Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005944

Physical Location & Seq

Genomic Coordinates Reverse (-)

30644698 .. 30646661

Gene Structure 1964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG140700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCCTTATATTTTGGATATTGAAGACAATTTTCTGAAAGATCGATGGTCCTGGAAAATTGAAAAAACCACACACACACAGCCGTCCCTCTCCTCTCAAACCCTACCTCACGCGCACACACACAGAGCTCCACCGCAGCTGCTCCGCCATGGGACGAGTCCGCACCAAGACCGTGAAGAAGTCCTCCTGGCAGGTGATCGAGCGGTACTACTCGCGCATGACCCTCGACTTCCACACCAACAAGAAGGTCCTGGAGGATCTGCAAAAGTCCCGTCGAAGCGCCTCCGCAACAAGATCGCCGGATTCTCGACCCATCTCATGAAGCGCATCCAGAAGGGCCCCGTCCGCGTCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTTGTCCCCGACGAGTTCGCCATGAAGACCGACGAGATCGCAGTCGACAAGGTGACCCTCGACATGCTCACTGCTCTCGGCATGGCGGATATTCCCGGAGTCAAGAAGGTGGATCCCTCTGATCTCCAGACTGCGCCGATCGGGTACGGCCCCAGGAGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

186

Amino Acids

21.09

Weight (kDa)

9.15

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	88 - 170	3.2e-31	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005944)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023647 RLG00000023653 RLG00000023665
rosa_multiflora	Rmu_sc0000968.1_g000012 Rmu_sc0001262.1_g000012 Rmu_sc0001518.1_g000014 Rmu_sc0002766.1_g000007 Rmu_sc0003078.1_g000002 Rmu_sc0005657.1_g000062 Rmu_sc0005657.1_g000063 Rmu_sc0012126.1_g000001 Rmu_sc0030925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108950 Rroxscaffold_6G00403400
rosa_rugosa	Rorug01G0021800 Rorug01G0146300.1 Rorug03G0358800.1 Rorug05G0241400 Rorug07G0101300
rosa_samantha	Rh1AG149600 Rh1BG381400 Rh1CG140700 Rh1CG395300 Rh3AG216500 Rh3AG217400 Rh3BG249600 Rh3CG245900 Rh6DG353100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	4 cut(s)	113, 215, 348, 381
AciI	CCGC	8 cut(s)	134, 145, 161, 203, 286, 346, 388, 482
AclWI	GGATC	3 cut(s)	265, 503, 516
AfaI	GTAC	3 cut(s)	207, 542, 557
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	23, 62
AjnI	CCWGG	5 cut(s)	50, 186, 250, 366, 548
AluBI	AGCT	3 cut(s)	128, 139, 364
AluI	AGCT	3 cut(s)	128, 139, 364
Alw21I	GWGCWC	1 cut(s)	130
AlwI	GGATC	3 cut(s)	265, 503, 516
AoxI	GGCC	2 cut(s)	337, 544
ApaI	GGGCCC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	136, 139
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AspLEI	GCGC	7 cut(s)	115, 217, 282, 327, 381, 387, 532
AspS9I	GGNCC	5 cut(s)	48, 248, 337, 338, 545
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	2 cut(s)	206, 460
AvaII	GGWCC	2 cut(s)	48, 248
BaeGI	GKGCMC	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	508
BanII	GRGCYC	2 cut(s)	130, 341
BbsI	GAAGAC	2 cut(s)	30, 428
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	126, 148
BccI	CCATC	2 cut(s)	39, 321
BceAI	ACGGC	2 cut(s)	67, 559
BcgI	CGANNNNNNTGC	4 cut(s)	206, 240, 277, 311
BciT130I	CCWGG	5 cut(s)	52, 188, 252, 368, 550
BcnI	CCSGG	1 cut(s)	492
BfaI	CTAG	1 cut(s)	559
BfoI	RGCGCY	2 cut(s)	283, 388
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	3 cut(s)	137, 140, 388
BlsI	GCNGC	3 cut(s)	138, 141, 389
Bme1390I	CCNGG	6 cut(s)	52, 188, 252, 368, 492, 550
Bme18I	GGWCC	2 cut(s)	48, 248
BmgT120I	GGNCC	5 cut(s)	48, 248, 337, 338, 545
BmiI	GGNNCC	4 cut(s)	339, 340, 510, 547
BmrFI	CCNGG	6 cut(s)	52, 188, 252, 368, 492, 550
BmsI	GCATC	1 cut(s)	336
BpiI	GAAGAC	2 cut(s)	30, 428
BpmI	CTGGAG	3 cut(s)	273, 350, 506
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	492
Bsa29I	ATCGAT	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	148, 548
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
BseBI	CCWGG	5 cut(s)	52, 188, 252, 368, 550
BseCI	ATCGAT	1 cut(s)	43
BseDI	CCNNGG	2 cut(s)	148, 548
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseRI	GAGGAG	3 cut(s)	82, 386, 389
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	126, 148
Bsh1236I	CGCG	4 cut(s)	113, 215, 348, 381
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	339, 546
BshVI	ATCGAT	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	300, 492
BslFI	GGGAC	4 cut(s)	70, 166, 254, 386
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmFI	GGGAC	4 cut(s)	70, 166, 254, 386
BsnI	GGCC	2 cut(s)	339, 546
Bsp120I	GGGCCC	1 cut(s)	337
Bsp1286I	GDGCHC	2 cut(s)	130, 341
Bsp143I	GATC	8 cut(s)	40, 196, 257, 294, 432, 508, 517, 534
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	8 cut(s)	134, 145, 161, 203, 286, 346, 388, 482
BspANI	GGCC	2 cut(s)	339, 546
BspDI	ATCGAT	1 cut(s)	43
BspFNI	CGCG	4 cut(s)	113, 215, 348, 381
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	4 cut(s)	339, 340, 510, 547
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	3 cut(s)	265, 503, 516
BsrBI	CCGCTC	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	148, 548
BssMI	GATC	8 cut(s)	40, 196, 257, 294, 432, 508, 517, 534
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	5 cut(s)	52, 188, 252, 368, 550
Bst4CI	ACNGT	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	383
BstDSI	CCRYGG	1 cut(s)	148
BstEII	GGTNACC	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	4 cut(s)	113, 215, 348, 381
BstH2I	RGCGCY	2 cut(s)	283, 388
BstHHI	GCGC	7 cut(s)	115, 217, 282, 327, 381, 387, 532
BstKTI	GATC	8 cut(s)	43, 199, 260, 297, 435, 511, 520, 537
BstMBI	GATC	8 cut(s)	40, 196, 257, 294, 432, 508, 517, 534
BstMCI	CGRYCG	1 cut(s)	537
BstMWI	GCNNNNNNNGC	2 cut(s)	345, 387
BstNI	CCWGG	5 cut(s)	52, 188, 252, 368, 550
BstNSI	RCATGY	1 cut(s)	463
BstPI	GGTNACC	1 cut(s)	448
BstSCI	CCNGG	6 cut(s)	50, 186, 250, 366, 490, 548
BstSLI	GKGCMC	1 cut(s)	341
BstUI	CGCG	4 cut(s)	113, 215, 348, 381
BstV1I	GCAGC	2 cut(s)	126, 148
BstV2I	GAAGAC	2 cut(s)	30, 428
BstX2I	RGATCY	2 cut(s)	257, 508
BstYI	RGATCY	2 cut(s)	257, 508
Bsu15I	ATCGAT	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	339, 546
BsuTUI	ATCGAT	1 cut(s)	43
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	465
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	383
CciI	TCATGA	1 cut(s)	318
CfoI	GCGC	7 cut(s)	115, 217, 282, 327, 381, 387, 532
Cfr13I	GGNCC	5 cut(s)	48, 248, 337, 338, 545
ClaI	ATCGAT	1 cut(s)	43
CseI	GACGC	1 cut(s)	337
Csp6I	GTAC	3 cut(s)	206, 541, 556
CviAII	CATG	7 cut(s)	149, 218, 319, 391, 418, 460, 478
CviJI	RGCY	6 cut(s)	82, 128, 139, 339, 364, 546
CviKI_1	RGCY	6 cut(s)	82, 128, 139, 339, 364, 546
CviQI	GTAC	3 cut(s)	206, 541, 556
DpnI	GATC	8 cut(s)	42, 198, 259, 296, 434, 510, 519, 536
DpnII	GATC	8 cut(s)	40, 196, 257, 294, 432, 508, 517, 534
EciI	GGCGGA	2 cut(s)	134, 497
Ecl136II	GAGCTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	2 cut(s)	130, 341
Eco47I	GGWCC	2 cut(s)	48, 248
Eco53kI	GAGCTC	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	128
EcoO109I	RGGNCCY	3 cut(s)	248, 337, 338
EcoO65I	GGTNACC	1 cut(s)	448
EcoRII	CCWGG	5 cut(s)	50, 186, 250, 366, 548
EcoT14I	CCWWGG	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	130, 341
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	7 cut(s)	152, 221, 322, 394, 421, 463, 481
FaiI	YATR	8 cut(s)	9, 150, 219, 320, 392, 419, 461, 479
FaqI	GGGAC	4 cut(s)	70, 166, 254, 386
FatI	CATG	7 cut(s)	148, 217, 318, 390, 417, 459, 477
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	137, 140, 388
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	2 cut(s)	130, 341
Fsp4HI	GCNGC	3 cut(s)	137, 140, 388
FspBI	CTAG	1 cut(s)	559
GlaI	GCGC	7 cut(s)	114, 216, 281, 326, 380, 386, 531
GluI	GCNGC	3 cut(s)	137, 140, 388
GsuI	CTGGAG	3 cut(s)	273, 350, 506
HaeII	RGCGCY	2 cut(s)	283, 388
HaeIII	GGCC	2 cut(s)	339, 546
HapII	CCGG	2 cut(s)	300, 492
HgaI	GACGC	1 cut(s)	337
HhaI	GCGC	7 cut(s)	115, 217, 282, 327, 381, 387, 532
Hin1II	CATG	7 cut(s)	152, 221, 322, 394, 421, 463, 481
Hin6I	GCGC	7 cut(s)	113, 215, 280, 325, 379, 385, 530
HinP1I	GCGC	7 cut(s)	113, 215, 280, 325, 379, 385, 530
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	3 cut(s)	157, 303, 495
HpaII	CCGG	2 cut(s)	300, 492
HphI	GGTGA	2 cut(s)	206, 460
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	2 cut(s)	36, 517
Hpy188III	TCNNGA	5 cut(s)	307, 319, 331, 499, 523
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	3 cut(s)	277, 410, 431
HpyAV	CCTTC	3 cut(s)	239, 328, 496
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	345, 387
Hsp92II	CATG	7 cut(s)	152, 221, 322, 394, 421, 463, 481
HspAI	GCGC	7 cut(s)	113, 215, 280, 325, 379, 385, 530
Kzo9I	GATC	8 cut(s)	40, 196, 257, 294, 432, 508, 517, 534
LmnI	GCTCC	4 cut(s)	133, 147, 369, 376
Lsp1109I	GCAGC	2 cut(s)	126, 148
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	559
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	8 cut(s)	42, 198, 259, 296, 434, 510, 519, 536
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	8 cut(s)	40, 196, 257, 294, 432, 508, 517, 534
MboII	GAAGA	3 cut(s)	35, 188, 433
MflI	RGATCY	2 cut(s)	257, 508
MhlI	GDGCHC	2 cut(s)	130, 341
MluCI	AATT	2 cut(s)	28, 57
MlyI	GAGTC	2 cut(s)	166, 504
MspA1I	CMGCKG	1 cut(s)	139
MspI	CCGG	2 cut(s)	300, 492
MspR9I	CCNGG	6 cut(s)	52, 188, 252, 368, 492, 550
MvaI	CCWGG	5 cut(s)	52, 188, 252, 368, 550
MvnI	CGCG	4 cut(s)	113, 215, 348, 381
MwoI	GCNNNNNNNGC	2 cut(s)	345, 387
NciI	CCSGG	1 cut(s)	492
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	8 cut(s)	40, 196, 257, 294, 432, 508, 517, 534
NlaIII	CATG	7 cut(s)	152, 221, 322, 394, 421, 463, 481
NlaIV	GGNNCC	4 cut(s)	339, 340, 510, 547
NmeAIII	GCCGAG	1 cut(s)	453
NmuCI	GTSAC	1 cut(s)	448
NspI	RCATGY	1 cut(s)	463
PagI	TCATGA	1 cut(s)	318
PaqCI	CACCTGC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	303
PflFI	GACNNNGTC	1 cut(s)	398
PfoI	TCCNGGA	4 cut(s)	50, 250, 366, 490
PkrI	GCNGC	3 cut(s)	138, 141, 389
Ple19I	CGATCG	1 cut(s)	537
PleI	GAGTC	2 cut(s)	165, 503
PpsI	GAGTC	2 cut(s)	165, 503
PpuMI	RGGWCCY	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	248
Psp6I	CCWGG	5 cut(s)	50, 186, 250, 366, 548
PspEI	GGTNACC	1 cut(s)	448
PspGI	CCWGG	5 cut(s)	50, 186, 250, 366, 548
PspN4I	GGNNCC	4 cut(s)	339, 340, 510, 547
PspOMI	GGGCCC	1 cut(s)	337
PspPI	GGNCC	5 cut(s)	48, 248, 337, 338, 545
PspPPI	RGGWCCY	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	257, 508
PsyI	GACNNNGTC	1 cut(s)	398
PvuI	CGATCG	1 cut(s)	537
PvuII	CAGCTG	1 cut(s)	139
RsaI	GTAC	3 cut(s)	207, 542, 557
RsaNI	GTAC	3 cut(s)	206, 541, 556
SacI	GAGCTC	1 cut(s)	130
SalI	GTCGAC	1 cut(s)	440
SatI	GCNGC	3 cut(s)	137, 140, 388
Sau3AI	GATC	8 cut(s)	40, 196, 257, 294, 432, 508, 517, 534
Sau96I	GGNCC	5 cut(s)	48, 248, 337, 338, 545
SchI	GAGTC	2 cut(s)	166, 504
ScrFI	CCNGG	6 cut(s)	52, 188, 252, 368, 492, 550
SduI	GDGCHC	2 cut(s)	130, 341
SetI	ASST	9 cut(s)	109, 130, 141, 196, 250, 366, 450, 507, 557
SfaNI	GCATC	1 cut(s)	336
SinI	GGWCC	2 cut(s)	48, 248
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	2 cut(s)	28, 57
SsiI	CCGC	8 cut(s)	134, 145, 161, 203, 286, 346, 388, 482
SspMI	CTAG	1 cut(s)	559
SstI	GAGCTC	1 cut(s)	130
StyD4I	CCNGG	6 cut(s)	50, 186, 250, 366, 490, 548
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	7 cut(s)	43, 199, 226, 275, 308, 441, 456
TaqII	GACCGA	1 cut(s)	440
TasI	AATT	2 cut(s)	28, 57
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	303
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	2 cut(s)	136, 139
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	2 cut(s)	335, 434
TspRI	CASTG	1 cut(s)	472
Tth111I	GACNNNGTC	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	48, 248
XceI	RCATGY	1 cut(s)	463
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.