Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005944

Physical Location & Seq

Genomic Coordinates Reverse (-)

3533204 .. 3535243

Gene Structure 2040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0021800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGGCGGAGAGAGGAAGGTTGTGTGTGTTACAGGAGCTTCTGGTTTCATAGCTTCATGGCTGGTGAAGATTTTGTTACAGCGAGGTTATGTCGTCAAAGCCACCGTTCGTGACCCAAATGATCCAAAGAAAACAGAACACTTGCTCTCACTTGATGGAGCAAAGGAAAGGCTTCATTTGTTCAAAGCAGACTTGTTAGAAGAGGGGTCTTTTGACCTTGTAGTTGATGGATGTGAAGGTGTTTTCCATACAGCATCTCCGGTACTATTTTCATCAATCAGCGACCCACAGGTTCTTCCGATTCCCATGACTACTTTCTTTCCTATATGCCTTACATCAGAACTGATTGATCCTGCAGTAAAGGGAACGCTTAATGTTCTTAAATCGTGCGTGAAATTTCCAACAATCAAGAGGGTAGTTTTAACATCTTCCATGGCTGCAGTTATTATCAATGGAAGACCTTTAACCTCTAATGTAGAAGTTGATGAAACATGGTTTTCTGATCCACTTGTTTGTGAGGAGTTGAAGGTATCAGAGGAAGCTGCTTGGAAATTTGCTAATGAAAATGGGATTGACCTGGTGACCATAAATCCAGCATATGTGATGGGTCCGCTCTTGCAGCCAACTCTTAATTACACTGTGGAGATGGTTCTGAATCTCAAGAATGATGCTCACGAAGTAACAAATGCATATTATTTATCCACTGATGTTAGAGATGTTGCCTCGGCTCATATTCAAGCATTTGAAGTTCCTTCAGCGAGTGGAAGATATTGTTTAGTTGCAAATGTCACCCCCATTTACAAGGCTCTGAAGATTTTAGAACAACTTCATCCGACTTTGTGCCCACCTGAAATATGTGAGCATGATATCCCTTCTGCCCCAGAGTATCAAATATCCCAGAAAAAAGCAAAAAGTTTGGGAGTTAGTTTCCTTCCGTTGGAAGTAAGTCTCAGGGACACTATTGAAAGCCTGAAGGAGAAGGGATTCCTCGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

332

Amino Acids

36.44

Weight (kDa)

5.19

Isoelectric Point (pI)

28.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	5 - 85	3.7e-07	NmrA-like family
Epimerase	PF01370	8 - 86	9.8e-08	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	10 - 248	5.2e-12	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	10 - 83	4.5e-07	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	12 - 147	3.5e-07	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005944)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023647 RLG00000023653 RLG00000023665
rosa_multiflora	Rmu_sc0000968.1_g000012 Rmu_sc0001262.1_g000012 Rmu_sc0001518.1_g000014 Rmu_sc0002766.1_g000007 Rmu_sc0003078.1_g000002 Rmu_sc0005657.1_g000062 Rmu_sc0005657.1_g000063 Rmu_sc0012126.1_g000001 Rmu_sc0030925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108950 Rroxscaffold_6G00403400
rosa_rugosa	Rorug01G0021800 Rorug01G0146300.1 Rorug03G0358800.1 Rorug05G0241400 Rorug07G0101300
rosa_samantha	Rh1AG149600 Rh1BG381400 Rh1CG140700 Rh1CG395300 Rh3AG216500 Rh3AG217400 Rh3BG249600 Rh3CG245900 Rh6DG353100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	989
AccBSI	CCGCTC	1 cut(s)	613
AciI	CCGC	2 cut(s)	6, 611
AclWI	GGATC	3 cut(s)	116, 344, 497
AcsI	RAATTY	2 cut(s)	395, 551
AcuI	CTGAAG	3 cut(s)	738, 830, 992
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	937
AgsI	TTSAA	5 cut(s)	184, 526, 737, 746, 965
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	3 cut(s)	38, 53, 542
AluI	AGCT	3 cut(s)	38, 53, 542
Alw26I	GTCTC	1 cut(s)	953
AlwI	GGATC	3 cut(s)	116, 344, 497
Ama87I	CYCGRG	1 cut(s)	989
ApeKI	GCWGC	3 cut(s)	437, 542, 619
ApoI	RAATTY	2 cut(s)	395, 551
Asp700I	GAANNNNTTC	3 cut(s)	171, 825, 983
AspS9I	GGNCC	1 cut(s)	608
AsuHPI	GGTGA	3 cut(s)	76, 592, 781
AvaI	CYCGRG	1 cut(s)	989
AvaII	GGWCC	1 cut(s)	608
BaeGI	GKGCMC	1 cut(s)	845
BbsI	GAAGAC	1 cut(s)	463
BbvI	GCAGC	3 cut(s)	424, 529, 631
BccI	CCATC	4 cut(s)	149, 221, 598, 640
BciT130I	CCWGG	1 cut(s)	578
BcoDI	GTCTC	1 cut(s)	953
BfmI	CTRYAG	2 cut(s)	354, 438
BisI	GCNGC	3 cut(s)	438, 543, 620
BlsI	GCNGC	3 cut(s)	439, 544, 621
Bme1390I	CCNGG	1 cut(s)	578
Bme18I	GGWCC	1 cut(s)	608
BmeT110I	CYCGRG	1 cut(s)	989
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	1 cut(s)	609
BmrFI	CCNGG	1 cut(s)	578
BmsI	GCATC	2 cut(s)	263, 658
BpiI	GAAGAC	1 cut(s)	463
BpuEI	CTTGAG	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	432, 723
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	937
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	2 cut(s)	432, 723
BseGI	GGATG	2 cut(s)	236, 829
BseLI	CCNNNNNNNGG	1 cut(s)	937
BseMII	CTCAG	1 cut(s)	964
BseRI	GAGGAG	1 cut(s)	533
BseSI	GKGCMC	1 cut(s)	845
BseXI	GCAGC	3 cut(s)	424, 529, 631
BsiHKCI	CYCGRG	1 cut(s)	989
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	968
BslI	CCNNNNNNNGG	1 cut(s)	937
BsmAI	GTCTC	1 cut(s)	953
BsmFI	GGGAC	1 cut(s)	968
BsoBI	CYCGRG	1 cut(s)	989
Bsp1286I	GDGCHC	1 cut(s)	845
Bsp143I	GATC	3 cut(s)	121, 349, 502
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	2 cut(s)	6, 611
BspCNI	CTCAG	1 cut(s)	963
BspLI	GGNNCC	1 cut(s)	609
BspMAI	CTGCAG	2 cut(s)	358, 442
BspPI	GGATC	3 cut(s)	116, 344, 497
BsrBI	CCGCTC	1 cut(s)	613
BssECI	CCNNGG	2 cut(s)	432, 723
BssMI	GATC	3 cut(s)	121, 349, 502
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	2 cut(s)	106, 640
Bst6I	CTCTTC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	950
BstDSI	CCRYGG	1 cut(s)	432
BstEII	GGTNACC	1 cut(s)	580
BstF5I	GGATG	2 cut(s)	236, 829
BstKTI	GATC	3 cut(s)	124, 352, 505
BstMAI	GTCTC	1 cut(s)	953
BstMBI	GATC	3 cut(s)	121, 349, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	619
BstNI	CCWGG	1 cut(s)	578
BstPI	GGTNACC	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	576
BstSFI	CTRYAG	2 cut(s)	354, 438
BstSLI	GKGCMC	1 cut(s)	845
BstV1I	GCAGC	3 cut(s)	424, 529, 631
BstV2I	GAAGAC	1 cut(s)	463
BtgI	CCRYGG	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	236, 829
BtsIMutI	CAGTG	2 cut(s)	636, 702
Cfr13I	GGNCC	1 cut(s)	608
CsiI	ACCWGGT	1 cut(s)	576
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	5 cut(s)	57, 307, 433, 492, 863
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	1 cut(s)	950
DpnI	GATC	3 cut(s)	123, 351, 504
DpnII	GATC	3 cut(s)	121, 349, 502
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	432
Eco32I	GATATC	1 cut(s)	868
Eco47I	GGWCC	1 cut(s)	608
Eco57I	CTGAAG	3 cut(s)	738, 830, 992
Eco88I	CYCGRG	1 cut(s)	989
Eco91I	GGTNACC	1 cut(s)	580
EcoO65I	GGTNACC	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	576
EcoRV	GATATC	1 cut(s)	868
EcoT14I	CCWWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	691
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	5 cut(s)	60, 310, 436, 495, 866
FaqI	GGGAC	1 cut(s)	968
FatI	CATG	5 cut(s)	56, 306, 432, 491, 862
FauNDI	CATATG	1 cut(s)	598
Fnu4HI	GCNGC	3 cut(s)	438, 543, 620
FokI	GGATG	2 cut(s)	243, 816
Fsp4HI	GCNGC	3 cut(s)	438, 543, 620
GluI	GCNGC	3 cut(s)	438, 543, 620
HapII	CCGG	1 cut(s)	260
Hin1II	CATG	5 cut(s)	60, 310, 436, 495, 866
HinfI	GANTC	3 cut(s)	301, 655, 984
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	3 cut(s)	76, 592, 781
Hpy188I	TCNGA	7 cut(s)	300, 340, 502, 535, 654, 810, 834
Hpy188III	TCNNGA	4 cut(s)	110, 409, 661, 674
HpyAV	CCTTC	8 cut(s)	10, 230, 520, 762, 882, 941, 967, 973
HpyCH4III	ACNGT	2 cut(s)	106, 640
HpyCH4V	TGCA	5 cut(s)	356, 440, 619, 689, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	619
HpyF3I	CTNAG	1 cut(s)	950
Hsp92II	CATG	5 cut(s)	60, 310, 436, 495, 866
Kzo9I	GATC	3 cut(s)	121, 349, 502
LmnI	GCTCC	2 cut(s)	35, 158
Lsp1109I	GCAGC	3 cut(s)	424, 529, 631
LweI	GCATC	2 cut(s)	263, 658
MabI	ACCWGGT	1 cut(s)	576
MaeIII	GTNAC	6 cut(s)	28, 75, 110, 580, 679, 787
MalI	GATC	3 cut(s)	123, 351, 504
MbiI	CCGCTC	1 cut(s)	613
MboI	GATC	3 cut(s)	121, 349, 502
MboII	GAAGA	7 cut(s)	79, 212, 287, 420, 468, 777, 823
MhlI	GDGCHC	1 cut(s)	845
MluCI	AATT	3 cut(s)	395, 551, 631
MmeI	TCCRAC	3 cut(s)	425, 857, 918
Mph1103I	ATGCAT	1 cut(s)	691
MroXI	GAANNNNTTC	3 cut(s)	171, 825, 983
MseI	TTAA	5 cut(s)	372, 381, 422, 464, 630
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	578
MvaI	CCWGG	1 cut(s)	578
MwoI	GCNNNNNNNGC	1 cut(s)	619
NcoI	CCATGG	1 cut(s)	432
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	3 cut(s)	121, 349, 502
NlaIII	CATG	5 cut(s)	60, 310, 436, 495, 866
NlaIV	GGNNCC	1 cut(s)	609
NmeAIII	GCCGAG	1 cut(s)	704
NmuCI	GTSAC	3 cut(s)	110, 580, 787
NsiI	ATGCAT	1 cut(s)	691
PaeR7I	CTCGAG	1 cut(s)	989
PdmI	GAANNNNTTC	3 cut(s)	171, 825, 983
PfeI	GAWTC	3 cut(s)	301, 655, 984
PkrI	GCNGC	3 cut(s)	439, 544, 621
Psp6I	CCWGG	1 cut(s)	576
PspEI	GGTNACC	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	1 cut(s)	609
PspPI	GGNCC	1 cut(s)	608
PspXI	VCTCGAGB	1 cut(s)	989
PstI	CTGCAG	2 cut(s)	358, 442
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SaqAI	TTAA	5 cut(s)	372, 381, 422, 464, 630
SatI	GCNGC	3 cut(s)	438, 543, 620
Sau3AI	GATC	3 cut(s)	121, 349, 502
Sau96I	GGNCC	1 cut(s)	608
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	1 cut(s)	845
SexAI	ACCWGGT	1 cut(s)	576
SfaNI	GCATC	2 cut(s)	263, 658
SfcI	CTRYAG	2 cut(s)	354, 438
Sfr274I	CTCGAG	1 cut(s)	989
SinI	GGWCC	1 cut(s)	608
SlaI	CTCGAG	1 cut(s)	989
SmlI	CTYRAG	2 cut(s)	659, 989
SmoI	CTYRAG	2 cut(s)	659, 989
Sse9I	AATT	3 cut(s)	395, 551, 631
SsiI	CCGC	2 cut(s)	6, 611
StyD4I	CCNGG	1 cut(s)	576
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	106, 640
TaqI	TCGA	1 cut(s)	990
TasI	AATT	3 cut(s)	395, 551, 631
TfiI	GAWTC	3 cut(s)	301, 655, 984
Tru1I	TTAA	5 cut(s)	372, 381, 422, 464, 630
Tru9I	TTAA	5 cut(s)	372, 381, 422, 464, 630
TscAI	CASTG	2 cut(s)	643, 709
TseFI	GTSAC	3 cut(s)	110, 580, 787
TseI	GCWGC	3 cut(s)	437, 542, 619
Tsp45I	GTSAC	3 cut(s)	110, 580, 787
TspDTI	ATGAA	7 cut(s)	37, 45, 164, 261, 501, 576, 818
TspGWI	ACGGA	1 cut(s)	924
TspRI	CASTG	2 cut(s)	643, 709
VpaK11BI	GGWCC	1 cut(s)	608
XapI	RAATTY	2 cut(s)	395, 551
XhoI	CTCGAG	1 cut(s)	989
XmnI	GAANNNNTTC	3 cut(s)	171, 825, 983
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.