
| AspS9I | GGNCC | 5 cut(s) | 82, 221, 262, 281, 338 |
| AsuC2I | CCSGG | 1 cut(s) | 320 |
| AsuHPI | GGTGA | 2 cut(s) | 515, 670 |
| AvaII | GGWCC | 3 cut(s) | 82, 221, 262 |
| BbsI | GAAGAC | 1 cut(s) | 411 |
| Bbv12I | GWGCWC | 1 cut(s) | 296 |
| BccI | CCATC | 3 cut(s) | 188, 329, 556 |
| BceAI | ACGGC | 2 cut(s) | 264, 329 |
| BciT130I | CCWGG | 1 cut(s) | 472 |
| BcnI | CCSGG | 1 cut(s) | 320 |
| BcoDI | GTCTC | 1 cut(s) | 59 |
| BfaI | CTAG | 1 cut(s) | 552 |
| BfoI | RGCGCY | 1 cut(s) | 633 |
| BisI | GCNGC | 3 cut(s) | 45, 284, 299 |
| BlsI | GCNGC | 3 cut(s) | 46, 285, 300 |
| Bme1390I | CCNGG | 2 cut(s) | 320, 472 |
| Bme18I | GGWCC | 3 cut(s) | 82, 221, 262 |
| BmgT120I | GGNCC | 5 cut(s) | 82, 221, 262, 281, 338 |
| BmiI | GGNNCC | 3 cut(s) | 83, 222, 264 |
| BmrFI | CCNGG | 2 cut(s) | 320, 472 |
| BmsI | GCATC | 1 cut(s) | 77 |
| BpiI | GAAGAC | 1 cut(s) | 411 |
| BpuMI | CCSGG | 1 cut(s) | 320 |
| BsaAI | YACGTR | 1 cut(s) | 637 |
| BsaBI | GATNNNNATC | 1 cut(s) | 543 |
| BsaJI | CCNNGG | 1 cut(s) | 440 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 66, 96, 165, 195 |
| Bse8I | GATNNNNATC | 1 cut(s) | 543 |
| BseBI | CCWGG | 1 cut(s) | 472 |
| BseDI | CCNNGG | 1 cut(s) | 440 |
| BseGI | GGATG | 4 cut(s) | 246, 561, 574, 654 |
| BseJI | GATNNNNATC | 1 cut(s) | 543 |
| BseRI | GAGGAG | 1 cut(s) | 186 |
| BshFI | GGCC | 4 cut(s) | 251, 283, 340, 509 |
| BsiHKAI | GWGCWC | 1 cut(s) | 296 |
| BsiSI | CCGG | 1 cut(s) | 319 |
| BsmAI | GTCTC | 1 cut(s) | 59 |
| BsnI | GGCC | 4 cut(s) | 251, 283, 340, 509 |
| Bsp1286I | GDGCHC | 1 cut(s) | 296 |
| Bsp143I | GATC | 2 cut(s) | 58, 544 |
| BspACI | CCGC | 4 cut(s) | 45, 49, 284, 299 |
| BspANI | GGCC | 4 cut(s) | 251, 283, 340, 509 |
| BspLI | GGNNCC | 3 cut(s) | 83, 222, 264 |
| BspPI | GGATC | 1 cut(s) | 539 |
| BspQI | GCTCTTC | 2 cut(s) | 284, 648 |
| BssECI | CCNNGG | 1 cut(s) | 440 |
| BssMI | GATC | 2 cut(s) | 58, 544 |
| BssT1I | CCWWGG | 1 cut(s) | 440 |
| Bst2UI | CCWGG | 1 cut(s) | 472 |
| Bst4CI | ACNGT | 2 cut(s) | 143, 503 |
| Bst6I | CTCTTC | 2 cut(s) | 284, 648 |
| BstBAI | YACGTR | 1 cut(s) | 637 |
| BstC8I | GCNNGC | 4 cut(s) | 49, 296, 342, 437 |
| BstF5I | GGATG | 4 cut(s) | 246, 561, 574, 654 |
| BstH2I | RGCGCY | 1 cut(s) | 633 |
| BstHHI | GCGC | 1 cut(s) | 632 |
| BstKTI | GATC | 2 cut(s) | 61, 547 |
| BstMAI | GTCTC | 1 cut(s) | 59 |
| BstMBI | GATC | 2 cut(s) | 58, 544 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 350, 638 |
| BstNI | CCWGG | 1 cut(s) | 472 |
| BstSCI | CCNGG | 2 cut(s) | 318, 470 |
| BstV2I | GAAGAC | 1 cut(s) | 411 |
| BsuRI | GGCC | 4 cut(s) | 251, 283, 340, 509 |
| BtsCI | GGATG | 4 cut(s) | 246, 561, 574, 654 |
| Cac8I | GCNNGC | 4 cut(s) | 49, 296, 342, 437 |
| CfoI | GCGC | 1 cut(s) | 632 |
| Cfr13I | GGNCC | 5 cut(s) | 82, 221, 262, 281, 338 |
| DpnI | GATC | 2 cut(s) | 60, 546 |
| DpnII | GATC | 2 cut(s) | 58, 544 |
| Eam1104I | CTCTTC | 2 cut(s) | 284, 648 |
| EarI | CTCTTC | 2 cut(s) | 284, 648 |
| Eco130I | CCWWGG | 1 cut(s) | 440 |
| Eco47I | GGWCC | 3 cut(s) | 82, 221, 262 |
| EcoRII | CCWGG | 1 cut(s) | 470 |
| EcoT14I | CCWWGG | 1 cut(s) | 440 |
| ErhI | CCWWGG | 1 cut(s) | 440 |
| FaiI | YATR | 5 cut(s) | 113, 121, 189, 463, 575 |
| FauI | CCCGC | 1 cut(s) | 56 |
| Fnu4HI | GCNGC | 3 cut(s) | 45, 284, 299 |
| FokI | GGATG | 4 cut(s) | 253, 568, 581, 661 |
| Fsp4HI | GCNGC | 3 cut(s) | 45, 284, 299 |
| FspBI | CTAG | 1 cut(s) | 552 |
| GlaI | GCGC | 1 cut(s) | 631 |
| GluI | GCNGC | 3 cut(s) | 45, 284, 299 |
| HaeII | RGCGCY | 1 cut(s) | 633 |
| HaeIII | GGCC | 4 cut(s) | 251, 283, 340, 509 |
| HapII | CCGG | 1 cut(s) | 319 |
| HhaI | GCGC | 1 cut(s) | 632 |
| Hin6I | GCGC | 1 cut(s) | 630 |
| HinP1I | GCGC | 1 cut(s) | 630 |
| HincII | GTYRAC | 1 cut(s) | 202 |
| HindII | GTYRAC | 1 cut(s) | 202 |
| HinfI | GANTC | 3 cut(s) | 16, 386, 482 |
| HpaII | CCGG | 1 cut(s) | 319 |
| HphI | GGTGA | 2 cut(s) | 515, 670 |
| Hpy166II | GTNNAC | 3 cut(s) | 108, 202, 262 |
| Hpy188I | TCNGA | 2 cut(s) | 86, 648 |
| Hpy188III | TCNNGA | 2 cut(s) | 56, 596 |
| Hpy8I | GTNNAC | 3 cut(s) | 108, 202, 262 |
| HpyAV | CCTTC | 4 cut(s) | 211, 272, 385, 439 |
| HpyCH4III | ACNGT | 2 cut(s) | 143, 503 |
| HpyCH4IV | ACGT | 3 cut(s) | 33, 534, 636 |
| HpyCH4V | TGCA | 2 cut(s) | 397, 467 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 350, 638 |
| HpySE526I | ACGT | 3 cut(s) | 33, 534, 636 |
| HspAI | GCGC | 1 cut(s) | 630 |
| Kzo9I | GATC | 2 cut(s) | 58, 544 |
| LguI | GCTCTTC | 2 cut(s) | 284, 648 |
| LpnPI | CCDG | 4 cut(s) | 332, 354, 457, 484 |
| LweI | GCATC | 1 cut(s) | 77 |
| MaeI | CTAG | 1 cut(s) | 552 |
| MaeII | ACGT | 3 cut(s) | 33, 534, 636 |
| MaeIII | GTNAC | 2 cut(s) | 143, 164 |
| MalI | GATC | 2 cut(s) | 60, 546 |
| MboI | GATC | 2 cut(s) | 58, 544 |
| MboII | GAAGA | 8 cut(s) | 40, 127, 226, 244, 301, 416, 635, 673 |
| MhlI | GDGCHC | 1 cut(s) | 296 |
| MluCI | AATT | 1 cut(s) | 521 |
| MlyI | GAGTC | 1 cut(s) | 25 |
| MmeI | TCCRAC | 2 cut(s) | 437, 477 |
| MroXI | GAANNNNTTC | 1 cut(s) | 408 |
| MspI | CCGG | 1 cut(s) | 319 |
| MspR9I | CCNGG | 2 cut(s) | 320, 472 |
| MvaI | CCWGG | 1 cut(s) | 472 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 350, 638 |
| NciI | CCSGG | 1 cut(s) | 320 |
| NdeII | GATC | 2 cut(s) | 58, 544 |
| NlaIV | GGNNCC | 3 cut(s) | 83, 222, 264 |
| NmeAIII | GCCGAG | 1 cut(s) | 116 |
| PciSI | GCTCTTC | 2 cut(s) | 284, 648 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 456, 507 |
| PdmI | GAANNNNTTC | 1 cut(s) | 408 |
| PfeI | GAWTC | 2 cut(s) | 386, 482 |
| PkrI | GCNGC | 3 cut(s) | 46, 285, 300 |
| PleI | GAGTC | 1 cut(s) | 24 |
| PpsI | GAGTC | 1 cut(s) | 24 |
| Ppu21I | YACGTR | 1 cut(s) | 637 |
| Psp1406I | AACGTT | 2 cut(s) | 33, 534 |
| Psp6I | CCWGG | 1 cut(s) | 470 |
| PspGI | CCWGG | 1 cut(s) | 470 |
| PspN4I | GGNNCC | 3 cut(s) | 83, 222, 264 |
| PspPI | GGNCC | 5 cut(s) | 82, 221, 262, 281, 338 |
| SapI | GCTCTTC | 2 cut(s) | 284, 648 |
| SatI | GCNGC | 3 cut(s) | 45, 284, 299 |
| Sau3AI | GATC | 2 cut(s) | 58, 544 |
| Sau96I | GGNCC | 5 cut(s) | 82, 221, 262, 281, 338 |
| SchI | GAGTC | 1 cut(s) | 25 |
| ScrFI | CCNGG | 2 cut(s) | 320, 472 |
| SduI | GDGCHC | 1 cut(s) | 296 |
| SetI | ASST | 7 cut(s) | 36, 137, 207, 396, 450, 537, 639 |
| SfaNI | GCATC | 1 cut(s) | 77 |
| SinI | GGWCC | 3 cut(s) | 82, 221, 262 |
| Sse9I | AATT | 1 cut(s) | 521 |
| SsiI | CCGC | 4 cut(s) | 45, 49, 284, 299 |
| SspMI | CTAG | 1 cut(s) | 552 |
| StyD4I | CCNGG | 2 cut(s) | 318, 470 |
| StyI | CCWWGG | 1 cut(s) | 440 |
| TaaI | ACNGT | 2 cut(s) | 143, 503 |
| TaiI | ACGT | 3 cut(s) | 36, 537, 639 |
| TaqI | TCGA | 4 cut(s) | 57, 207, 389, 595 |
| TasI | AATT | 1 cut(s) | 521 |
| TauI | GCSGC | 3 cut(s) | 47, 286, 301 |
| TfiI | GAWTC | 2 cut(s) | 386, 482 |
| TspDTI | ATGAA | 7 cut(s) | 111, 128, 291, 417, 572, 576, 627 |
| TspGWI | ACGGA | 3 cut(s) | 141, 244, 669 |
| VpaK11BI | GGWCC | 3 cut(s) | 82, 221, 262 |
| XmnI | GAANNNNTTC | 1 cut(s) | 408 |
| XspI | CTAG | 1 cut(s) | 552 |