Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005657.1

Orthogroup ID

OG0005944

Physical Location & Seq

Genomic Coordinates Reverse (-)

344488 .. 345753

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005657.1_g000063.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggcagtctccgaggaggagtgttcctccgccaactccagatcatcgtcctcctccacctccagcacctctcactacctctccaagtgcctcctccgtggcaccgtcgttctccacgtcctccacagtcacatccgcttccccaactcccgcgacatcgttttcggcaaggagaaatcgatagagttggtgataatcggtgaagatgggatcgtacagtctgtgtgtgagcagcctgtgtttggcaccattaaagacattgccgtcctaccttggaatgacggattccgaacccgaaaccgccagatgccgggcaaggatcttttggtcgttgtttcggattccgggaagctctcggttctttctttctgcaatgaaatgcacaggtattttaagaaggaactaaagtcccttaacagagaattgcagctgcacattttggaacttgctgatattctcgtggacagaccatcacaatatgcagggagagtggaagaaatatttcttatattcaagaactcgcatcatcttatgaactcattgcgccctcatcaggctagggtaacactaattcacattttagaacttcagataaaacgacgtaaacaagctgttgaggatacaaagaggtatgctttgaacaattactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

216

Amino Acids

24.67

Weight (kDa)

9.06

Isoelectric Point (pI)

65.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005944)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023647 RLG00000023653 RLG00000023665
rosa_multiflora	Rmu_sc0000968.1_g000012 Rmu_sc0001262.1_g000012 Rmu_sc0001518.1_g000014 Rmu_sc0002766.1_g000007 Rmu_sc0003078.1_g000002 Rmu_sc0005657.1_g000062 Rmu_sc0005657.1_g000063 Rmu_sc0012126.1_g000001 Rmu_sc0030925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108950 Rroxscaffold_6G00403400
rosa_rugosa	Rorug01G0021800 Rorug01G0146300.1 Rorug03G0358800.1 Rorug05G0241400 Rorug07G0101300
rosa_samantha	Rh1AG149600 Rh1BG381400 Rh1CG140700 Rh1CG395300 Rh3AG216500 Rh3AG217400 Rh3BG249600 Rh3CG245900 Rh6DG353100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccB1I	GGYRCC	2 cut(s)	101, 245
AccII	CGCG	1 cut(s)	153
AciI	CCGC	4 cut(s)	30, 136, 151, 301
AclWI	GGATC	2 cut(s)	218, 327
AcuI	CTGAAG	1 cut(s)	572
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	3 cut(s)	242, 310, 553
AgsI	TTSAA	2 cut(s)	514, 640
AjiI	CACGTC	1 cut(s)	118
AluBI	AGCT	3 cut(s)	352, 430, 611
AluI	AGCT	3 cut(s)	352, 430, 611
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	218, 327
ApeKI	GCWGC	3 cut(s)	232, 427, 430
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
Asp700I	GAANNNNTTC	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	546
AsuC2I	CCSGG	2 cut(s)	312, 346
AsuHPI	GGTGA	2 cut(s)	202, 212
BanI	GGYRCC	2 cut(s)	101, 245
BauI	CACGAG	1 cut(s)	458
BbvI	GCAGC	3 cut(s)	244, 417, 439
BccI	CCATC	2 cut(s)	200, 478
BceAI	ACGGC	1 cut(s)	248
BciVI	GTATCC	1 cut(s)	613
BcnI	CCSGG	2 cut(s)	312, 346
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	558
BfuI	GTATCC	1 cut(s)	613
BisI	GCNGC	3 cut(s)	233, 428, 431
BlsI	GCNGC	3 cut(s)	234, 429, 432
Bme1390I	CCNGG	2 cut(s)	312, 346
BmgBI	CACGTC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	103, 247
BmrFI	CCNGG	2 cut(s)	312, 346
BmsI	GCATC	2 cut(s)	297, 532
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	2 cut(s)	22, 46
BpuMI	CCSGG	2 cut(s)	312, 346
Bsa29I	ATCGAT	1 cut(s)	179
BsaJI	CCNNGG	3 cut(s)	12, 97, 272
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 310, 553
Bse3DI	GCAATG	3 cut(s)	258, 379, 539
BseCI	ATCGAT	1 cut(s)	179
BseDI	CCNNGG	3 cut(s)	12, 97, 272
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	3 cut(s)	242, 310, 553
BseMI	GCAATG	3 cut(s)	258, 379, 539
BseRI	GAGGAG	4 cut(s)	29, 32, 43, 83
BseXI	GCAGC	3 cut(s)	244, 417, 439
BsgI	GTGCAG	1 cut(s)	416
Bsh1236I	CGCG	1 cut(s)	153
BshNI	GGYRCC	2 cut(s)	101, 245
BshVI	ATCGAT	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	311, 345
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	3 cut(s)	242, 310, 553
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	394
Bsp143I	GATC	3 cut(s)	41, 210, 319
BspACI	CCGC	4 cut(s)	30, 136, 151, 301
BspDI	ATCGAT	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	103, 247
BspPI	GGATC	2 cut(s)	218, 327
BspT107I	GGYRCC	2 cut(s)	101, 245
BsrDI	GCAATG	3 cut(s)	258, 379, 539
BssECI	CCNNGG	3 cut(s)	12, 97, 272
BssMI	GATC	3 cut(s)	41, 210, 319
BssSI	CACGAG	1 cut(s)	458
BssT1I	CCWWGG	1 cut(s)	272
Bst2BI	CACGAG	1 cut(s)	458
Bst4CI	ACNGT	3 cut(s)	106, 128, 219
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	546
BstKTI	GATC	3 cut(s)	44, 213, 322
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	3 cut(s)	41, 210, 319
BstSCI	CCNGG	2 cut(s)	310, 344
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	244, 417, 439
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	613
BsuTUI	ATCGAT	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	132
CfoI	GCGC	1 cut(s)	546
ClaI	ATCGAT	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	215
CviJI	RGCY	5 cut(s)	235, 352, 430, 557, 611
CviKI_1	RGCY	5 cut(s)	235, 352, 430, 557, 611
CviQI	GTAC	1 cut(s)	215
DpnI	GATC	3 cut(s)	43, 212, 321
DpnII	GATC	3 cut(s)	41, 210, 319
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	572
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
FaiI	YATR	4 cut(s)	480, 509, 533, 633
FaqI	GGGAC	1 cut(s)	394
FauI	CCCGC	1 cut(s)	158
Fnu4HI	GCNGC	3 cut(s)	233, 428, 431
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	233, 428, 431
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	1 cut(s)	545
GluI	GCNGC	3 cut(s)	233, 428, 431
GsuI	CTGGAG	2 cut(s)	22, 46
HapII	CCGG	2 cut(s)	311, 345
HhaI	GCGC	1 cut(s)	546
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HinfI	GANTC	2 cut(s)	285, 341
HpaII	CCGG	2 cut(s)	311, 345
HphI	GGTGA	2 cut(s)	202, 212
Hpy166II	GTNNAC	2 cut(s)	463, 605
Hpy188I	TCNGA	4 cut(s)	13, 290, 340, 591
Hpy188III	TCNNGA	2 cut(s)	39, 514
Hpy8I	GTNNAC	2 cut(s)	463, 605
Hpy99I	CGWCG	2 cut(s)	110, 603
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	3 cut(s)	106, 128, 219
HpyCH4IV	ACGT	2 cut(s)	117, 601
HpyCH4V	TGCA	5 cut(s)	372, 382, 427, 433, 482
HpySE526I	ACGT	2 cut(s)	117, 601
HspAI	GCGC	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	41, 210, 319
LpnPI	CCDG	9 cut(s)	52, 76, 249, 317, 324, 358, 370, 468, 539
Lsp1109I	GCAGC	3 cut(s)	244, 417, 439
LweI	GCATC	2 cut(s)	297, 532
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	2 cut(s)	117, 601
MaeIII	GTNAC	2 cut(s)	128, 562
MalI	GATC	3 cut(s)	43, 212, 321
MboI	GATC	3 cut(s)	41, 210, 319
MboII	GAAGA	2 cut(s)	215, 506
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	3 cut(s)	422, 570, 643
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	3 cut(s)	252, 393, 414
MspA1I	CMGCKG	1 cut(s)	430
MspI	CCGG	2 cut(s)	311, 345
MspR9I	CCNGG	2 cut(s)	312, 346
MvnI	CGCG	1 cut(s)	153
NciI	CCSGG	2 cut(s)	312, 346
NdeII	GATC	3 cut(s)	41, 210, 319
NlaIV	GGNNCC	2 cut(s)	103, 247
NmuCI	GTSAC	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	285, 341
PfoI	TCCNGGA	1 cut(s)	344
PkrI	GCNGC	3 cut(s)	234, 429, 432
PspN4I	GGNNCC	2 cut(s)	103, 247
PsuI	RGATCY	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	430
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SaqAI	TTAA	3 cut(s)	252, 393, 414
SatI	GCNGC	3 cut(s)	233, 428, 431
Sau3AI	GATC	3 cut(s)	41, 210, 319
ScrFI	CCNGG	2 cut(s)	312, 346
SfaNI	GCATC	2 cut(s)	297, 532
Sse9I	AATT	3 cut(s)	422, 570, 643
SsiI	CCGC	4 cut(s)	30, 136, 151, 301
SspI	AATATT	1 cut(s)	501
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	2 cut(s)	310, 344
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	3 cut(s)	106, 128, 219
TaiI	ACGT	2 cut(s)	120, 604
TaqI	TCGA	1 cut(s)	179
TasI	AATT	3 cut(s)	422, 570, 643
TfiI	GAWTC	2 cut(s)	285, 341
Tru1I	TTAA	3 cut(s)	252, 393, 414
Tru9I	TTAA	3 cut(s)	252, 393, 414
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	3 cut(s)	232, 427, 430
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	390, 548
TspGWI	ACGGA	2 cut(s)	86, 297
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.