Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012126.1

Orthogroup ID

OG0005944

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 794

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012126.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 436 bp

agctccaccgcagctcctccgccatgggacgcgtccgcaccaagaccgtgaagaagtcctcctggcaggtgatcgagcggtactgctcgcgcatgaccctcgacttccacaccaacaagaaggtcctggaggatctgcaaaaatcccgtcgaagcgcctccgcaacaagatcgccggattctcgacccatctcatgaagcgcatccagaagggccccgtctgcgtcatctccctcaagctccaggaggaggagagcgagcgccgcaaggactttgtccccgacgagtccgccatgaagaccgacgagatcgccgtcgacaaggtgaccctcgacatgctcactgctctcggcatggcggatattcccggagtcaagaaggtggatccctctgatctccagactgcgccgatctggtacggccccaggaggtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

144

Amino Acids

16.07

Weight (kDa)

9.1

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005944)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023647 RLG00000023653 RLG00000023665
rosa_multiflora	Rmu_sc0000968.1_g000012 Rmu_sc0001262.1_g000012 Rmu_sc0001518.1_g000014 Rmu_sc0002766.1_g000007 Rmu_sc0003078.1_g000002 Rmu_sc0005657.1_g000062 Rmu_sc0005657.1_g000063 Rmu_sc0012126.1_g000001 Rmu_sc0030925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108950 Rroxscaffold_6G00403400
rosa_rugosa	Rorug01G0021800 Rorug01G0146300.1 Rorug03G0358800.1 Rorug05G0241400 Rorug07G0101300
rosa_samantha	Rh1AG149600 Rh1BG381400 Rh1CG140700 Rh1CG395300 Rh3AG216500 Rh3AG217400 Rh3BG249600 Rh3CG245900 Rh6DG353100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	57
Acc36I	ACCTGC	1 cut(s)	57
AccBSI	CCGCTC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	316
AccII	CGCG	2 cut(s)	32, 90
AciI	CCGC	8 cut(s)	9, 20, 36, 78, 161, 263, 289, 357
AclWI	GGATC	3 cut(s)	140, 378, 391
AfaI	GTAC	3 cut(s)	82, 417, 432
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	30
AjnI	CCWGG	4 cut(s)	61, 125, 241, 423
AluBI	AGCT	3 cut(s)	3, 14, 239
AluI	AGCT	3 cut(s)	3, 14, 239
AlwI	GGATC	3 cut(s)	140, 378, 391
AoxI	GGCC	2 cut(s)	212, 419
ApaI	GGGCCC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	11
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AspLEI	GCGC	5 cut(s)	92, 157, 202, 262, 407
AspS9I	GGNCC	4 cut(s)	123, 212, 213, 420
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	81, 335
AvaII	GGWCC	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	2 cut(s)	297, 434
BcgI	CGANNNNNNTGC	4 cut(s)	81, 115, 152, 186
BciT130I	CCWGG	4 cut(s)	63, 127, 243, 425
BcnI	CCSGG	1 cut(s)	367
BfaI	CTAG	1 cut(s)	434
BfoI	RGCGCY	2 cut(s)	158, 263
BfuAI	ACCTGC	1 cut(s)	57
BisI	GCNGC	2 cut(s)	12, 263
BlsI	GCNGC	2 cut(s)	13, 264
Bme1390I	CCNGG	5 cut(s)	63, 127, 243, 367, 425
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	4 cut(s)	123, 212, 213, 420
BmiI	GGNNCC	4 cut(s)	214, 215, 385, 422
BmrFI	CCNGG	5 cut(s)	63, 127, 243, 367, 425
BmsI	GCATC	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	303
BpmI	CTGGAG	3 cut(s)	148, 225, 381
BpuEI	CTTGAG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	23, 423
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
BseBI	CCWGG	4 cut(s)	63, 127, 243, 425
BseDI	CCNNGG	2 cut(s)	23, 423
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseRI	GAGGAG	3 cut(s)	6, 261, 264
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	23
Bsh1236I	CGCG	2 cut(s)	32, 90
BshFI	GGCC	2 cut(s)	214, 421
BsiSI	CCGG	2 cut(s)	175, 367
BslFI	GGGAC	2 cut(s)	41, 261
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmFI	GGGAC	2 cut(s)	41, 261
BsnI	GGCC	2 cut(s)	214, 421
Bsp120I	GGGCCC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	7 cut(s)	71, 132, 169, 307, 383, 392, 409
Bsp19I	CCATGG	1 cut(s)	23
BspACI	CCGC	8 cut(s)	9, 20, 36, 78, 161, 263, 289, 357
BspANI	GGCC	2 cut(s)	214, 421
BspFNI	CGCG	2 cut(s)	32, 90
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	4 cut(s)	214, 215, 385, 422
BspMI	ACCTGC	1 cut(s)	57
BspPI	GGATC	3 cut(s)	140, 378, 391
BsrBI	CCGCTC	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	23, 423
BssMI	GATC	7 cut(s)	71, 132, 169, 307, 383, 392, 409
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	4 cut(s)	63, 127, 243, 425
Bst4CI	ACNGT	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	88, 258
BstDSI	CCRYGG	1 cut(s)	23
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	2 cut(s)	32, 90
BstH2I	RGCGCY	2 cut(s)	158, 263
BstHHI	GCGC	5 cut(s)	92, 157, 202, 262, 407
BstKTI	GATC	7 cut(s)	74, 135, 172, 310, 386, 395, 412
BstMBI	GATC	7 cut(s)	71, 132, 169, 307, 383, 392, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 262
BstNI	CCWGG	4 cut(s)	63, 127, 243, 425
BstNSI	RCATGY	1 cut(s)	338
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	5 cut(s)	61, 125, 241, 365, 423
BstSLI	GKGCMC	1 cut(s)	216
BstUI	CGCG	2 cut(s)	32, 90
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	2 cut(s)	132, 383
BstYI	RGATCY	2 cut(s)	132, 383
BsuRI	GGCC	2 cut(s)	214, 421
BtgI	CCRYGG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	88, 258
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	5 cut(s)	92, 157, 202, 262, 407
Cfr13I	GGNCC	4 cut(s)	123, 212, 213, 420
CseI	GACGC	3 cut(s)	21, 38, 212
Csp6I	GTAC	3 cut(s)	81, 416, 431
CviAII	CATG	6 cut(s)	24, 93, 194, 293, 335, 353
CviJI	RGCY	5 cut(s)	3, 14, 214, 239, 421
CviKI_1	RGCY	5 cut(s)	3, 14, 214, 239, 421
CviQI	GTAC	3 cut(s)	81, 416, 431
DpnI	GATC	7 cut(s)	73, 134, 171, 309, 385, 394, 411
DpnII	GATC	7 cut(s)	71, 132, 169, 307, 383, 392, 409
EciI	GGCGGA	3 cut(s)	9, 278, 372
Eco130I	CCWWGG	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	123
Eco91I	GGTNACC	1 cut(s)	323
EcoO109I	RGGNCCY	3 cut(s)	123, 212, 213
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	4 cut(s)	61, 125, 241, 423
EcoT14I	CCWWGG	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	6 cut(s)	27, 96, 197, 296, 338, 356
FaiI	YATR	6 cut(s)	25, 94, 195, 294, 336, 354
FaqI	GGGAC	2 cut(s)	41, 261
FatI	CATG	6 cut(s)	23, 92, 193, 292, 334, 352
FblI	GTMKAC	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	12, 263
FokI	GGATG	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	12, 263
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	5 cut(s)	91, 156, 201, 261, 406
GluI	GCNGC	2 cut(s)	12, 263
GsuI	CTGGAG	3 cut(s)	148, 225, 381
HaeII	RGCGCY	2 cut(s)	158, 263
HaeIII	GGCC	2 cut(s)	214, 421
HapII	CCGG	2 cut(s)	175, 367
HgaI	GACGC	3 cut(s)	21, 38, 212
HhaI	GCGC	5 cut(s)	92, 157, 202, 262, 407
Hin1II	CATG	6 cut(s)	27, 96, 197, 296, 338, 356
Hin6I	GCGC	5 cut(s)	90, 155, 200, 260, 405
HinP1I	GCGC	5 cut(s)	90, 155, 200, 260, 405
HincII	GTYRAC	1 cut(s)	317
HindII	GTYRAC	1 cut(s)	317
HinfI	GANTC	3 cut(s)	178, 285, 370
HpaII	CCGG	2 cut(s)	175, 367
HphI	GGTGA	2 cut(s)	81, 335
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	392
Hpy188III	TCNNGA	5 cut(s)	182, 194, 206, 374, 398
Hpy8I	GTNNAC	1 cut(s)	317
Hpy99I	CGWCG	4 cut(s)	152, 285, 306, 318
HpyAV	CCTTC	3 cut(s)	114, 203, 371
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 262
Hsp92II	CATG	6 cut(s)	27, 96, 197, 296, 338, 356
HspAI	GCGC	5 cut(s)	90, 155, 200, 260, 405
Kzo9I	GATC	7 cut(s)	71, 132, 169, 307, 383, 392, 409
LmnI	GCTCC	3 cut(s)	8, 19, 244
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	7 cut(s)	73, 134, 171, 309, 385, 394, 411
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	7 cut(s)	71, 132, 169, 307, 383, 392, 409
MboII	GAAGA	2 cut(s)	63, 308
MflI	RGATCY	2 cut(s)	132, 383
MhlI	GDGCHC	1 cut(s)	216
MluI	ACGCGT	1 cut(s)	30
MlyI	GAGTC	2 cut(s)	294, 379
MspI	CCGG	2 cut(s)	175, 367
MspR9I	CCNGG	5 cut(s)	63, 127, 243, 367, 425
MvaI	CCWGG	4 cut(s)	63, 127, 243, 425
MvnI	CGCG	2 cut(s)	32, 90
MwoI	GCNNNNNNNGC	2 cut(s)	220, 262
NciI	CCSGG	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	23
NdeII	GATC	7 cut(s)	71, 132, 169, 307, 383, 392, 409
NlaIII	CATG	6 cut(s)	27, 96, 197, 296, 338, 356
NlaIV	GGNNCC	4 cut(s)	214, 215, 385, 422
NmeAIII	GCCGAG	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	323
NspI	RCATGY	1 cut(s)	338
PagI	TCATGA	1 cut(s)	193
PaqCI	CACCTGC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	178
PflFI	GACNNNGTC	1 cut(s)	273
PfoI	TCCNGGA	3 cut(s)	125, 241, 365
PkrI	GCNGC	2 cut(s)	13, 264
PleI	GAGTC	2 cut(s)	293, 378
PpsI	GAGTC	2 cut(s)	293, 378
PpuMI	RGGWCCY	1 cut(s)	123
Psp5II	RGGWCCY	1 cut(s)	123
Psp6I	CCWGG	4 cut(s)	61, 125, 241, 423
PspEI	GGTNACC	1 cut(s)	323
PspGI	CCWGG	4 cut(s)	61, 125, 241, 423
PspN4I	GGNNCC	4 cut(s)	214, 215, 385, 422
PspOMI	GGGCCC	1 cut(s)	212
PspPI	GGNCC	4 cut(s)	123, 212, 213, 420
PspPPI	RGGWCCY	1 cut(s)	123
PsuI	RGATCY	2 cut(s)	132, 383
PsyI	GACNNNGTC	1 cut(s)	273
RsaI	GTAC	3 cut(s)	82, 417, 432
RsaNI	GTAC	3 cut(s)	81, 416, 431
SalI	GTCGAC	1 cut(s)	315
SatI	GCNGC	2 cut(s)	12, 263
Sau3AI	GATC	7 cut(s)	71, 132, 169, 307, 383, 392, 409
Sau96I	GGNCC	4 cut(s)	123, 212, 213, 420
SchI	GAGTC	2 cut(s)	294, 379
ScrFI	CCNGG	5 cut(s)	63, 127, 243, 367, 425
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	7 cut(s)	16, 71, 125, 241, 325, 382, 432
SfaNI	GCATC	1 cut(s)	211
SinI	GGWCC	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
SsiI	CCGC	8 cut(s)	9, 20, 36, 78, 161, 263, 289, 357
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	5 cut(s)	61, 125, 241, 365, 423
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	48
TaqI	TCGA	6 cut(s)	74, 101, 150, 183, 316, 331
TaqII	GACCGA	1 cut(s)	315
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	178
TscAI	CASTG	1 cut(s)	347
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	210, 309
TspRI	CASTG	1 cut(s)	347
Tth111I	GACNNNGTC	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	123
XceI	RCATGY	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	316
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.