Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015772

Physical Location & Seq

Genomic Coordinates Forward (+)

17958929 .. 17975068

Gene Structure 16140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGAATGGGATGATATGGGCTTTCGGGGGAACATTTCGAGAGGACAATGGGAATGAAAGTGATAAGTTTGGCGCTTACGTGGCTCTTCGGATGATAAGGCTACACAATTTGAATAGTCACCCAATGAAAATGTACAAGCCTAACCTCGCCGAGAATGCGAAGCCCAACCTTAGCCTATGTATATGCCTCCCCGGCCCGCAGCCTATGCCTTCCCAAACTCGCGACCCCGTGCAGCCCCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

9.07

Weight (kDa)

8.74

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015772)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011729 RLG00000014626 RLG00000021567 RLG00000030167 RLG00000036677
rosa_roxburghii	Rroxscaffold_1G00004760 Rroxscaffold_2G00085340 Rroxscaffold_7G00171820 Rroxscaffold_7G00178220 Rroxscaffold_7G00178230
rosa_samantha	Rh2AG422800 Rh5DG541800 Rh6AG097700 Rh6BG378200 Rh6CG056100 Rh6CG383800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	222
AciI	CCGC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	112
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	2 cut(s)	199, 232
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	192
BisI	GCNGC	2 cut(s)	200, 233
BlsI	GCNGC	2 cut(s)	201, 234
Bme1390I	CCNGG	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	15, 96
BseXI	GCAGC	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	195
Bsp1407I	TGTACA	1 cut(s)	132
Bsp68I	TCGCGA	1 cut(s)	222
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	222
BspQI	GCTCTTC	1 cut(s)	90
BsrGI	TGTACA	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	205
BstAUI	TGTACA	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	15, 96
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 155, 192, 205
BstSCI	CCNGG	1 cut(s)	190
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	15, 96
BtuMI	TCGCGA	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	197
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	133
CviJI	RGCY	9 cut(s)	20, 83, 100, 139, 163, 174, 195, 202, 235
CviKI_1	RGCY	9 cut(s)	20, 83, 100, 139, 163, 174, 195, 202, 235
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
FaiI	YATR	5 cut(s)	16, 178, 182, 184, 206
FauI	CCCGC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	200, 233
FokI	GGATG	2 cut(s)	22, 103
Fsp4HI	GCNGC	2 cut(s)	200, 233
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	200, 233
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	1 cut(s)	74
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	2 cut(s)	38, 221
HpyAV	CCTTC	1 cut(s)	219
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 155, 192, 205
HpyF3I	CTNAG	1 cut(s)	170
HpySE526I	ACGT	1 cut(s)	78
HspAI	GCGC	1 cut(s)	72
LguI	GCTCTTC	1 cut(s)	90
LpnPI	CCDG	1 cut(s)	205
Lsp1109I	GCAGC	1 cut(s)	211
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	116
MboII	GAAGA	1 cut(s)	77
MluCI	AATT	1 cut(s)	106
MnlI	CCTC	3 cut(s)	34, 155, 197
MseI	TTAA	1 cut(s)	244
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	160
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	4 cut(s)	80, 155, 192, 205
NciI	CCSGG	1 cut(s)	192
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	116
NruI	TCGCGA	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	90
PctI	GAATGC	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	201, 234
Ppu21I	YACGTR	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	194
RruI	TCGCGA	1 cut(s)	222
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	244
SatI	GCNGC	2 cut(s)	200, 233
Sau96I	GGNCC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	192
SetI	ASST	3 cut(s)	81, 147, 171
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	190
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	1 cut(s)	37
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	244
Tru9I	TTAA	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	2 cut(s)	199, 232
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	17, 69, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.