Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005435

Physical Location & Seq

Genomic Coordinates Reverse (-)

54660601 .. 54661205

Gene Structure 605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014558

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCGCACGGATCCCCAACTCTAATCATCGATGAGACCATACCTGCACGAAAGTTCCTCCAATCTTGGAAGCAAAACGGTTTCCCCCAGAAACCCAACTCTATCCTCACCATCTCTACCCACTGGGAAGCCTCCGTCCCCATATTCAACTCTATTGTTGGCCTAAACGACACCATCTACTACTTCTATAGCTTTCCCAACTCCCTGTACAAGCTCAACGTTGTTGTGGACAACAAGCGCGGCCTCAACCACGGTGACTGGGTACCACTCAAGTTCATGTATCCGGAGGCAGACATCCTGGAGGTGGGTGTTCTTATGGTGGGGTCGGGGAGTGCAGTTCACAACTTGAGGGAGCTGAGGTGGAACACGGAGGCTTTGACTCAAGGAAGATATAAAGATGTGAACCATTATGAGAAGAAGGCTCCCACATGCAAAAACGGCTCATCCTTCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00965 map00965

Pfam Domains

Protein Families

LigB

Protein Analysis

152

Amino Acids

17.15

Weight (kDa)

8.65

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15093
fragaria_vesca	FvH4_1g23880
malus_domestica	MD00G1165300.v1.1 MD15G1340700.v1.1
prunus_persica	Prupe.6G161400_v2.0.a1
pyrus_communis	pycom15g30030
rosa_chinensis	RchiOBHm_Chr2g0119801 RchiOBHm_Chr2g0119841 RchiOBHm_Chr6g0259111 RchiOBHm_Chr6g0259131
rosa_laevigata	RLG00000014556 RLG00000014558 RLG00000018494 RLG00000018495
rosa_multiflora	Rmu_sc0001501.1_g000043
rosa_roxburghii	Rroxscaffold_2G00124060
rosa_rugosa	Rorug02G0223900 Rorug02G0224100
rosa_samantha	Rh2AG281600 Rh2AG281900 Rh2BG293200 Rh2BG293300 Rh2DG288000 Rh2DG288200 Rh2DG307300 Rh6AG102000 Rh6BG094200 Rh6CG091400
rosa_wichuraiana	Rw2G022510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	52
Acc65I	GGTACC	1 cut(s)	262
AccB1I	GGYRCC	1 cut(s)	262
AccII	CGCG	1 cut(s)	240
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	1 cut(s)	240
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	2 cut(s)	6, 19
AfaI	GTAC	2 cut(s)	209, 264
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	3 cut(s)	192, 214, 355
AluI	AGCT	3 cut(s)	192, 214, 355
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	2 cut(s)	6, 19
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	2 cut(s)	160, 241
Asp718I	GGTACC	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	240
AsuHPI	GGTGA	3 cut(s)	100, 266, 442
BamHI	GGATCC	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	262
BbvCI	CCTCAGC	1 cut(s)	356
BccI	CCATC	2 cut(s)	119, 182
BceAI	ACGGC	1 cut(s)	454
BciT130I	CCWGG	1 cut(s)	299
BciVI	GTATCC	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	187
BfuAI	ACCTGC	1 cut(s)	52
BfuI	GTATCC	1 cut(s)	291
BisI	GCNGC	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	299
BmiI	GGNNCC	3 cut(s)	13, 264, 423
BmrFI	CCNGG	1 cut(s)	299
BmrI	ACTGGG	2 cut(s)	133, 268
BmuI	ACTGGG	2 cut(s)	133, 268
BpmI	CTGGAG	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	356
BpuEI	CTTGAG	3 cut(s)	254, 366, 367
Bsa29I	ATCGAT	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	283
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	2 cut(s)	128, 263
BseAI	TCCGGA	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	299
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	2 cut(s)	294, 443
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	347
BseNI	ACTGG	2 cut(s)	128, 263
BsgI	GTGCAG	2 cut(s)	30, 354
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	2 cut(s)	162, 243
BshNI	GGYRCC	1 cut(s)	262
BshVI	ATCGAT	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	162, 243
Bso31I	GGTCTC	1 cut(s)	29
Bsp13I	TCCGGA	1 cut(s)	283
Bsp1407I	TGTACA	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	2 cut(s)	162, 243
BspCNI	CTCAG	1 cut(s)	348
BspDI	ATCGAT	1 cut(s)	30
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	3 cut(s)	13, 264, 423
BspMI	ACCTGC	1 cut(s)	52
BspPI	GGATC	2 cut(s)	6, 19
BspT107I	GGYRCC	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	128, 263
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	2 cut(s)	80, 254
BstAUI	TGTACA	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	356
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	294, 443
BstFNI	CGCG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	1 cut(s)	438
BstNI	CCWGG	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	297
BstSFI	CTRYAG	1 cut(s)	187
BstUI	CGCG	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
Bsu15I	ATCGAT	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	162, 243
BsuTUI	ATCGAT	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	294, 443
BtsIMutI	CAGTG	1 cut(s)	121
BveI	ACCTGC	1 cut(s)	52
CfoI	GCGC	1 cut(s)	240
ClaI	ATCGAT	1 cut(s)	30
Csp6I	GTAC	2 cut(s)	208, 263
CviAII	CATG	2 cut(s)	277, 429
CviJI	RGCY	9 cut(s)	131, 162, 192, 214, 243, 355, 374, 422, 441
CviKI_1	RGCY	9 cut(s)	131, 162, 192, 214, 243, 355, 374, 422, 441
CviQI	GTAC	2 cut(s)	208, 263
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	280, 432
FaiI	YATR	8 cut(s)	41, 143, 189, 278, 317, 393, 411, 430
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	2 cut(s)	276, 428
Fnu4HI	GCNGC	1 cut(s)	241
FokI	GGATG	2 cut(s)	281, 430
Fsp4HI	GCNGC	1 cut(s)	241
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	241
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	2 cut(s)	162, 243
HapII	CCGG	1 cut(s)	284
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	280, 432
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	3 cut(s)	100, 266, 442
Hpy166II	GTNNAC	3 cut(s)	229, 340, 403
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	3 cut(s)	229, 340, 403
HpyAV	CCTTC	1 cut(s)	412
HpyCH4III	ACNGT	2 cut(s)	80, 254
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	47, 335, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	438
HpyF3I	CTNAG	1 cut(s)	356
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	280, 432
HspAI	GCGC	1 cut(s)	238
Kpn2I	TCCGGA	1 cut(s)	283
KpnI	GGTACC	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	2 cut(s)	352, 427
LpnPI	CCDG	8 cut(s)	57, 101, 109, 218, 244, 284, 297, 311
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	2 cut(s)	399, 427
MflI	RGATCY	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	9 cut(s)	68, 116, 142, 254, 280, 295, 342, 351, 364
MroI	TCCGGA	1 cut(s)	283
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	438
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	280, 432
NlaIV	GGNNCC	3 cut(s)	13, 264, 423
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	1 cut(s)	432
PfoI	TCCNGGA	1 cut(s)	297
PkrI	GCNGC	1 cut(s)	242
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Psp1406I	AACGTT	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	3 cut(s)	13, 264, 423
PsuI	RGATCY	1 cut(s)	11
RsaI	GTAC	2 cut(s)	209, 264
RsaNI	GTAC	2 cut(s)	208, 263
SatI	GCNGC	1 cut(s)	241
Sau3AI	GATC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	299
SetI	ASST	8 cut(s)	46, 194, 216, 222, 306, 357, 362, 455
SfcI	CTRYAG	1 cut(s)	187
SmlI	CTYRAG	3 cut(s)	269, 346, 381
SmoI	CTYRAG	3 cut(s)	269, 346, 381
SsiI	CCGC	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	80, 254
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	30
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	1 cut(s)	243
TscAI	CASTG	1 cut(s)	128
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	265
TspGWI	ACGGA	3 cut(s)	24, 124, 383
TspRI	CASTG	1 cut(s)	128
XceI	RCATGY	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.