RLG00000018495

4,5-DOPA dioxygenase extradiol-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005435
Physical Location & Seq
Reverse (-)
30782315 .. 30782808
494 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018495

Sequence Viewer

Length: 417 bp
ATGTACAAGCTCAAGTACCTTGCCCCAGAGTCACCCCAACTAGCCACCCGAGTCAAGGATCTTCTCACCACCGTTGGAGTCCCAAGCATTGACGTGGACAACAAGTGCGACCTCGACTATGGTGTCGGGGTCCCACTTATGTTCATGTACCCAGAGGCAGACATCTTGGAGGAGGGTGTTCTTATTGAGGGGTTGGGGAGTGCAGTTCACAACGTGAGGGAGCTGAAGCAGAACATGGTGGATAGGCCCCTACCGCCATGGGTGTTAGAGTTTCATACTTGGCTTAAGGAGGCTTTGACTCAAGGAAGATATGAAGATGTGAACTATTATGAGAAGAAGGCTTTGCATGCAAAAATGGCTCATCCTTCATTTGATCATTCCTACCCTCTGAATGTGGCAATGGGGGCTCATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00965 map00965
Pfam Domains
Protein Families
LigB

Protein Analysis

139

Amino Acids

15.64

Weight (kDa)

5.43

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LigB PF02900 1 - 51 2.1e-06 Catalytic LigB subunit of aromatic ring-opening dioxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AciI CCGC 1 cut(s) 254
AclWI GGATC 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 214
AfaI GTAC 3 cut(s) 5, 17, 149
AfiI CCNNNNNNNGG 1 cut(s) 55
AflII CTTAAG 1 cut(s) 284
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 2 cut(s) 10, 223
AluI AGCT 2 cut(s) 10, 223
AlwI GGATC 1 cut(s) 66
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 1 cut(s) 245
AspS9I GGNCC 2 cut(s) 130, 246
AsuHPI GGTGA 2 cut(s) 24, 58
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 409
BclI TGATCA 1 cut(s) 373
BfaI CTAG 1 cut(s) 41
BfrI CTTAAG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 48
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 130, 246
BmiI GGNNCC 3 cut(s) 131, 132, 248
BpuEI CTTGAG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse3DI GCAATG 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 1 cut(s) 405
BseRI GAGGAG 1 cut(s) 185
BsgI GTGCAG 1 cut(s) 222
BshFI GGCC 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 48
BslFI GGGAC 2 cut(s) 65, 116
BslI CCNNNNNNNGG 1 cut(s) 55
BsmFI GGGAC 2 cut(s) 65, 116
BsnI GGCC 1 cut(s) 247
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 409
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 58, 373
Bsp19I CCATGG 1 cut(s) 257
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 247
BspLI GGNNCC 3 cut(s) 131, 132, 248
BspPI GGATC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 405
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 2 cut(s) 58, 373
BssT1I CCWWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 73
BstAFI CTTAAG 1 cut(s) 284
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 348
BstDSI CCRYGG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 2 cut(s) 61, 376
BstMBI GATC 2 cut(s) 58, 373
BstMWI GCNNNNNNNGC 4 cut(s) 253, 347, 356, 404
BstNSI RCATGY 1 cut(s) 350
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 247
BtgI CCRYGG 1 cut(s) 257
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 348
Cfr13I GGNCC 2 cut(s) 130, 246
Csp6I GTAC 3 cut(s) 4, 16, 148
CviAII CATG 5 cut(s) 145, 235, 258, 347, 414
CviJI RGCY 9 cut(s) 10, 44, 223, 247, 283, 293, 341, 359, 407
CviKI_1 RGCY 9 cut(s) 10, 44, 223, 247, 283, 293, 341, 359, 407
CviQI GTAC 3 cut(s) 4, 16, 148
DpnI GATC 2 cut(s) 60, 375
DpnII GATC 2 cut(s) 58, 373
DraIII CACNNNGTG 1 cut(s) 214
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 245
Eco88I CYCGRG 1 cut(s) 48
EcoO109I RGGNCCY 2 cut(s) 130, 246
EcoT14I CCWWGG 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 5 cut(s) 148, 238, 261, 350, 417
FaqI GGGAC 2 cut(s) 65, 116
FatI CATG 5 cut(s) 144, 234, 257, 346, 413
FbaI TGATCA 1 cut(s) 373
FokI GGATG 1 cut(s) 348
FriOI GRGCYC 1 cut(s) 409
FspBI CTAG 1 cut(s) 41
HaeIII GGCC 1 cut(s) 247
Hin1II CATG 5 cut(s) 148, 238, 261, 350, 417
HinfI GANTC 4 cut(s) 29, 51, 78, 298
HphI GGTGA 2 cut(s) 24, 58
Hpy166II GTNNAC 3 cut(s) 97, 208, 322
Hpy188I TCNGA 1 cut(s) 390
Hpy8I GTNNAC 3 cut(s) 97, 208, 322
HpyAV CCTTC 2 cut(s) 331, 375
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 2 cut(s) 93, 213
HpyCH4V TGCA 3 cut(s) 203, 346, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 253, 347, 356, 404
HpySE526I ACGT 2 cut(s) 93, 213
Hsp92II CATG 5 cut(s) 148, 238, 261, 350, 417
KflI GGGWCCC 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 2 cut(s) 58, 373
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 2 cut(s) 39, 165
MaeI CTAG 1 cut(s) 41
MaeII ACGT 2 cut(s) 93, 213
MaeIII GTNAC 1 cut(s) 30
MalI GATC 2 cut(s) 60, 375
MboI GATC 2 cut(s) 58, 373
MboII GAAGA 4 cut(s) 53, 318, 326, 346
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 409
MlyI GAGTC 4 cut(s) 38, 60, 87, 292
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 8 cut(s) 122, 148, 163, 166, 181, 210, 283, 396
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 92
MspCI CTTAAG 1 cut(s) 284
MwoI GCNNNNNNNGC 4 cut(s) 253, 347, 356, 404
NcoI CCATGG 1 cut(s) 257
NdeII GATC 2 cut(s) 58, 373
NlaIII CATG 5 cut(s) 148, 238, 261, 350, 417
NlaIV GGNNCC 3 cut(s) 131, 132, 248
NmuCI GTSAC 1 cut(s) 30
NspI RCATGY 1 cut(s) 350
PaeI GCATGC 1 cut(s) 350
PleI GAGTC 4 cut(s) 37, 59, 86, 292
PpsI GAGTC 4 cut(s) 37, 59, 86, 292
PpuMI RGGWCCY 1 cut(s) 130
Psp5II RGGWCCY 1 cut(s) 130
PspN4I GGNNCC 3 cut(s) 131, 132, 248
PspPI GGNCC 2 cut(s) 130, 246
PspPPI RGGWCCY 1 cut(s) 130
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 3 cut(s) 5, 17, 149
RsaNI GTAC 3 cut(s) 4, 16, 148
RseI CAYNNNNRTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 285
Sau3AI GATC 2 cut(s) 58, 373
Sau96I GGNCC 2 cut(s) 130, 246
SchI GAGTC 4 cut(s) 38, 60, 87, 292
SduI GDGCHC 1 cut(s) 409
SetI ASST 6 cut(s) 12, 21, 96, 114, 216, 225
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 3 cut(s) 11, 284, 300
SmoI CTYRAG 3 cut(s) 11, 284, 300
SphI GCATGC 1 cut(s) 350
SsiI CCGC 1 cut(s) 254
SspMI CTAG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 2 cut(s) 96, 216
TaqI TCGA 1 cut(s) 114
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 4 cut(s) 133, 263, 327, 357
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 130
XceI RCATGY 1 cut(s) 350
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.