Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005944

Physical Location & Seq

Genomic Coordinates Reverse (-)

26854609 .. 26855989

Gene Structure 1381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023665

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGGTCTCCGAGGAAGAGTGTTCCTCGGCCAACTCCAGATCATCCTCCTCCTCCATCTCCAGCAGCTCTCACTACCTCTCCAAGTGCCTCCTCTGTGGCACCGTTGTTCTCCACGTCCTGTACGGTCACATCCGCTTCCCCAACTCCCGAGAAATCGATAGAGTTGGTGAAGATGGGATTGTACAGTCTGTGTGTGAGCAGCCTGTGTTTGGCACCATTAAAGACATTGCCGTCCTACCTTGGAATGACATATTCCGAACCCGAAACCGCCAGATGCTGGGCAAGGATCTTTTGGTGGTTGTTTCGGATTCCGGGAAGCTCTCGATTCTCTCTTTCTGCAACGAAATGCATAGTAGACTCTTCGCACAAGCTCTGTATGTTGTTTGTGAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

133

Amino Acids

14.6

Weight (kDa)

6.05

Isoelectric Point (pI)

64.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	52 - 119	1.4e-09	RSE1/DDB1/CPSF1 first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005944)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023647 RLG00000023653 RLG00000023665
rosa_multiflora	Rmu_sc0000968.1_g000012 Rmu_sc0001262.1_g000012 Rmu_sc0001518.1_g000014 Rmu_sc0002766.1_g000007 Rmu_sc0003078.1_g000002 Rmu_sc0005657.1_g000062 Rmu_sc0005657.1_g000063 Rmu_sc0012126.1_g000001 Rmu_sc0030925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108950 Rroxscaffold_6G00403400
rosa_rugosa	Rorug01G0021800 Rorug01G0146300.1 Rorug03G0358800.1 Rorug05G0241400 Rorug07G0101300
rosa_samantha	Rh1AG149600 Rh1BG381400 Rh1CG140700 Rh1CG395300 Rh3AG216500 Rh3AG217400 Rh3BG249600 Rh3CG245900 Rh6DG353100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AccB1I	GGYRCC	2 cut(s)	101, 215
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	358
AciI	CCGC	3 cut(s)	5, 136, 271
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	30
AfaI	GTAC	2 cut(s)	125, 186
AfiI	CCNNNNNNNGG	2 cut(s)	212, 280
AjiI	CACGTC	1 cut(s)	118
AluBI	AGCT	3 cut(s)	69, 322, 374
AluI	AGCT	3 cut(s)	69, 322, 374
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	297
AlwNI	CAGNNNCTG	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	66, 202
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	150
BanI	GGYRCC	2 cut(s)	101, 215
BbvI	GCAGC	2 cut(s)	78, 214
BccI	CCATC	2 cut(s)	65, 170
BceAI	ACGGC	1 cut(s)	218
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	13
BisI	GCNGC	2 cut(s)	67, 203
BlsI	GCNGC	2 cut(s)	68, 204
Bme1390I	CCNGG	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	150
BmgBI	CACGTC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	103, 217
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	2 cut(s)	22, 46
BpuMI	CCSGG	1 cut(s)	316
Bsa29I	ATCGAT	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	3 cut(s)	12, 27, 242
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 280
Bse3DI	GCAATG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	159
BseDI	CCNNGG	3 cut(s)	12, 27, 242
BseGI	GGATG	2 cut(s)	44, 132
BseLI	CCNNNNNNNGG	2 cut(s)	212, 280
BseMI	GCAATG	1 cut(s)	228
BseRI	GAGGAG	3 cut(s)	40, 43, 83
BseXI	GCAGC	2 cut(s)	78, 214
BseYI	CCCAGC	1 cut(s)	280
BshFI	GGCC	1 cut(s)	32
BshNI	GGYRCC	2 cut(s)	101, 215
BshVI	ATCGAT	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	2 cut(s)	212, 280
BsmAI	GTCTC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	32
Bso31I	GGTCTC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	150
Bsp1407I	TGTACA	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	41, 289
BspACI	CCGC	3 cut(s)	5, 136, 271
BspANI	GGCC	1 cut(s)	32
BspDI	ATCGAT	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	103, 217
BspPI	GGATC	1 cut(s)	297
BspT107I	GGYRCC	2 cut(s)	101, 215
BspTNI	GGTCTC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	184
BssECI	CCNNGG	3 cut(s)	12, 27, 242
BssMI	GATC	2 cut(s)	41, 289
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	3 cut(s)	106, 128, 189
Bst6I	CTCTTC	2 cut(s)	12, 368
BstAUI	TGTACA	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	44, 132
BstKTI	GATC	2 cut(s)	44, 292
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	2 cut(s)	41, 289
BstSCI	CCNGG	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	78, 214
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
Bsu15I	ATCGAT	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	32
BsuTUI	ATCGAT	1 cut(s)	159
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	44, 132
CaiI	CAGNNNCTG	1 cut(s)	280
ClaI	ATCGAT	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	124, 185
CviJI	RGCY	5 cut(s)	32, 69, 205, 322, 374
CviKI_1	RGCY	5 cut(s)	32, 69, 205, 322, 374
CviQI	GTAC	2 cut(s)	124, 185
DpnI	GATC	2 cut(s)	43, 291
DpnII	GATC	2 cut(s)	41, 289
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	12, 368
EarI	CTCTTC	2 cut(s)	12, 368
Eco130I	CCWWGG	1 cut(s)	242
Eco31I	GGTCTC	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	242
EcoT22I	ATGCAT	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	242
FaiI	YATR	4 cut(s)	254, 354, 381, 397
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	67, 203
FokI	GGATG	2 cut(s)	31, 119
Fsp4HI	GCNGC	2 cut(s)	67, 203
GluI	GCNGC	2 cut(s)	67, 203
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	2 cut(s)	22, 46
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	315
HinfI	GANTC	3 cut(s)	311, 328, 360
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	3 cut(s)	13, 260, 310
Hpy188III	TCNNGA	3 cut(s)	39, 150, 325
Hpy8I	GTNNAC	1 cut(s)	359
HpyCH4III	ACNGT	3 cut(s)	106, 128, 189
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	342, 352
HpySE526I	ACGT	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	41, 289
LpnPI	CCDG	7 cut(s)	52, 76, 134, 219, 266, 287, 328
Lsp1109I	GCAGC	2 cut(s)	78, 214
LweI	GCATC	1 cut(s)	267
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	43, 291
MboI	GATC	2 cut(s)	41, 289
MboII	GAAGA	3 cut(s)	29, 185, 355
MflI	RGATCY	1 cut(s)	289
MlyI	GAGTC	1 cut(s)	354
MnlI	CCTC	8 cut(s)	7, 37, 58, 61, 64, 89, 101, 104
Mph1103I	ATGCAT	1 cut(s)	354
MseI	TTAA	1 cut(s)	222
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	316
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	2 cut(s)	41, 289
NlaIV	GGNNCC	2 cut(s)	103, 217
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	1 cut(s)	128
NsiI	ATGCAT	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	311, 328
PflMI	CCANNNNNTGG	1 cut(s)	280
PfoI	TCCNGGA	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	68, 204
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	103, 217
PstNI	CAGNNNCTG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	2 cut(s)	125, 186
RsaNI	GTAC	2 cut(s)	124, 185
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	67, 203
Sau3AI	GATC	2 cut(s)	41, 289
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	1 cut(s)	316
SetI	ASST	6 cut(s)	71, 81, 120, 244, 324, 376
SfaNI	GCATC	1 cut(s)	267
SsiI	CCGC	3 cut(s)	5, 136, 271
StyD4I	CCNGG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	3 cut(s)	106, 128, 189
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	159, 326
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	311, 328
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	2 cut(s)	66, 202
Tsp45I	GTSAC	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	358
Zsp2I	ATGCAT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.