Rmu_sc0005657.1_g000062

Pre-mRNA-splicing factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005657.1
Physical Location & Seq
Reverse (-)
338541 .. 341129
2589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005657.1_g000062.1.cds

Sequence Viewer

Length: 1020 bp
atggcggtctccgaggaggagtgttcctccgccaactctagatcatcgtcctcctccacctccagcacctctcactacctctccaagtgcctcctccgtggcaccgtcgttctccacgtcctccacagtcacatccgcttccccaactcccgcgacatcgttttcggcaaggagaaatcgatagagttggtgataatcggtgaagatgggatcgtacagtctgtgtgtgagcagcctgtgtttggcaccattaaagacattgtcgtcctaccttggaatgacggattccgaacccgaaaccgccagatgccgggcaaggatcttttggtcgttgtttcggattccgggaagctctcggttctttctttctgcaatgaaatgcacaggttttttcctgtgacacaagttcaactttctaatcctggaaacgcgaggaatcagcttgcaagaatgctagccattgattcaagtccaccacagaccacagtcaactcgtttctctctctcttttatccctttgacagccacacacacacagccctccctctcctctcaaaccctacatcacgcgcgcacacacatagagctccaccgcagctcctccgccatgggacgcgtccgcaccaagaccgtgaagaagtcctcctggcaggtgatcgagcggtactgctcgcgcatgaccctcgacttccacaccaacaagaaggtcctggaggatctgcaaaaatcccgtcgaagcgcctccgcaacaagatcgccggattctcgacccatctcatgaagcgcatccagaagggccccgtccgcgtcatctccctcaagctccaggaggaggagcgcgagcgccgcatggactttgtccccgacgagtccgccatgaagaccgacgagatcgccgtcgacaaggtgaccctcgacatgctcactgctctcggcaaggcggatattcctggagtcaagaaggtggatccctctgatctccagactgcgccgatctggtacggccccaggaggtactag

Protein Analysis

339

Amino Acids

37.76

Weight (kDa)

9.28

Isoelectric Point (pI)

53.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 641
AasI GACNNNNNNGTC 1 cut(s) 263
Acc36I ACCTGC 1 cut(s) 641
AccB1I GGYRCC 2 cut(s) 101, 245
AccBSI CCGCTC 1 cut(s) 662
AccI GTMKAC 1 cut(s) 900
AccII CGCG 8 cut(s) 153, 431, 570, 572, 616, 674, 807, 840
AclWI GGATC 5 cut(s) 218, 327, 724, 962, 975
AfaI GTAC 4 cut(s) 216, 666, 1001, 1016
AfiI CCNNNNNNNGG 3 cut(s) 242, 310, 832
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 2 cut(s) 410, 468
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 6 cut(s) 421, 645, 709, 825, 949, 1007
AluBI AGCT 5 cut(s) 352, 442, 587, 598, 823
AluI AGCT 5 cut(s) 352, 442, 587, 598, 823
Alw21I GWGCWC 1 cut(s) 589
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 5 cut(s) 218, 327, 724, 962, 975
AoxI GGCC 2 cut(s) 796, 1003
ApaI GGGCCC 1 cut(s) 800
ApeKI GCWGC 2 cut(s) 232, 595
ArsI GACNNNNNNTTYG 4 cut(s) 146, 178, 716, 748
AspLEI GCGC 8 cut(s) 572, 574, 676, 741, 786, 840, 846, 991
AspS9I GGNCC 4 cut(s) 707, 796, 797, 1004
AsuC2I CCSGG 2 cut(s) 312, 346
AsuHPI GGTGA 4 cut(s) 202, 212, 665, 919
AsuNHI GCTAGC 1 cut(s) 454
AvaII GGWCC 1 cut(s) 707
BaeGI GKGCMC 1 cut(s) 800
BamHI GGATCC 1 cut(s) 967
BanI GGYRCC 2 cut(s) 101, 245
BanII GRGCYC 2 cut(s) 589, 800
BbsI GAAGAC 1 cut(s) 887
Bbv12I GWGCWC 1 cut(s) 589
BbvI GCAGC 2 cut(s) 244, 607
BccI CCATC 2 cut(s) 200, 780
BceAI ACGGC 2 cut(s) 881, 1018
BcgI CGANNNNNNTGC 4 cut(s) 665, 699, 736, 770
BciT130I CCWGG 6 cut(s) 423, 647, 711, 827, 951, 1009
BcnI CCSGG 2 cut(s) 312, 346
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 3 cut(s) 39, 455, 1018
BfoI RGCGCY 2 cut(s) 742, 847
BfuAI ACCTGC 1 cut(s) 641
BisI GCNGC 3 cut(s) 233, 596, 847
BlsI GCNGC 3 cut(s) 234, 597, 848
Bme1390I CCNGG 8 cut(s) 312, 346, 423, 647, 711, 827, 951, 1009
Bme18I GGWCC 1 cut(s) 707
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 4 cut(s) 707, 796, 797, 1004
BmiI GGNNCC 6 cut(s) 103, 247, 798, 799, 969, 1006
BmrFI CCNGG 8 cut(s) 312, 346, 423, 647, 711, 827, 951, 1009
BmsI GCATC 2 cut(s) 297, 795
BmtI GCTAGC 1 cut(s) 458
BoxI GACNNNNGTC 1 cut(s) 485
BpiI GAAGAC 1 cut(s) 887
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpmI CTGGAG 5 cut(s) 46, 732, 809, 965, 972
BpuEI CTTGAG 1 cut(s) 803
BpuMI CCSGG 2 cut(s) 312, 346
Bsa29I ATCGAT 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 5 cut(s) 12, 97, 272, 607, 1007
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 582, 612
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 310, 832
Bse3DI GCAATG 1 cut(s) 379
BseBI CCWGG 6 cut(s) 423, 647, 711, 827, 951, 1009
BseCI ATCGAT 1 cut(s) 179
BseDI CCNNGG 5 cut(s) 12, 97, 272, 607, 1007
BseGI GGATG 2 cut(s) 132, 786
BseLI CCNNNNNNNGG 3 cut(s) 242, 310, 832
BseMI GCAATG 1 cut(s) 379
BsePI GCGCGC 1 cut(s) 570
BseRI GAGGAG 8 cut(s) 29, 32, 43, 83, 539, 590, 845, 848
BseSI GKGCMC 1 cut(s) 800
BseXI GCAGC 2 cut(s) 244, 607
Bsh1236I CGCG 8 cut(s) 153, 431, 570, 572, 616, 674, 807, 840
BshFI GGCC 2 cut(s) 798, 1005
BshNI GGYRCC 2 cut(s) 101, 245
BshVI ATCGAT 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 589
BsiSI CCGG 3 cut(s) 311, 345, 759
BslFI GGGAC 2 cut(s) 625, 845
BslI CCNNNNNNNGG 3 cut(s) 242, 310, 832
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 2 cut(s) 625, 845
BsmI GAATGC 1 cut(s) 456
BsnI GGCC 2 cut(s) 798, 1005
Bso31I GGTCTC 1 cut(s) 13
Bsp120I GGGCCC 1 cut(s) 796
Bsp1286I GDGCHC 2 cut(s) 589, 800
Bsp19I CCATGG 1 cut(s) 607
BspANI GGCC 2 cut(s) 798, 1005
BspDI ATCGAT 1 cut(s) 179
BspFNI CGCG 8 cut(s) 153, 431, 570, 572, 616, 674, 807, 840
BspHI TCATGA 1 cut(s) 777
BspLI GGNNCC 6 cut(s) 103, 247, 798, 799, 969, 1006
BspMI ACCTGC 1 cut(s) 641
BspOI GCTAGC 1 cut(s) 458
BspPI GGATC 5 cut(s) 218, 327, 724, 962, 975
BspT107I GGYRCC 2 cut(s) 101, 245
BspTNI GGTCTC 1 cut(s) 13
BsrBI CCGCTC 1 cut(s) 662
BsrDI GCAATG 1 cut(s) 379
BssECI CCNNGG 5 cut(s) 12, 97, 272, 607, 1007
BssHII GCGCGC 1 cut(s) 570
BssT1I CCWWGG 2 cut(s) 272, 607
Bst2UI CCWGG 6 cut(s) 423, 647, 711, 827, 951, 1009
Bst4CI ACNGT 5 cut(s) 106, 128, 219, 487, 632
BstC8I GCNNGC 5 cut(s) 444, 456, 572, 672, 842
BstDSI CCRYGG 2 cut(s) 97, 607
BstEII GGTNACC 1 cut(s) 907
BstF5I GGATG 2 cut(s) 132, 786
BstFNI CGCG 8 cut(s) 153, 431, 570, 572, 616, 674, 807, 840
BstH2I RGCGCY 2 cut(s) 742, 847
BstHHI GCGC 8 cut(s) 572, 574, 676, 741, 786, 840, 846, 991
BstMAI GTCTC 1 cut(s) 13
BstMWI GCNNNNNNNGC 2 cut(s) 804, 846
BstNI CCWGG 6 cut(s) 423, 647, 711, 827, 951, 1009
BstNSI RCATGY 1 cut(s) 922
BstPAI GACNNNNGTC 1 cut(s) 485
BstPI GGTNACC 1 cut(s) 907
BstSCI CCNGG 8 cut(s) 310, 344, 421, 645, 709, 825, 949, 1007
BstSLI GKGCMC 1 cut(s) 800
BstUI CGCG 8 cut(s) 153, 431, 570, 572, 616, 674, 807, 840
BstV1I GCAGC 2 cut(s) 244, 607
BstV2I GAAGAC 1 cut(s) 887
BstX2I RGATCY 3 cut(s) 319, 716, 967
BstYI RGATCY 3 cut(s) 319, 716, 967
Bsu15I ATCGAT 1 cut(s) 179
BsuRI GGCC 2 cut(s) 798, 1005
BsuTUI ATCGAT 1 cut(s) 179
BtgI CCRYGG 2 cut(s) 97, 607
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 2 cut(s) 132, 786
BtsI GCAGTG 1 cut(s) 924
BtsIMutI CAGTG 1 cut(s) 924
BveI ACCTGC 1 cut(s) 641
Cac8I GCNNGC 5 cut(s) 444, 456, 572, 672, 842
CciI TCATGA 1 cut(s) 777
CfoI GCGC 8 cut(s) 572, 574, 676, 741, 786, 840, 846, 991
Cfr13I GGNCC 4 cut(s) 707, 796, 797, 1004
ClaI ATCGAT 1 cut(s) 179
CseI GACGC 3 cut(s) 605, 622, 796
Csp6I GTAC 4 cut(s) 215, 665, 1000, 1015
CviAII CATG 6 cut(s) 608, 677, 778, 850, 877, 919
CviQI GTAC 4 cut(s) 215, 665, 1000, 1015
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EciI GGCGGA 4 cut(s) 19, 593, 862, 956
Ecl136II GAGCTC 1 cut(s) 587
Eco130I CCWWGG 2 cut(s) 272, 607
Eco24I GRGCYC 2 cut(s) 589, 800
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 707
Eco53kI GAGCTC 1 cut(s) 587
Eco91I GGTNACC 1 cut(s) 907
EcoICRI GAGCTC 1 cut(s) 587
EcoO109I RGGNCCY 3 cut(s) 707, 796, 797
EcoO65I GGTNACC 1 cut(s) 907
EcoRII CCWGG 6 cut(s) 421, 645, 709, 825, 949, 1007
EcoT14I CCWWGG 2 cut(s) 272, 607
EcoT38I GRGCYC 2 cut(s) 589, 800
ErhI CCWWGG 2 cut(s) 272, 607
FaeI CATG 6 cut(s) 611, 680, 781, 853, 880, 922
FaiI YATR 7 cut(s) 582, 609, 678, 779, 851, 878, 920
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 2 cut(s) 625, 845
FatI CATG 6 cut(s) 607, 676, 777, 849, 876, 918
FauI CCCGC 1 cut(s) 158
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 3 cut(s) 233, 596, 847
FokI GGATG 2 cut(s) 119, 773
FriOI GRGCYC 2 cut(s) 589, 800
Fsp4HI GCNGC 3 cut(s) 233, 596, 847
FspBI CTAG 3 cut(s) 39, 455, 1018
GlaI GCGC 8 cut(s) 571, 573, 675, 740, 785, 839, 845, 990
GluI GCNGC 3 cut(s) 233, 596, 847
GsuI CTGGAG 5 cut(s) 46, 732, 809, 965, 972
HaeII RGCGCY 2 cut(s) 742, 847
HaeIII GGCC 2 cut(s) 798, 1005
HapII CCGG 3 cut(s) 311, 345, 759
HgaI GACGC 3 cut(s) 605, 622, 796
HhaI GCGC 8 cut(s) 572, 574, 676, 741, 786, 840, 846, 991
Hin1II CATG 6 cut(s) 611, 680, 781, 853, 880, 922
Hin6I GCGC 8 cut(s) 570, 572, 674, 739, 784, 838, 844, 989
HinP1I GCGC 8 cut(s) 570, 572, 674, 739, 784, 838, 844, 989
HincII GTYRAC 2 cut(s) 490, 901
HindII GTYRAC 2 cut(s) 490, 901
HinfI GANTC 7 cut(s) 285, 341, 436, 464, 762, 869, 954
HpaII CCGG 3 cut(s) 311, 345, 759
HphI GGTGA 4 cut(s) 202, 212, 665, 919
Hpy166II GTNNAC 3 cut(s) 473, 490, 901
Hpy188I TCNGA 4 cut(s) 13, 290, 340, 976
Hpy188III TCNNGA 6 cut(s) 39, 766, 778, 790, 958, 982
Hpy8I GTNNAC 3 cut(s) 473, 490, 901
Hpy99I CGWCG 5 cut(s) 110, 736, 869, 890, 902
HpyAV CCTTC 3 cut(s) 698, 787, 955
HpyCH4III ACNGT 5 cut(s) 106, 128, 219, 487, 632
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 4 cut(s) 372, 382, 446, 722
HpyF10VI GCNNNNNNNGC 2 cut(s) 804, 846
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 6 cut(s) 611, 680, 781, 853, 880, 922
HspAI GCGC 8 cut(s) 570, 572, 674, 739, 784, 838, 844, 989
LmnI GCTCC 4 cut(s) 592, 603, 828, 835
Lsp1109I GCAGC 2 cut(s) 244, 607
LweI GCATC 2 cut(s) 297, 795
MaeI CTAG 3 cut(s) 39, 455, 1018
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 3 cut(s) 128, 397, 907
MbiI CCGCTC 1 cut(s) 662
MboII GAAGA 3 cut(s) 215, 647, 892
MflI RGATCY 3 cut(s) 319, 716, 967
MhlI GDGCHC 2 cut(s) 589, 800
MluI ACGCGT 1 cut(s) 614
MlyI GAGTC 2 cut(s) 878, 963
MseI TTAA 1 cut(s) 252
MspI CCGG 3 cut(s) 311, 345, 759
MspR9I CCNGG 8 cut(s) 312, 346, 423, 647, 711, 827, 951, 1009
Mva1269I GAATGC 1 cut(s) 456
MvaI CCWGG 6 cut(s) 423, 647, 711, 827, 951, 1009
MvnI CGCG 8 cut(s) 153, 431, 570, 572, 616, 674, 807, 840
MwoI GCNNNNNNNGC 2 cut(s) 804, 846
NciI CCSGG 2 cut(s) 312, 346
NcoI CCATGG 1 cut(s) 607
NheI GCTAGC 1 cut(s) 454
NlaIII CATG 6 cut(s) 611, 680, 781, 853, 880, 922
NlaIV GGNNCC 6 cut(s) 103, 247, 798, 799, 969, 1006
NmeAIII GCCGAG 1 cut(s) 912
NmuCI GTSAC 3 cut(s) 128, 397, 907
NspI RCATGY 1 cut(s) 922
PagI TCATGA 1 cut(s) 777
PaqCI CACCTGC 1 cut(s) 641
PauI GCGCGC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 894
PctI GAATGC 1 cut(s) 456
PfeI GAWTC 5 cut(s) 285, 341, 436, 464, 762
PflFI GACNNNGTC 2 cut(s) 260, 857
PfoI TCCNGGA 5 cut(s) 344, 421, 709, 825, 949
PkrI GCNGC 3 cut(s) 234, 597, 848
PleI GAGTC 2 cut(s) 877, 962
PpsI GAGTC 2 cut(s) 877, 962
PpuMI RGGWCCY 1 cut(s) 707
PshAI GACNNNNGTC 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 589
Psp5II RGGWCCY 1 cut(s) 707
Psp6I CCWGG 6 cut(s) 421, 645, 709, 825, 949, 1007
PspEI GGTNACC 1 cut(s) 907
PspGI CCWGG 6 cut(s) 421, 645, 709, 825, 949, 1007
PspN4I GGNNCC 6 cut(s) 103, 247, 798, 799, 969, 1006
PspOMI GGGCCC 1 cut(s) 796
PspPI GGNCC 4 cut(s) 707, 796, 797, 1004
PspPPI RGGWCCY 1 cut(s) 707
PsuI RGATCY 3 cut(s) 319, 716, 967
PsyI GACNNNGTC 2 cut(s) 260, 857
PteI GCGCGC 1 cut(s) 570
RsaI GTAC 4 cut(s) 216, 666, 1001, 1016
RsaNI GTAC 4 cut(s) 215, 665, 1000, 1015
SacI GAGCTC 1 cut(s) 589
SalI GTCGAC 1 cut(s) 899
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 3 cut(s) 233, 596, 847
Sau96I GGNCC 4 cut(s) 707, 796, 797, 1004
SchI GAGTC 2 cut(s) 878, 963
ScrFI CCNGG 8 cut(s) 312, 346, 423, 647, 711, 827, 951, 1009
SduI GDGCHC 2 cut(s) 589, 800
SfaNI GCATC 2 cut(s) 297, 795
SinI GGWCC 1 cut(s) 707
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
SspMI CTAG 3 cut(s) 39, 455, 1018
SstI GAGCTC 1 cut(s) 589
StyD4I CCNGG 8 cut(s) 310, 344, 421, 645, 709, 825, 949, 1007
StyI CCWWGG 2 cut(s) 272, 607
TaaI ACNGT 5 cut(s) 106, 128, 219, 487, 632
TaiI ACGT 1 cut(s) 120
TaqI TCGA 7 cut(s) 179, 658, 685, 734, 767, 900, 915
TaqII GACCGA 1 cut(s) 899
TauI GCSGC 1 cut(s) 849
TfiI GAWTC 5 cut(s) 285, 341, 436, 464, 762
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 931
TseFI GTSAC 3 cut(s) 128, 397, 907
TseI GCWGC 2 cut(s) 232, 595
Tsp45I GTSAC 3 cut(s) 128, 397, 907
TspDTI ATGAA 3 cut(s) 390, 794, 893
TspGWI ACGGA 2 cut(s) 86, 297
TspRI CASTG 1 cut(s) 931
Tth111I GACNNNGTC 2 cut(s) 260, 857
VpaK11BI GGWCC 1 cut(s) 707
XbaI TCTAGA 1 cut(s) 38
XceI RCATGY 1 cut(s) 922
XmiI GTMKAC 1 cut(s) 900
XspI CTAG 3 cut(s) 39, 455, 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.