Rroxscaffold_7G00178220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015772
Physical Location & Seq
Forward (+)
17955975 .. 17958606
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00178220.1

Sequence Viewer

Length: 360 bp
ATGTCGGAATTGAGGTGGTTGAGGAGGTTAAATGAATTAGGTTTAGGGTTTATGGCTGGGTTGGTAGGGAATTTAAATCCCAGCAATTTTGGGGTTTATGGTAGTCAAAGGGGAAAGTTTAAGAAGGGTCCATTAGTGAAGATGAGGATGATGACGGCCTCCGTTGTGGACCCGACGGATGATGAAGGGCCGGCCGAAGAGCACGCCGCAGAGGACAATGATGTTCCGGGTATGGATAATGGCCCAATGTTTGATGATGGGCCGGGGAATGTGGATGAGCCATGTAAGGATGATGGGCCAAACAACCATAATGGCCCAAGGTCCGATGATAGGTTAGGATTGTTGATGGGCCAGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.88

Weight (kDa)

4.57

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 207
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 330
Alw21I GWGCWC 1 cut(s) 204
AoxI GGCC 8 cut(s) 156, 188, 192, 241, 260, 296, 313, 349
ApoI RAATTY 1 cut(s) 70
AspS9I GGNCC 9 cut(s) 128, 169, 188, 242, 260, 296, 314, 321, 349
AsuC2I CCSGG 2 cut(s) 228, 264
AvaII GGWCC 3 cut(s) 128, 169, 321
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 3 cut(s) 251, 287, 340
BceAI ACGGC 2 cut(s) 171, 340
BcnI CCSGG 2 cut(s) 228, 264
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 2 cut(s) 228, 264
Bme18I GGWCC 3 cut(s) 128, 169, 321
BmgT120I GGNCC 9 cut(s) 128, 169, 188, 242, 260, 296, 314, 321, 349
BmiI GGNNCC 2 cut(s) 129, 171
BmrFI CCNGG 2 cut(s) 228, 264
BpuMI CCSGG 2 cut(s) 228, 264
BsaJI CCNNGG 2 cut(s) 263, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 330
Bse118I RCCGGY 1 cut(s) 190
BseDI CCNNGG 2 cut(s) 263, 317
BseGI GGATG 4 cut(s) 153, 184, 280, 295
BseLI CCNNNNNNNGG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 37
BseX3I CGGCCG 1 cut(s) 192
BseYI CCCAGC 2 cut(s) 56, 80
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 8 cut(s) 158, 190, 194, 243, 262, 298, 315, 351
BsiEI CGRYCG 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 3 cut(s) 191, 227, 263
BslI CCNNNNNNNGG 1 cut(s) 330
BsnI GGCC 8 cut(s) 158, 190, 194, 243, 262, 298, 315, 351
Bsp1286I GDGCHC 1 cut(s) 204
BspACI CCGC 1 cut(s) 207
BspANI GGCC 8 cut(s) 158, 190, 194, 243, 262, 298, 315, 351
BspLI GGNNCC 2 cut(s) 129, 171
BspQI GCTCTTC 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 263, 317
BssT1I CCWWGG 1 cut(s) 317
Bst6I CTCTTC 1 cut(s) 192
BstC8I GCNNGC 3 cut(s) 192, 204, 353
BstF5I GGATG 4 cut(s) 153, 184, 280, 295
BstMCI CGRYCG 1 cut(s) 195
BstSCI CCNGG 2 cut(s) 226, 262
BstZI CGGCCG 1 cut(s) 192
BsuRI GGCC 8 cut(s) 158, 190, 194, 243, 262, 298, 315, 351
BtsCI GGATG 4 cut(s) 153, 184, 280, 295
Cac8I GCNNGC 3 cut(s) 192, 204, 353
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 9 cut(s) 128, 169, 188, 242, 260, 296, 314, 321, 349
CviAII CATG 1 cut(s) 282
DraI TTTAAA 1 cut(s) 75
EaeI YGGCCR 1 cut(s) 192
EagI CGGCCG 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
EclXI CGGCCG 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 317
Eco47I GGWCC 3 cut(s) 128, 169, 321
Eco52I CGGCCG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 1 cut(s) 285
FaiI YATR 5 cut(s) 53, 99, 233, 283, 309
FatI CATG 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 4 cut(s) 160, 191, 287, 302
FseI GGCCGGCC 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 207
GsaI CCCAGC 2 cut(s) 60, 84
HaeIII GGCC 8 cut(s) 158, 190, 194, 243, 262, 298, 315, 351
HapII CCGG 3 cut(s) 191, 227, 263
Hin1II CATG 1 cut(s) 285
HpaII CCGG 3 cut(s) 191, 227, 263
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 7, 325
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 2 cut(s) 118, 179
Hsp92II CATG 1 cut(s) 285
KroI GCCGGC 1 cut(s) 190
KroNI GCCGGC 1 cut(s) 192
LguI GCTCTTC 1 cut(s) 192
LpnPI CCDG 5 cut(s) 42, 94, 204, 240, 276
MboII GAAGA 2 cut(s) 151, 209
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 4 cut(s) 8, 35, 70, 85
MnlI CCTC 6 cut(s) 6, 15, 18, 138, 169, 205
MroNI GCCGGC 1 cut(s) 190
MseI TTAA 3 cut(s) 29, 74, 120
MspI CCGG 3 cut(s) 191, 227, 263
MspR9I CCNGG 2 cut(s) 228, 264
NaeI GCCGGC 1 cut(s) 192
NciI CCSGG 2 cut(s) 228, 264
NgoMIV GCCGGC 1 cut(s) 190
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 2 cut(s) 129, 171
PciSI GCTCTTC 1 cut(s) 192
PdiI GCCGGC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 208
PspFI CCCAGC 2 cut(s) 56, 80
PspN4I GGNNCC 2 cut(s) 129, 171
PspPI GGNCC 9 cut(s) 128, 169, 188, 242, 260, 296, 314, 321, 349
RigI GGCCGGCC 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 3 cut(s) 29, 74, 120
SatI GCNGC 1 cut(s) 207
Sau96I GGNCC 9 cut(s) 128, 169, 188, 242, 260, 296, 314, 321, 349
ScrFI CCNGG 2 cut(s) 228, 264
SduI GDGCHC 1 cut(s) 204
SetI ASST 5 cut(s) 17, 29, 43, 323, 335
SinI GGWCC 3 cut(s) 128, 169, 321
SmiI ATTTAAAT 1 cut(s) 75
Sse9I AATT 4 cut(s) 8, 35, 70, 85
SsiI CCGC 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 226, 262
StyI CCWWGG 1 cut(s) 317
SwaI ATTTAAAT 1 cut(s) 75
TasI AATT 4 cut(s) 8, 35, 70, 85
TauI GCSGC 1 cut(s) 209
Tru1I TTAA 3 cut(s) 29, 74, 120
Tru9I TTAA 3 cut(s) 29, 74, 120
TspDTI ATGAA 2 cut(s) 48, 198
TspGWI ACGGA 2 cut(s) 151, 191
VpaK11BI GGWCC 3 cut(s) 128, 169, 321
XapI RAATTY 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.