Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003078.1

Orthogroup ID

OG0005944

Physical Location & Seq

Genomic Coordinates Forward (+)

3190 .. 4041

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003078.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atggcggtctccgaggaggagtgttcctccgccaactccagatcatcctcgtcctccacctccagcacctctcactacctctccaagtgcctcctccgtggcaccgtcgttctccacgtcctccacggtcacatccgcttccccaactcccgcgacatcgttttcggcaaggagaaatcgatagagttggtgataatcggtgaagatgggatcgtacagtctgtgtgtgagcagcctgtgttcggcaccattaaagacattgccgtcctaccttggaatgacggattccgaacccgaaaccgccagatgccgggcaaggatcttttggtcgctgtttcggattccgggaagctctcggttctttctttctgcaatgaaatgcacaggttttttcctgttacacaagttcaactttctaatcctggaaactcgaggaatcagcttgcaagaatgctagccattgattcaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

157

Amino Acids

17.31

Weight (kDa)

8.44

Isoelectric Point (pI)

59.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005944)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023647 RLG00000023653 RLG00000023665
rosa_multiflora	Rmu_sc0000968.1_g000012 Rmu_sc0001262.1_g000012 Rmu_sc0001518.1_g000014 Rmu_sc0002766.1_g000007 Rmu_sc0003078.1_g000002 Rmu_sc0005657.1_g000062 Rmu_sc0005657.1_g000063 Rmu_sc0012126.1_g000001 Rmu_sc0030925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108950 Rroxscaffold_6G00403400
rosa_rugosa	Rorug01G0021800 Rorug01G0146300.1 Rorug03G0358800.1 Rorug05G0241400 Rorug07G0101300
rosa_samantha	Rh1AG149600 Rh1BG381400 Rh1CG140700 Rh1CG395300 Rh3AG216500 Rh3AG217400 Rh3BG249600 Rh3CG245900 Rh6DG353100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccB1I	GGYRCC	2 cut(s)	101, 245
AccII	CGCG	1 cut(s)	153
AciI	CCGC	5 cut(s)	5, 30, 136, 151, 301
AclWI	GGATC	2 cut(s)	218, 327
AfaI	GTAC	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	242, 310
AgsI	TTSAA	2 cut(s)	410, 468
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	2 cut(s)	352, 442
AluI	AGCT	2 cut(s)	352, 442
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	218, 327
Ama87I	CYCGRG	1 cut(s)	430
ApeKI	GCWGC	1 cut(s)	232
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AsuC2I	CCSGG	2 cut(s)	312, 346
AsuHPI	GGTGA	2 cut(s)	202, 212
AsuNHI	GCTAGC	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	430
BanI	GGYRCC	2 cut(s)	101, 245
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	423
BcnI	CCSGG	2 cut(s)	312, 346
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	455
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme1390I	CCNGG	3 cut(s)	312, 346, 423
BmeT110I	CYCGRG	1 cut(s)	430
BmgBI	CACGTC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	103, 247
BmrFI	CCNGG	3 cut(s)	312, 346, 423
BmsI	GCATC	1 cut(s)	297
BmtI	GCTAGC	1 cut(s)	458
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	2 cut(s)	22, 46
BpuMI	CCSGG	2 cut(s)	312, 346
Bsa29I	ATCGAT	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	4 cut(s)	12, 97, 124, 272
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 310
Bse3DI	GCAATG	2 cut(s)	258, 379
BseBI	CCWGG	1 cut(s)	423
BseCI	ATCGAT	1 cut(s)	179
BseDI	CCNNGG	4 cut(s)	12, 97, 124, 272
BseGI	GGATG	2 cut(s)	44, 132
BseLI	CCNNNNNNNGG	2 cut(s)	242, 310
BseMI	GCAATG	2 cut(s)	258, 379
BseRI	GAGGAG	3 cut(s)	29, 32, 83
BseXI	GCAGC	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	153
BshNI	GGYRCC	2 cut(s)	101, 245
BshVI	ATCGAT	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	2 cut(s)	311, 345
BslI	CCNNNNNNNGG	2 cut(s)	242, 310
BsmAI	GTCTC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	456
Bso31I	GGTCTC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	41, 210, 319
BspACI	CCGC	5 cut(s)	5, 30, 136, 151, 301
BspDI	ATCGAT	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	103, 247
BspOI	GCTAGC	1 cut(s)	458
BspPI	GGATC	2 cut(s)	218, 327
BspT107I	GGYRCC	2 cut(s)	101, 245
BspTNI	GGTCTC	1 cut(s)	13
BsrDI	GCAATG	2 cut(s)	258, 379
BssECI	CCNNGG	4 cut(s)	12, 97, 124, 272
BssMI	GATC	3 cut(s)	41, 210, 319
BssT1I	CCWWGG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	3 cut(s)	106, 128, 219
BstC8I	GCNNGC	2 cut(s)	444, 456
BstDSI	CCRYGG	2 cut(s)	97, 124
BstF5I	GGATG	2 cut(s)	44, 132
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	3 cut(s)	44, 213, 322
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	3 cut(s)	41, 210, 319
BstNI	CCWGG	1 cut(s)	423
BstSCI	CCNGG	3 cut(s)	310, 344, 421
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	179
BtgI	CCRYGG	2 cut(s)	97, 124
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	44, 132
Cac8I	GCNNGC	2 cut(s)	444, 456
ClaI	ATCGAT	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	215
CviJI	RGCY	4 cut(s)	235, 352, 442, 458
CviKI_1	RGCY	4 cut(s)	235, 352, 442, 458
CviQI	GTAC	1 cut(s)	215
DpnI	GATC	3 cut(s)	43, 212, 321
DpnII	GATC	3 cut(s)	41, 210, 319
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	272
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FauI	CCCGC	1 cut(s)	158
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	2 cut(s)	31, 119
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	1 cut(s)	455
GluI	GCNGC	1 cut(s)	233
GsuI	CTGGAG	2 cut(s)	22, 46
HapII	CCGG	2 cut(s)	311, 345
HinfI	GANTC	4 cut(s)	285, 341, 436, 464
HpaII	CCGG	2 cut(s)	311, 345
HphI	GGTGA	2 cut(s)	202, 212
Hpy188I	TCNGA	3 cut(s)	13, 290, 340
Hpy188III	TCNNGA	1 cut(s)	39
Hpy99I	CGWCG	1 cut(s)	110
HpyCH4III	ACNGT	3 cut(s)	106, 128, 219
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	372, 382, 446
HpySE526I	ACGT	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	41, 210, 319
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	455
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	128, 397
MalI	GATC	3 cut(s)	43, 212, 321
MboI	GATC	3 cut(s)	41, 210, 319
MboII	GAAGA	1 cut(s)	215
MflI	RGATCY	1 cut(s)	319
MseI	TTAA	1 cut(s)	252
MspI	CCGG	2 cut(s)	311, 345
MspR9I	CCNGG	3 cut(s)	312, 346, 423
Mva1269I	GAATGC	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	423
MvnI	CGCG	1 cut(s)	153
NciI	CCSGG	2 cut(s)	312, 346
NdeII	GATC	3 cut(s)	41, 210, 319
NheI	GCTAGC	1 cut(s)	454
NlaIV	GGNNCC	2 cut(s)	103, 247
NmuCI	GTSAC	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	456
PfeI	GAWTC	4 cut(s)	285, 341, 436, 464
PfoI	TCCNGGA	2 cut(s)	344, 421
PkrI	GCNGC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	103, 247
PspXI	VCTCGAGB	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	3 cut(s)	41, 210, 319
ScrFI	CCNGG	3 cut(s)	312, 346, 423
SetI	ASST	9 cut(s)	62, 71, 81, 120, 274, 354, 389, 444, 473
SfaNI	GCATC	1 cut(s)	297
Sfr274I	CTCGAG	1 cut(s)	430
SlaI	CTCGAG	1 cut(s)	430
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
SsiI	CCGC	5 cut(s)	5, 30, 136, 151, 301
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	3 cut(s)	310, 344, 421
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	3 cut(s)	106, 128, 219
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	179, 431
TfiI	GAWTC	4 cut(s)	285, 341, 436, 464
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	390
TspGWI	ACGGA	2 cut(s)	86, 297
XhoI	CTCGAG	1 cut(s)	430
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.