Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005944

Physical Location & Seq

Genomic Coordinates Reverse (-)

26572733 .. 26574089

Gene Structure 1357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023653

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGGGCTCCGAGGAGGAGTGTTCCTCCGCCAACTCCAGATCATCCTCGTCCTCCACCTCCAGCACCTCTCACTACCTCTCCAAGTGCCTCCTCCGTGGCACCGTCGTTCTCCACGTCCTCCATGGTCACATCCGCTTCCCCAACACCCATGACATCATTTTCGGCAAGATGGGATTGTACAGTGTGTGTGAGCAGCCTGTGTTTGGCACCATTAAAGACATTGCCGTCCTACCTTGGAATGACGGATTCCGAACCCGAAACCGCCAGATGCTGGGCAAGGATCTTTTGGTGGTTGTTTCGGATTCCGGGAAGCTCTCGGTTCTGTCTTTCTGCAATGAAATGCACAGGTTTTTTCCTGTGACACAAGTTCAACTTTCTAATCCTGGAAACGCGAGGAATCAGCTTGCAAGAATGCTGGCCATTGATTCAAGTAGACTCTTCGCACAAGCTCTGTATGTTGTTTGTGAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

159

Amino Acids

17.47

Weight (kDa)

8.69

Isoelectric Point (pI)

52.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	58 - 148	7.2e-15	RSE1/DDB1/CPSF1 first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005944)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023647 RLG00000023653 RLG00000023665
rosa_multiflora	Rmu_sc0000968.1_g000012 Rmu_sc0001262.1_g000012 Rmu_sc0001518.1_g000014 Rmu_sc0002766.1_g000007 Rmu_sc0003078.1_g000002 Rmu_sc0005657.1_g000062 Rmu_sc0005657.1_g000063 Rmu_sc0012126.1_g000001 Rmu_sc0030925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108950 Rroxscaffold_6G00403400
rosa_rugosa	Rorug01G0021800 Rorug01G0146300.1 Rorug03G0358800.1 Rorug05G0241400 Rorug07G0101300
rosa_samantha	Rh1AG149600 Rh1BG381400 Rh1CG140700 Rh1CG395300 Rh3AG216500 Rh3AG217400 Rh3BG249600 Rh3CG245900 Rh6DG353100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccB1I	GGYRCC	2 cut(s)	101, 209
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	436
AccII	CGCG	1 cut(s)	395
AciI	CCGC	4 cut(s)	5, 30, 136, 265
AclWI	GGATC	1 cut(s)	291
AcoI	YGGCCR	1 cut(s)	420
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	206, 274
AgsI	TTSAA	2 cut(s)	374, 432
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	3 cut(s)	316, 406, 452
AluI	AGCT	3 cut(s)	316, 406, 452
AlwI	GGATC	1 cut(s)	291
AlwNI	CAGNNNCTG	1 cut(s)	274
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	1 cut(s)	196
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AsuC2I	CCSGG	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	422
BanI	GGYRCC	2 cut(s)	101, 209
BanII	GRGCYC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	310
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	2 cut(s)	310, 387
BmgBI	CACGTC	1 cut(s)	118
BmiI	GGNNCC	3 cut(s)	10, 103, 211
BmrFI	CCNGG	2 cut(s)	310, 387
BmsI	GCATC	1 cut(s)	261
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	2 cut(s)	22, 46
BpuMI	CCSGG	1 cut(s)	310
BsaJI	CCNNGG	4 cut(s)	12, 97, 124, 236
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 274
Bse3DI	GCAATG	2 cut(s)	222, 343
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	4 cut(s)	12, 97, 124, 236
BseGI	GGATG	2 cut(s)	44, 132
BseLI	CCNNNNNNNGG	2 cut(s)	206, 274
BseMI	GCAATG	2 cut(s)	222, 343
BseRI	GAGGAG	3 cut(s)	29, 32, 83
BseXI	GCAGC	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	274
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	1 cut(s)	422
BshNI	GGYRCC	2 cut(s)	101, 209
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	206, 274
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	41, 283
Bsp19I	CCATGG	1 cut(s)	124
BspACI	CCGC	4 cut(s)	5, 30, 136, 265
BspANI	GGCC	1 cut(s)	422
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	3 cut(s)	10, 103, 211
BspPI	GGATC	1 cut(s)	291
BspT107I	GGYRCC	2 cut(s)	101, 209
BsrDI	GCAATG	2 cut(s)	222, 343
BsrGI	TGTACA	1 cut(s)	180
BssECI	CCNNGG	4 cut(s)	12, 97, 124, 236
BssMI	GATC	2 cut(s)	41, 283
BssT1I	CCWWGG	2 cut(s)	124, 236
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	106, 185
Bst6I	CTCTTC	1 cut(s)	446
BstAUI	TGTACA	1 cut(s)	180
BstC8I	GCNNGC	3 cut(s)	7, 408, 420
BstDSI	CCRYGG	2 cut(s)	97, 124
BstF5I	GGATG	2 cut(s)	44, 132
BstFNI	CGCG	1 cut(s)	395
BstKTI	GATC	2 cut(s)	44, 286
BstMBI	GATC	2 cut(s)	41, 283
BstNI	CCWGG	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	308, 385
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	422
BtgI	CCRYGG	2 cut(s)	97, 124
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	44, 132
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	7, 408, 420
CaiI	CAGNNNCTG	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	125, 152
CviJI	RGCY	6 cut(s)	9, 199, 316, 406, 422, 452
CviKI_1	RGCY	6 cut(s)	9, 199, 316, 406, 422, 452
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	2 cut(s)	43, 285
DpnII	GATC	2 cut(s)	41, 283
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	124, 236
Eco24I	GRGCYC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	385
EcoT14I	CCWWGG	2 cut(s)	124, 236
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	2 cut(s)	124, 236
FaeI	CATG	2 cut(s)	128, 155
FaiI	YATR	4 cut(s)	126, 153, 459, 475
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FatI	CATG	2 cut(s)	124, 151
FblI	GTMKAC	1 cut(s)	436
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	2 cut(s)	31, 119
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	197
GsaI	CCCAGC	1 cut(s)	278
GsuI	CTGGAG	2 cut(s)	22, 46
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	1 cut(s)	309
Hin1II	CATG	2 cut(s)	128, 155
HinfI	GANTC	5 cut(s)	249, 305, 400, 428, 438
HpaII	CCGG	1 cut(s)	309
Hpy166II	GTNNAC	1 cut(s)	437
Hpy188I	TCNGA	3 cut(s)	13, 254, 304
Hpy188III	TCNNGA	1 cut(s)	39
Hpy8I	GTNNAC	1 cut(s)	437
Hpy99I	CGWCG	1 cut(s)	110
HpyCH4III	ACNGT	2 cut(s)	106, 185
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	336, 346, 410
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	128, 155
Kzo9I	GATC	2 cut(s)	41, 283
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	261
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	128, 361
MalI	GATC	2 cut(s)	43, 285
MboI	GATC	2 cut(s)	41, 283
MboII	GAAGA	1 cut(s)	433
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	11
MlsI	TGGCCA	1 cut(s)	422
MluNI	TGGCCA	1 cut(s)	422
MlyI	GAGTC	1 cut(s)	432
Mox20I	TGGCCA	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	422
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	2 cut(s)	310, 387
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	387
MvnI	CGCG	1 cut(s)	395
NciI	CCSGG	1 cut(s)	310
NcoI	CCATGG	1 cut(s)	124
NdeII	GATC	2 cut(s)	41, 283
NlaIII	CATG	2 cut(s)	128, 155
NlaIV	GGNNCC	3 cut(s)	10, 103, 211
NmuCI	GTSAC	2 cut(s)	128, 361
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	420
PfeI	GAWTC	4 cut(s)	249, 305, 400, 428
PflMI	CCANNNNNTGG	1 cut(s)	274
PfoI	TCCNGGA	2 cut(s)	308, 385
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	3 cut(s)	10, 103, 211
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	2 cut(s)	41, 283
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	2 cut(s)	310, 387
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	9 cut(s)	62, 71, 81, 120, 238, 318, 353, 408, 454
SfaNI	GCATC	1 cut(s)	261
SsiI	CCGC	4 cut(s)	5, 30, 136, 265
StyD4I	CCNGG	2 cut(s)	308, 385
StyI	CCWWGG	2 cut(s)	124, 236
TaaI	ACNGT	2 cut(s)	106, 185
TaiI	ACGT	1 cut(s)	120
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	4 cut(s)	249, 305, 400, 428
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	128, 361
TseI	GCWGC	1 cut(s)	196
Tsp45I	GTSAC	2 cut(s)	128, 361
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	2 cut(s)	86, 261
TspRI	CASTG	1 cut(s)	190
Van91I	CCANNNNNTGG	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.