Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030925.1

Orthogroup ID

OG0005944

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 387

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030925.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 368 bp

atggcaggtgatcgagcggtactactcgcgcatgaccctcgacttccacaccaacaagaaagtcctggaggatctgcaaaaatcccgacgaagcgcctccgcaacaagatcgccggattctcgacctatctcatgaagcgcatccagaagagccccgtacgcgtcatctccctcaagctccaggaggaggagcgcgagcgccgcatggactttgtccccgacgagtccgccatgaagaccgacgagattgccgtcttcaaggtgaccctcgacatgctcactgctctcggcatggcggatattcctggagtcaagaaggtggatccctctgatctccagactgcgccgatcgggtacggccccaggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

122

Amino Acids

13.57

Weight (kDa)

9.52

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005944)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023647 RLG00000023653 RLG00000023665
rosa_multiflora	Rmu_sc0000968.1_g000012 Rmu_sc0001262.1_g000012 Rmu_sc0001518.1_g000014 Rmu_sc0002766.1_g000007 Rmu_sc0003078.1_g000002 Rmu_sc0005657.1_g000062 Rmu_sc0005657.1_g000063 Rmu_sc0012126.1_g000001 Rmu_sc0030925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108950 Rroxscaffold_6G00403400
rosa_rugosa	Rorug01G0021800 Rorug01G0146300.1 Rorug03G0358800.1 Rorug05G0241400 Rorug07G0101300
rosa_samantha	Rh1AG149600 Rh1BG381400 Rh1CG140700 Rh1CG395300 Rh3AG216500 Rh3AG217400 Rh3BG249600 Rh3CG245900 Rh6DG353100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	17
AccII	CGCG	3 cut(s)	29, 162, 195
AciI	CCGC	5 cut(s)	17, 100, 202, 228, 296
AclWI	GGATC	3 cut(s)	79, 317, 330
AfaI	GTAC	3 cut(s)	21, 159, 356
AfiI	CCNNNNNNNGG	1 cut(s)	187
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	4 cut(s)	64, 180, 304, 362
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
AlwI	GGATC	3 cut(s)	79, 317, 330
AoxI	GGCC	1 cut(s)	358
AspLEI	GCGC	6 cut(s)	31, 96, 141, 195, 201, 346
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	2 cut(s)	20, 274
BamHI	GGATCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	155
BbsI	GAAGAC	2 cut(s)	242, 247
BceAI	ACGGC	1 cut(s)	236
BcgI	CGANNNNNNTGC	6 cut(s)	20, 54, 91, 125, 230, 264
BciT130I	CCWGG	4 cut(s)	66, 182, 306, 364
BfoI	RGCGCY	2 cut(s)	97, 202
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	4 cut(s)	66, 182, 306, 364
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	2 cut(s)	324, 361
BmrFI	CCNGG	4 cut(s)	66, 182, 306, 364
BmsI	GCATC	1 cut(s)	150
BpiI	GAAGAC	2 cut(s)	242, 247
BpmI	CTGGAG	4 cut(s)	87, 164, 320, 327
BpuEI	CTTGAG	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
BseBI	CCWGG	4 cut(s)	66, 182, 306, 364
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseRI	GAGGAG	2 cut(s)	200, 203
Bsh1236I	CGCG	3 cut(s)	29, 162, 195
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	114
BsiWI	CGTACG	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	6 cut(s)	10, 71, 108, 322, 331, 348
BspACI	CCGC	5 cut(s)	17, 100, 202, 228, 296
BspANI	GGCC	1 cut(s)	360
BspFNI	CGCG	3 cut(s)	29, 162, 195
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	324, 361
BspPI	GGATC	3 cut(s)	79, 317, 330
BspQI	GCTCTTC	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	6 cut(s)	10, 71, 108, 322, 331, 348
Bst2UI	CCWGG	4 cut(s)	66, 182, 306, 364
Bst6I	CTCTTC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	197
BstEII	GGTNACC	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	3 cut(s)	29, 162, 195
BstH2I	RGCGCY	2 cut(s)	97, 202
BstHHI	GCGC	6 cut(s)	31, 96, 141, 195, 201, 346
BstKTI	GATC	6 cut(s)	13, 74, 111, 325, 334, 351
BstMBI	GATC	6 cut(s)	10, 71, 108, 322, 331, 348
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 201
BstNI	CCWGG	4 cut(s)	66, 182, 306, 364
BstNSI	RCATGY	1 cut(s)	277
BstPI	GGTNACC	1 cut(s)	262
BstSCI	CCNGG	4 cut(s)	64, 180, 304, 362
BstUI	CGCG	3 cut(s)	29, 162, 195
BstV2I	GAAGAC	2 cut(s)	242, 247
BstX2I	RGATCY	2 cut(s)	71, 322
BstYI	RGATCY	2 cut(s)	71, 322
BsuRI	GGCC	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	141
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	197
CciI	TCATGA	1 cut(s)	132
CfoI	GCGC	6 cut(s)	31, 96, 141, 195, 201, 346
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	20, 158, 355
CviAII	CATG	6 cut(s)	32, 133, 205, 232, 274, 292
CviJI	RGCY	3 cut(s)	153, 178, 360
CviKI_1	RGCY	3 cut(s)	153, 178, 360
CviQI	GTAC	3 cut(s)	20, 158, 355
DpnI	GATC	6 cut(s)	12, 73, 110, 324, 333, 350
DpnII	GATC	6 cut(s)	10, 71, 108, 322, 331, 348
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
EciI	GGCGGA	2 cut(s)	217, 311
Eco24I	GRGCYC	1 cut(s)	155
Eco91I	GGTNACC	1 cut(s)	262
EcoO65I	GGTNACC	1 cut(s)	262
EcoRII	CCWGG	4 cut(s)	64, 180, 304, 362
EcoT38I	GRGCYC	1 cut(s)	155
FaeI	CATG	6 cut(s)	35, 136, 208, 235, 277, 295
FaiI	YATR	6 cut(s)	33, 134, 206, 233, 275, 293
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	6 cut(s)	31, 132, 204, 231, 273, 291
Fnu4HI	GCNGC	1 cut(s)	202
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	202
GlaI	GCGC	6 cut(s)	30, 95, 140, 194, 200, 345
GluI	GCNGC	1 cut(s)	202
GsuI	CTGGAG	4 cut(s)	87, 164, 320, 327
HaeII	RGCGCY	2 cut(s)	97, 202
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	6 cut(s)	31, 96, 141, 195, 201, 346
Hin1II	CATG	6 cut(s)	35, 136, 208, 235, 277, 295
Hin6I	GCGC	6 cut(s)	29, 94, 139, 193, 199, 344
HinP1I	GCGC	6 cut(s)	29, 94, 139, 193, 199, 344
HinfI	GANTC	3 cut(s)	117, 224, 309
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	2 cut(s)	20, 274
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	6 cut(s)	85, 121, 133, 145, 313, 337
Hpy99I	CGWCG	3 cut(s)	91, 224, 245
HpyAV	CCTTC	1 cut(s)	310
HpyCH4V	TGCA	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 201
Hsp92II	CATG	6 cut(s)	35, 136, 208, 235, 277, 295
HspAI	GCGC	6 cut(s)	29, 94, 139, 193, 199, 344
Kzo9I	GATC	6 cut(s)	10, 71, 108, 322, 331, 348
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	2 cut(s)	183, 190
LweI	GCATC	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	6 cut(s)	12, 73, 110, 324, 333, 350
MbiI	CCGCTC	1 cut(s)	17
MboI	GATC	6 cut(s)	10, 71, 108, 322, 331, 348
MboII	GAAGA	3 cut(s)	160, 247, 247
MflI	RGATCY	2 cut(s)	71, 322
MhlI	GDGCHC	1 cut(s)	155
MluI	ACGCGT	1 cut(s)	160
MlyI	GAGTC	2 cut(s)	233, 318
MnlI	CCTC	8 cut(s)	48, 62, 107, 178, 181, 182, 278, 337
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	4 cut(s)	66, 182, 306, 364
MvaI	CCWGG	4 cut(s)	66, 182, 306, 364
MvnI	CGCG	3 cut(s)	29, 162, 195
MwoI	GCNNNNNNNGC	2 cut(s)	159, 201
NdeII	GATC	6 cut(s)	10, 71, 108, 322, 331, 348
NlaIII	CATG	6 cut(s)	35, 136, 208, 235, 277, 295
NlaIV	GGNNCC	2 cut(s)	324, 361
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	277
PagI	TCATGA	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	117
Pfl23II	CGTACG	1 cut(s)	157
PflFI	GACNNNGTC	1 cut(s)	212
PfoI	TCCNGGA	3 cut(s)	64, 180, 304
PkrI	GCNGC	1 cut(s)	203
Ple19I	CGATCG	1 cut(s)	351
PleI	GAGTC	2 cut(s)	232, 317
PpsI	GAGTC	2 cut(s)	232, 317
Psp6I	CCWGG	4 cut(s)	64, 180, 304, 362
PspEI	GGTNACC	1 cut(s)	262
PspGI	CCWGG	4 cut(s)	64, 180, 304, 362
PspLI	CGTACG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	324, 361
PspPI	GGNCC	1 cut(s)	359
PsuI	RGATCY	2 cut(s)	71, 322
PsyI	GACNNNGTC	1 cut(s)	212
PvuI	CGATCG	1 cut(s)	351
RsaI	GTAC	3 cut(s)	21, 159, 356
RsaNI	GTAC	3 cut(s)	20, 158, 355
SapI	GCTCTTC	1 cut(s)	143
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	6 cut(s)	10, 71, 108, 322, 331, 348
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	2 cut(s)	233, 318
ScrFI	CCNGG	4 cut(s)	66, 182, 306, 364
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	5 cut(s)	10, 128, 180, 264, 321
SfaNI	GCATC	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SsiI	CCGC	5 cut(s)	17, 100, 202, 228, 296
StyD4I	CCNGG	4 cut(s)	64, 180, 304, 362
TaqI	TCGA	4 cut(s)	13, 40, 122, 270
TaqII	GACCGA	1 cut(s)	254
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	117
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	149, 248
TspRI	CASTG	1 cut(s)	286
Tth111I	GACNNNGTC	1 cut(s)	212
XceI	RCATGY	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.