Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005944

Physical Location & Seq

Genomic Coordinates Reverse (-)

28145632 .. 28149082

Gene Structure 3451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG149600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCCACACACACACAGCCGTCCCTCTCCTCTCAAACCCTACCTCACGCGCACACACACAGAGCTCCACCGCAGCTGCTCCGCCATGGGACGAGTCCGCACCAAGACCGTGAAGAAGTCCTCCTGGCAGGTGATCGAGCGGTACTACTCGCGCATGACCCTCGACTTCCACACCAACAAGAAGGTCCTGGAGGATCTGCAAAAGTCCCGTCGAAGCGCCTCCGCAACAAGATCGCCGGATTCTCGACCCATCTCATGAAGCGCATCCAGAAGGGCCCCGTCCGCGTCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTTGTCCCCGACGAGTTCGCCATGAAGACCGACGAGATCGCAGTCGACAAGGTGACCCTCGACATGCTCACTGCTCTCGGCATGGCGGATATTCCCGGAGTCAAGAAGGTGGATCCCTCTGATCTCCAGACTGCGCCGATCGGGTACGGCCCCAGGAGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

165

Amino Acids

18.37

Weight (kDa)

9.52

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	67 - 149	2.4e-31	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005944)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023647 RLG00000023653 RLG00000023665
rosa_multiflora	Rmu_sc0000968.1_g000012 Rmu_sc0001262.1_g000012 Rmu_sc0001518.1_g000014 Rmu_sc0002766.1_g000007 Rmu_sc0003078.1_g000002 Rmu_sc0005657.1_g000062 Rmu_sc0005657.1_g000063 Rmu_sc0012126.1_g000001 Rmu_sc0030925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108950 Rroxscaffold_6G00403400
rosa_rugosa	Rorug01G0021800 Rorug01G0146300.1 Rorug03G0358800.1 Rorug05G0241400 Rorug07G0101300
rosa_samantha	Rh1AG149600 Rh1BG381400 Rh1CG140700 Rh1CG395300 Rh3AG216500 Rh3AG217400 Rh3BG249600 Rh3CG245900 Rh6DG353100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	119
AccBSI	CCGCTC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	378
AccII	CGCG	4 cut(s)	50, 152, 285, 318
AciI	CCGC	8 cut(s)	71, 82, 98, 140, 223, 283, 325, 419
AclWI	GGATC	3 cut(s)	202, 440, 453
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	144, 479, 494
AfiI	CCNNNNNNNGG	1 cut(s)	310
AjnI	CCWGG	4 cut(s)	123, 187, 303, 485
AluBI	AGCT	3 cut(s)	65, 76, 301
AluI	AGCT	3 cut(s)	65, 76, 301
Alw21I	GWGCWC	1 cut(s)	67
AlwI	GGATC	3 cut(s)	202, 440, 453
AoxI	GGCC	3 cut(s)	3, 274, 481
ApaI	GGGCCC	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	73, 76
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspLEI	GCGC	7 cut(s)	52, 154, 219, 264, 318, 324, 469
AspS9I	GGNCC	4 cut(s)	185, 274, 275, 482
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	2 cut(s)	143, 397
AvaII	GGWCC	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	445
BanII	GRGCYC	2 cut(s)	67, 278
BbsI	GAAGAC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	63, 85
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	2 cut(s)	4, 496
BcgI	CGANNNNNNTGC	4 cut(s)	143, 177, 214, 248
BciT130I	CCWGG	4 cut(s)	125, 189, 305, 487
BcnI	CCSGG	1 cut(s)	429
BfaI	CTAG	1 cut(s)	496
BfoI	RGCGCY	2 cut(s)	220, 325
BfuAI	ACCTGC	1 cut(s)	119
BisI	GCNGC	3 cut(s)	74, 77, 325
BlsI	GCNGC	3 cut(s)	75, 78, 326
Bme1390I	CCNGG	5 cut(s)	125, 189, 305, 429, 487
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	4 cut(s)	185, 274, 275, 482
BmiI	GGNNCC	4 cut(s)	276, 277, 447, 484
BmrFI	CCNGG	5 cut(s)	125, 189, 305, 429, 487
BmsI	GCATC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	365
BpmI	CTGGAG	3 cut(s)	210, 287, 443
BpuEI	CTTGAG	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	429
BsaJI	CCNNGG	2 cut(s)	85, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
BseBI	CCWGG	4 cut(s)	125, 189, 305, 487
BseDI	CCNNGG	2 cut(s)	85, 485
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseRI	GAGGAG	3 cut(s)	19, 323, 326
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	63, 85
Bsh1236I	CGCG	4 cut(s)	50, 152, 285, 318
Bsh1285I	CGRYCG	1 cut(s)	474
BshFI	GGCC	3 cut(s)	5, 276, 483
BsiEI	CGRYCG	1 cut(s)	474
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	237, 429
BslFI	GGGAC	4 cut(s)	7, 103, 191, 323
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmFI	GGGAC	4 cut(s)	7, 103, 191, 323
BsnI	GGCC	3 cut(s)	5, 276, 483
Bsp120I	GGGCCC	1 cut(s)	274
Bsp1286I	GDGCHC	2 cut(s)	67, 278
Bsp143I	GATC	7 cut(s)	133, 194, 231, 369, 445, 454, 471
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	8 cut(s)	71, 82, 98, 140, 223, 283, 325, 419
BspANI	GGCC	3 cut(s)	5, 276, 483
BspFNI	CGCG	4 cut(s)	50, 152, 285, 318
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	4 cut(s)	276, 277, 447, 484
BspMI	ACCTGC	1 cut(s)	119
BspPI	GGATC	3 cut(s)	202, 440, 453
BsrBI	CCGCTC	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	85, 485
BssMI	GATC	7 cut(s)	133, 194, 231, 369, 445, 454, 471
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	4 cut(s)	125, 189, 305, 487
Bst4CI	ACNGT	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	85
BstEII	GGTNACC	1 cut(s)	385
BstF5I	GGATG	1 cut(s)	264
BstFNI	CGCG	4 cut(s)	50, 152, 285, 318
BstH2I	RGCGCY	2 cut(s)	220, 325
BstHHI	GCGC	7 cut(s)	52, 154, 219, 264, 318, 324, 469
BstKTI	GATC	7 cut(s)	136, 197, 234, 372, 448, 457, 474
BstMBI	GATC	7 cut(s)	133, 194, 231, 369, 445, 454, 471
BstMCI	CGRYCG	1 cut(s)	474
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 324
BstNI	CCWGG	4 cut(s)	125, 189, 305, 487
BstNSI	RCATGY	1 cut(s)	400
BstPI	GGTNACC	1 cut(s)	385
BstSCI	CCNGG	5 cut(s)	123, 187, 303, 427, 485
BstSLI	GKGCMC	1 cut(s)	278
BstUI	CGCG	4 cut(s)	50, 152, 285, 318
BstV1I	GCAGC	2 cut(s)	63, 85
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	2 cut(s)	194, 445
BstYI	RGATCY	2 cut(s)	194, 445
BsuRI	GGCC	3 cut(s)	5, 276, 483
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	264
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	402
BveI	ACCTGC	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	320
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	7 cut(s)	52, 154, 219, 264, 318, 324, 469
Cfr13I	GGNCC	4 cut(s)	185, 274, 275, 482
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	3 cut(s)	143, 478, 493
CviAII	CATG	7 cut(s)	86, 155, 256, 328, 355, 397, 415
CviJI	RGCY	7 cut(s)	5, 19, 65, 76, 276, 301, 483
CviKI_1	RGCY	7 cut(s)	5, 19, 65, 76, 276, 301, 483
CviQI	GTAC	3 cut(s)	143, 478, 493
DpnI	GATC	7 cut(s)	135, 196, 233, 371, 447, 456, 473
DpnII	GATC	7 cut(s)	133, 194, 231, 369, 445, 454, 471
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	2 cut(s)	71, 434
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	85
Eco24I	GRGCYC	2 cut(s)	67, 278
Eco47I	GGWCC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	385
EcoICRI	GAGCTC	1 cut(s)	65
EcoO109I	RGGNCCY	3 cut(s)	185, 274, 275
EcoO65I	GGTNACC	1 cut(s)	385
EcoRII	CCWGG	4 cut(s)	123, 187, 303, 485
EcoT14I	CCWWGG	1 cut(s)	85
EcoT38I	GRGCYC	2 cut(s)	67, 278
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	7 cut(s)	89, 158, 259, 331, 358, 400, 418
FaiI	YATR	7 cut(s)	87, 156, 257, 329, 356, 398, 416
FaqI	GGGAC	4 cut(s)	7, 103, 191, 323
FatI	CATG	7 cut(s)	85, 154, 255, 327, 354, 396, 414
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	74, 77, 325
FokI	GGATG	1 cut(s)	251
FriOI	GRGCYC	2 cut(s)	67, 278
Fsp4HI	GCNGC	3 cut(s)	74, 77, 325
FspBI	CTAG	1 cut(s)	496
GlaI	GCGC	7 cut(s)	51, 153, 218, 263, 317, 323, 468
GluI	GCNGC	3 cut(s)	74, 77, 325
GsuI	CTGGAG	3 cut(s)	210, 287, 443
HaeII	RGCGCY	2 cut(s)	220, 325
HaeIII	GGCC	3 cut(s)	5, 276, 483
HapII	CCGG	2 cut(s)	237, 429
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	7 cut(s)	52, 154, 219, 264, 318, 324, 469
Hin1II	CATG	7 cut(s)	89, 158, 259, 331, 358, 400, 418
Hin6I	GCGC	7 cut(s)	50, 152, 217, 262, 316, 322, 467
HinP1I	GCGC	7 cut(s)	50, 152, 217, 262, 316, 322, 467
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	3 cut(s)	94, 240, 432
HpaII	CCGG	2 cut(s)	237, 429
HphI	GGTGA	2 cut(s)	143, 397
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	5 cut(s)	244, 256, 268, 436, 460
Hpy8I	GTNNAC	1 cut(s)	379
Hpy99I	CGWCG	3 cut(s)	214, 347, 368
HpyAV	CCTTC	3 cut(s)	176, 265, 433
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 324
Hsp92II	CATG	7 cut(s)	89, 158, 259, 331, 358, 400, 418
HspAI	GCGC	7 cut(s)	50, 152, 217, 262, 316, 322, 467
Kzo9I	GATC	7 cut(s)	133, 194, 231, 369, 445, 454, 471
LmnI	GCTCC	4 cut(s)	70, 84, 306, 313
Lsp1109I	GCAGC	2 cut(s)	63, 85
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	1 cut(s)	496
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	7 cut(s)	135, 196, 233, 371, 447, 456, 473
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	7 cut(s)	133, 194, 231, 369, 445, 454, 471
MboII	GAAGA	2 cut(s)	125, 370
MflI	RGATCY	2 cut(s)	194, 445
MhlI	GDGCHC	2 cut(s)	67, 278
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	103, 441
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	2 cut(s)	237, 429
MspR9I	CCNGG	5 cut(s)	125, 189, 305, 429, 487
MvaI	CCWGG	4 cut(s)	125, 189, 305, 487
MvnI	CGCG	4 cut(s)	50, 152, 285, 318
MwoI	GCNNNNNNNGC	2 cut(s)	282, 324
NciI	CCSGG	1 cut(s)	429
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	7 cut(s)	133, 194, 231, 369, 445, 454, 471
NlaIII	CATG	7 cut(s)	89, 158, 259, 331, 358, 400, 418
NlaIV	GGNNCC	4 cut(s)	276, 277, 447, 484
NmeAIII	GCCGAG	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	400
PagI	TCATGA	1 cut(s)	255
PaqCI	CACCTGC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	240
PflFI	GACNNNGTC	1 cut(s)	335
PfoI	TCCNGGA	3 cut(s)	187, 303, 427
PkrI	GCNGC	3 cut(s)	75, 78, 326
Ple19I	CGATCG	1 cut(s)	474
PleI	GAGTC	2 cut(s)	102, 440
PpsI	GAGTC	2 cut(s)	102, 440
PpuMI	RGGWCCY	1 cut(s)	185
Psp124BI	GAGCTC	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	185
Psp6I	CCWGG	4 cut(s)	123, 187, 303, 485
PspEI	GGTNACC	1 cut(s)	385
PspGI	CCWGG	4 cut(s)	123, 187, 303, 485
PspN4I	GGNNCC	4 cut(s)	276, 277, 447, 484
PspOMI	GGGCCC	1 cut(s)	274
PspPI	GGNCC	4 cut(s)	185, 274, 275, 482
PspPPI	RGGWCCY	1 cut(s)	185
PsuI	RGATCY	2 cut(s)	194, 445
PsyI	GACNNNGTC	1 cut(s)	335
PvuI	CGATCG	1 cut(s)	474
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	3 cut(s)	144, 479, 494
RsaNI	GTAC	3 cut(s)	143, 478, 493
SacI	GAGCTC	1 cut(s)	67
SalI	GTCGAC	1 cut(s)	377
SatI	GCNGC	3 cut(s)	74, 77, 325
Sau3AI	GATC	7 cut(s)	133, 194, 231, 369, 445, 454, 471
Sau96I	GGNCC	4 cut(s)	185, 274, 275, 482
SchI	GAGTC	2 cut(s)	103, 441
ScrFI	CCNGG	5 cut(s)	125, 189, 305, 429, 487
SduI	GDGCHC	2 cut(s)	67, 278
SetI	ASST	9 cut(s)	46, 67, 78, 133, 187, 303, 387, 444, 494
SfaNI	GCATC	1 cut(s)	273
SinI	GGWCC	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SsiI	CCGC	8 cut(s)	71, 82, 98, 140, 223, 283, 325, 419
SspMI	CTAG	1 cut(s)	496
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	5 cut(s)	123, 187, 303, 427, 485
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	6 cut(s)	136, 163, 212, 245, 378, 393
TaqII	GACCGA	1 cut(s)	377
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	240
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	2 cut(s)	73, 76
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	2 cut(s)	272, 371
TspRI	CASTG	1 cut(s)	409
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	185
XceI	RCATGY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.