Rroxscaffold_1G00004760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015772
Physical Location & Seq
Reverse (-)
6519600 .. 6521481
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004760.1

Sequence Viewer

Length: 360 bp
ATGAACTGGTGGATTGATGATGTAGAAGAAGGATTCAATATTAGTGAAGATGAGGATGATGAAGGGCCTCCGATTGTGGACCTATCGGATGATGAAGGGCCGATTGATGTGGATGGGCCGCCCAGCCTCAGCCTATGCATATGCCTCCCCAACCGAGCCTATGCTTCCCAAACTGCTGCTGTGCAACCCCAATCTCATAGTGACCAAGGGCCCCAAGTGGATTATATGGCTACCCAAAAGAGTCCCCGCCTACATCATCTGCCCCAAAAGGAGGATCCCAGCCCCGAGTTCGAGCTAGAAGGTTTAAATCCCTTGCTCATAGGAGACCCAAGCCTAAAAATGCACCCCCAAGCCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.15

Weight (kDa)

4.07

Isoelectric Point (pI)

63.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 119, 247
AclWI GGATC 2 cut(s) 269, 282
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 2 cut(s) 269, 282
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 4 cut(s) 65, 98, 116, 209
ApaI GGGCCC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 176
AspS9I GGNCC 6 cut(s) 65, 79, 98, 116, 209, 210
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 213
BamHI GGATCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 213
BbvCI CCTCAGC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 163
BccI CCATC 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 296
BisI GCNGC 2 cut(s) 119, 177
BlsI GCNGC 2 cut(s) 120, 178
Bme18I GGWCC 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 6 cut(s) 65, 79, 98, 116, 209, 210
BmiI GGNNCC 3 cut(s) 211, 212, 276
Bpu10I CCTNAGC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 3 cut(s) 61, 94, 118
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 1 cut(s) 163
BseYI CCCAGC 2 cut(s) 122, 278
BshFI GGCC 4 cut(s) 67, 100, 118, 211
BsiHKCI CYCGRG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 4 cut(s) 67, 100, 118, 211
Bso31I GGTCTC 1 cut(s) 318
BsoBI CYCGRG 1 cut(s) 284
Bsp120I GGGCCC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 2 cut(s) 119, 247
BspANI GGCC 4 cut(s) 67, 100, 118, 211
BspCNI CTCAG 1 cut(s) 141
BspLI GGNNCC 3 cut(s) 211, 212, 276
BspPI GGATC 2 cut(s) 269, 282
BspTNI GGTCTC 1 cut(s) 318
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 3 cut(s) 61, 94, 118
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 1 cut(s) 274
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 4 cut(s) 67, 100, 118, 211
BtsCI GGATG 3 cut(s) 61, 94, 118
Cfr13I GGNCC 6 cut(s) 65, 79, 98, 116, 209, 210
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DraI TTTAAA 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 284
EcoO109I RGGNCCY 3 cut(s) 65, 209, 210
EcoT14I CCWWGG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 205
FaiI YATR 8 cut(s) 136, 140, 142, 162, 198, 225, 227, 320
FaqI GGGAC 1 cut(s) 228
FauI CCCGC 1 cut(s) 254
FauNDI CATATG 1 cut(s) 140
Fnu4HI GCNGC 2 cut(s) 119, 177
FokI GGATG 3 cut(s) 68, 101, 125
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 119, 177
FspBI CTAG 1 cut(s) 296
GluI GCNGC 2 cut(s) 119, 177
GsaI CCCAGC 2 cut(s) 126, 282
HaeIII GGCC 4 cut(s) 67, 100, 118, 211
HinfI GANTC 2 cut(s) 33, 241
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 72, 88
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 4 cut(s) 23, 56, 89, 293
HpyCH4V TGCA 3 cut(s) 138, 184, 343
HpyF3I CTNAG 1 cut(s) 128
Kzo9I GATC 1 cut(s) 274
LpnPI CCDG 2 cut(s) 136, 292
Lsp1109I GCAGC 1 cut(s) 163
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 2 cut(s) 38, 59
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 213
MlyI GAGTC 1 cut(s) 250
MnlI CCTC 5 cut(s) 46, 78, 137, 155, 265
Mph1103I ATGCAT 1 cut(s) 140
MseI TTAA 1 cut(s) 305
NdeI CATATG 1 cut(s) 140
NdeII GATC 1 cut(s) 274
NlaIV GGNNCC 3 cut(s) 211, 212, 276
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 140
PfeI GAWTC 1 cut(s) 33
PkrI GCNGC 2 cut(s) 120, 178
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PspFI CCCAGC 2 cut(s) 122, 278
PspN4I GGNNCC 3 cut(s) 211, 212, 276
PspOMI GGGCCC 1 cut(s) 209
PspPI GGNCC 6 cut(s) 65, 79, 98, 116, 209, 210
PsuI RGATCY 1 cut(s) 274
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 2 cut(s) 119, 177
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 6 cut(s) 65, 79, 98, 116, 209, 210
SchI GAGTC 1 cut(s) 250
SduI GDGCHC 1 cut(s) 213
SetI ASST 3 cut(s) 84, 297, 304
SinI GGWCC 1 cut(s) 79
SsiI CCGC 2 cut(s) 119, 247
SspI AATATT 1 cut(s) 40
SspMI CTAG 1 cut(s) 296
StyI CCWWGG 1 cut(s) 205
TaqI TCGA 1 cut(s) 291
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 1 cut(s) 33
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 3 cut(s) 17, 75, 108
VpaK11BI GGWCC 1 cut(s) 79
XspI CTAG 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.