Rh6AG097700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015772
Physical Location & Seq
Reverse (-)
14374297 .. 14387127
12831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG097700.1

Sequence Viewer

Length: 225 bp
ATGCAAGCTGGAACTGTGATTGCCATTAAGGAGTTGGCGACATTGATCAAGTTTCGTATTGAACAGATTGTAAACGAGGCACTTGCTGAGAATGTACAAGCCCAACCTGTTGATAATGCAGATGCCCAGCCTCAGCTTGAGCATATGCCTTCCCAGCCTGCTGACCCTGTGCAGCCCCAATCACAGAGTGACCAGGGGCCCCAAGTGGATTATGTGGCTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.02

Weight (kDa)

4.1

Isoelectric Point (pI)

56.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 188
AfaI GTAC 1 cut(s) 96
AgsI TTSAA 1 cut(s) 62
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 2 cut(s) 8, 136
AluI AGCT 2 cut(s) 8, 136
AoxI GGCC 1 cut(s) 197
ApaI GGGCCC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 197, 198
BaeGI GKGCMC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 201
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 1 cut(s) 194
BclI TGATCA 1 cut(s) 45
BfaI CTAG 1 cut(s) 223
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 197, 198
BmiI GGNNCC 3 cut(s) 198, 199, 200
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 193
BseMII CTCAG 2 cut(s) 78, 146
BseSI GKGCMC 1 cut(s) 201
BseXI GCAGC 1 cut(s) 184
BseYI CCCAGC 2 cut(s) 126, 153
BsgI GTGCAG 1 cut(s) 191
BshFI GGCC 1 cut(s) 199
BsnI GGCC 1 cut(s) 199
Bsp120I GGGCCC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 94
Bsp143I GATC 1 cut(s) 45
BspANI GGCC 1 cut(s) 199
BspCNI CTCAG 2 cut(s) 79, 145
BspLI GGNNCC 3 cut(s) 198, 199, 200
BsrGI TGTACA 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 16
BstAUI TGTACA 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 6, 159
BstDEI CTNAG 2 cut(s) 87, 132
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 184
BsuRI GGCC 1 cut(s) 199
Cac8I GCNNGC 2 cut(s) 6, 159
Cfr13I GGNCC 2 cut(s) 197, 198
Csp6I GTAC 1 cut(s) 95
CviJI RGCY 8 cut(s) 8, 101, 130, 136, 157, 175, 199, 218
CviKI_1 RGCY 8 cut(s) 8, 101, 130, 136, 157, 175, 199, 218
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 2 cut(s) 87, 132
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
DraIII CACNNNGTG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 201
EcoO109I RGGNCCY 2 cut(s) 197, 198
EcoRII CCWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 201
FaiI YATR 3 cut(s) 144, 146, 213
FauNDI CATATG 1 cut(s) 144
FbaI TGATCA 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 173
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 173
FspBI CTAG 1 cut(s) 223
GluI GCNGC 1 cut(s) 173
GsaI CCCAGC 2 cut(s) 130, 157
HaeIII GGCC 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 3 cut(s) 4, 119, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 2 cut(s) 87, 132
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 7 cut(s) 120, 140, 167, 171, 179, 180, 206
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 188
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 201
MnlI CCTC 2 cut(s) 70, 141
MseI TTAA 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 154
NdeI CATATG 1 cut(s) 144
NdeII GATC 1 cut(s) 45
NlaIV GGNNCC 3 cut(s) 198, 199, 200
NmuCI GTSAC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 192
PspFI CCCAGC 2 cut(s) 126, 153
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 3 cut(s) 198, 199, 200
PspOMI GGGCCC 1 cut(s) 197
PspPI GGNCC 2 cut(s) 197, 198
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 2 cut(s) 197, 198
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 201
SetI ASST 4 cut(s) 10, 109, 138, 224
SfaNI GCATC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SspMI CTAG 1 cut(s) 223
StyD4I CCNGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 16
TatI WGTACW 1 cut(s) 94
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XspI CTAG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.