Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005944

Physical Location & Seq

Genomic Coordinates Reverse (-)

26501417 .. 26501959

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023647

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCGGTCTCTGAGGAGGAGTGTTCCTCCTCCAACTCCAGATCATCCTCGTCCTCCACCTCTAACACCTCTCACTACCTCTCCAAGTGCCTCCTCCGTTGCACCGTCGTTCTCCACGTCCTCCACGGTCACATCCGCTTCCCCAACTCCTGCGACATTGTTTTCTTCAAGGAGAAATCGATAGAGTTGGTGATAATTGGTGAAGATGGGATTGTACAGTCTATGTGTGAGCAGCCTGTGTTTGGCACCATTAAACGAGTTTCCGAACCCGAAACCACCAGGTGTCTAGCTCAATTCAACAAGTTTCAGCCTTTTGTTTCGAGAATTAACTATTACATTGAGAAGAATAAATTTTGTACGCTTGTTGGTGTAGATGCCGGGCAAGGATCTTTTGGTGGTTGTTTCGGATTCCGGGAAGCTCTCGGTTCTATCTGTCTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

148

Amino Acids

16.28

Weight (kDa)

6.87

Isoelectric Point (pI)

75.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	37 - 86	8.3e-07	RSE1/DDB1/CPSF1 first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005944)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023647 RLG00000023653 RLG00000023665
rosa_multiflora	Rmu_sc0000968.1_g000012 Rmu_sc0001262.1_g000012 Rmu_sc0001518.1_g000014 Rmu_sc0002766.1_g000007 Rmu_sc0003078.1_g000002 Rmu_sc0005657.1_g000062 Rmu_sc0005657.1_g000063 Rmu_sc0012126.1_g000001 Rmu_sc0030925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108950 Rroxscaffold_6G00403400
rosa_rugosa	Rorug01G0021800 Rorug01G0146300.1 Rorug03G0358800.1 Rorug05G0241400 Rorug07G0101300
rosa_samantha	Rh1AG149600 Rh1BG381400 Rh1CG140700 Rh1CG395300 Rh3AG216500 Rh3AG217400 Rh3BG249600 Rh3CG245900 Rh6DG353100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AciI	CCGC	2 cut(s)	5, 136
AclWI	GGATC	1 cut(s)	394
AcsI	RAATTY	1 cut(s)	350
AdeI	CACNNNGTG	1 cut(s)	282
AfaI	GTAC	2 cut(s)	216, 358
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	169, 298
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	2 cut(s)	290, 419
AluI	AGCT	2 cut(s)	290, 419
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	350
AsuC2I	CCSGG	2 cut(s)	379, 413
AsuHPI	GGTGA	2 cut(s)	202, 212
BanI	GGYRCC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	280
BcnI	CCSGG	2 cut(s)	379, 413
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	287
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme1390I	CCNGG	3 cut(s)	280, 379, 413
BmgBI	CACGTC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	3 cut(s)	280, 379, 413
BmsI	GCATC	1 cut(s)	364
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	1 cut(s)	22
BpuMI	CCSGG	2 cut(s)	379, 413
Bsa29I	ATCGAT	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	280
BseCI	ATCGAT	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	2 cut(s)	44, 132
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseRI	GAGGAG	4 cut(s)	19, 29, 32, 83
BseXI	GCAGC	1 cut(s)	244
BshNI	GGYRCC	1 cut(s)	245
BshVI	ATCGAT	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	378, 412
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	1 cut(s)	13
Bso31I	GGTCTC	1 cut(s)	13
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	41, 386
BspACI	CCGC	2 cut(s)	5, 136
BspCNI	CTCAG	1 cut(s)	4
BspDI	ATCGAT	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	394
BspT107I	GGYRCC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	13
BsrGI	TGTACA	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	41, 386
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	3 cut(s)	106, 128, 219
BstAUI	TGTACA	1 cut(s)	214
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	44, 132
BstKTI	GATC	2 cut(s)	44, 389
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	2 cut(s)	41, 386
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	3 cut(s)	278, 377, 411
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
Bsu15I	ATCGAT	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	124
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	44, 132
ClaI	ATCGAT	1 cut(s)	179
CsiI	ACCWGGT	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	215, 357
CviJI	RGCY	4 cut(s)	235, 290, 310, 419
CviKI_1	RGCY	4 cut(s)	235, 290, 310, 419
CviQI	GTAC	2 cut(s)	215, 357
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	2 cut(s)	43, 388
DpnII	GATC	2 cut(s)	41, 386
DraIII	CACNNNGTG	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	278
FaiI	YATR	1 cut(s)	224
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	2 cut(s)	31, 119
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	1 cut(s)	233
GsuI	CTGGAG	1 cut(s)	22
HapII	CCGG	2 cut(s)	378, 412
HinfI	GANTC	1 cut(s)	408
HpaII	CCGG	2 cut(s)	378, 412
HphI	GGTGA	2 cut(s)	202, 212
Hpy188I	TCNGA	3 cut(s)	13, 265, 407
Hpy188III	TCNNGA	2 cut(s)	39, 321
Hpy99I	CGWCG	1 cut(s)	110
HpyCH4III	ACNGT	3 cut(s)	106, 128, 219
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	102, 439
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	41, 386
LpnPI	CCDG	7 cut(s)	52, 163, 249, 265, 292, 391, 425
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	364
MabI	ACCWGGT	1 cut(s)	278
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	43, 388
MboI	GATC	2 cut(s)	41, 386
MboII	GAAGA	3 cut(s)	157, 215, 355
MflI	RGATCY	1 cut(s)	386
MluCI	AATT	4 cut(s)	195, 293, 324, 350
MmeI	TCCRAC	1 cut(s)	57
MseI	TTAA	2 cut(s)	252, 327
MspI	CCGG	2 cut(s)	378, 412
MspR9I	CCNGG	3 cut(s)	280, 379, 413
MvaI	CCWGG	1 cut(s)	280
NciI	CCSGG	2 cut(s)	379, 413
NdeII	GATC	2 cut(s)	41, 386
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	408
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	386
RsaI	GTAC	2 cut(s)	216, 358
RsaNI	GTAC	2 cut(s)	215, 357
SaqAI	TTAA	2 cut(s)	252, 327
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	2 cut(s)	41, 386
ScrFI	CCNGG	3 cut(s)	280, 379, 413
SetI	ASST	7 cut(s)	62, 71, 81, 120, 284, 292, 421
SexAI	ACCWGGT	1 cut(s)	278
SfaNI	GCATC	1 cut(s)	364
Sse9I	AATT	4 cut(s)	195, 293, 324, 350
SsiI	CCGC	2 cut(s)	5, 136
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	3 cut(s)	278, 377, 411
TaaI	ACNGT	3 cut(s)	106, 128, 219
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	179, 320
TasI	AATT	4 cut(s)	195, 293, 324, 350
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	408
Tru1I	TTAA	2 cut(s)	252, 327
Tru9I	TTAA	2 cut(s)	252, 327
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	128
TspGWI	ACGGA	1 cut(s)	86
XapI	RAATTY	1 cut(s)	350
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.