Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005944

Physical Location & Seq

Genomic Coordinates Forward (+)

51052335 .. 51052496

Gene Structure 162 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG381400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGAAGCGCATCCAGAAGGGCCCCGTCCGCGGCATTTCCCTAAAGCTCCAGGAGGAGGAGTGCGAGCGCCGCATGGACTTTGTCCCCGACGAGTCCGCCATGAAGACTGACGAGATCGCCGTCGACAAGGAGACCGTCGATCAAGAAGGTGGATCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S17e

Protein Analysis

53

Amino Acids

6.02

Weight (kDa)

4.68

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	1 - 47	3.2e-16	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005944)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023647 RLG00000023653 RLG00000023665
rosa_multiflora	Rmu_sc0000968.1_g000012 Rmu_sc0001262.1_g000012 Rmu_sc0001518.1_g000014 Rmu_sc0002766.1_g000007 Rmu_sc0003078.1_g000002 Rmu_sc0005657.1_g000062 Rmu_sc0005657.1_g000063 Rmu_sc0012126.1_g000001 Rmu_sc0030925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108950 Rroxscaffold_6G00403400
rosa_rugosa	Rorug01G0021800 Rorug01G0146300.1 Rorug03G0358800.1 Rorug05G0241400 Rorug07G0101300
rosa_samantha	Rh1AG149600 Rh1BG381400 Rh1CG140700 Rh1CG395300 Rh3AG216500 Rh3AG217400 Rh3BG249600 Rh3CG245900 Rh6DG353100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	30
AciI	CCGC	4 cut(s)	28, 30, 70, 96
AclWI	GGATC	2 cut(s)	147, 160
AfiI	CCNNNNNNNGG	2 cut(s)	29, 55
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	147, 160
AoxI	GGCC	1 cut(s)	19
ApaI	GGGCCC	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	9, 69
AspS9I	GGNCC	2 cut(s)	19, 20
BaeGI	GKGCMC	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	125
BfoI	RGCGCY	1 cut(s)	70
BisI	GCNGC	2 cut(s)	31, 70
BlsI	GCNGC	2 cut(s)	32, 71
Bme1390I	CCNGG	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	19, 20
BmiI	GGNNCC	3 cut(s)	21, 22, 154
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 55
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	9
BseLI	CCNNNNNNNGG	2 cut(s)	29, 55
BseRI	GAGGAG	2 cut(s)	68, 71
BseSI	GKGCMC	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	29, 55
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	21
Bso31I	GGTCTC	1 cut(s)	125
Bsp120I	GGGCCC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	114, 139, 152
BspACI	CCGC	4 cut(s)	28, 30, 70, 96
BspANI	GGCC	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	3 cut(s)	21, 22, 154
BspPI	GGATC	2 cut(s)	147, 160
BspTNI	GGTCTC	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	3 cut(s)	114, 139, 152
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	65
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	9
BstFNI	CGCG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	9, 69
BstKTI	GATC	3 cut(s)	117, 142, 155
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	3 cut(s)	114, 139, 152
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 69
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	23
BstUI	CGCG	1 cut(s)	30
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	9
Cac8I	GCNNGC	1 cut(s)	65
CfoI	GCGC	2 cut(s)	9, 69
Cfr13I	GGNCC	2 cut(s)	19, 20
Cfr42I	CCGCGG	1 cut(s)	31
CviAII	CATG	2 cut(s)	73, 100
CviJI	RGCY	2 cut(s)	21, 46
CviKI_1	RGCY	2 cut(s)	21, 46
DpnI	GATC	3 cut(s)	116, 141, 154
DpnII	GATC	3 cut(s)	114, 139, 152
EciI	GGCGGA	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	125
EcoO109I	RGGNCCY	2 cut(s)	19, 20
EcoRII	CCWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	23
FaeI	CATG	2 cut(s)	76, 103
FaiI	YATR	2 cut(s)	74, 101
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	2 cut(s)	72, 99
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	31, 70
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	31, 70
GlaI	GCGC	2 cut(s)	8, 68
GluI	GCNGC	2 cut(s)	31, 70
GsuI	CTGGAG	1 cut(s)	32
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	21
HhaI	GCGC	2 cut(s)	9, 69
Hin1II	CATG	2 cut(s)	76, 103
Hin6I	GCGC	2 cut(s)	7, 67
HinP1I	GCGC	2 cut(s)	7, 67
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	161
Hpy188III	TCNNGA	2 cut(s)	13, 143
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	3 cut(s)	92, 125, 140
HpyAV	CCTTC	2 cut(s)	10, 140
HpyCH4III	ACNGT	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 69
Hsp92II	CATG	2 cut(s)	76, 103
HspAI	GCGC	2 cut(s)	7, 67
KspI	CCGCGG	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	114, 139, 152
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	3 cut(s)	26, 35, 62
LweI	GCATC	1 cut(s)	18
MalI	GATC	3 cut(s)	116, 141, 154
MboI	GATC	3 cut(s)	114, 139, 152
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	23
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	2 cut(s)	46, 49
MspA1I	CMGCKG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	27, 69
NdeII	GATC	3 cut(s)	114, 139, 152
NlaIII	CATG	2 cut(s)	76, 103
NlaIV	GGNNCC	3 cut(s)	21, 22, 154
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PflFI	GACNNNGTC	1 cut(s)	80
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	32, 71
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	3 cut(s)	21, 22, 154
PspOMI	GGGCCC	1 cut(s)	19
PspPI	GGNCC	2 cut(s)	19, 20
PsuI	RGATCY	1 cut(s)	152
PsyI	GACNNNGTC	1 cut(s)	80
SacII	CCGCGG	1 cut(s)	31
SalI	GTCGAC	1 cut(s)	122
SatI	GCNGC	2 cut(s)	31, 70
Sau3AI	GATC	3 cut(s)	114, 139, 152
Sau96I	GGNCC	2 cut(s)	19, 20
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	2 cut(s)	48, 151
SfaNI	GCATC	1 cut(s)	18
Sfr303I	CCGCGG	1 cut(s)	31
SgrBI	CCGCGG	1 cut(s)	31
SsiI	CCGC	4 cut(s)	28, 30, 70, 96
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	2 cut(s)	123, 138
TauI	GCSGC	2 cut(s)	33, 72
TspDTI	ATGAA	2 cut(s)	17, 116
Tth111I	GACNNNGTC	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.