Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005944

Physical Location & Seq

Genomic Coordinates Reverse (-)

25859682 .. 25868858

Gene Structure 9177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTTAGTTTTGGCAACAAGGTGCTTGAAATGGCTACAGCGACCTACCAACCTCCACCACTATAAGCTATACAAAAATTACTTGCAAGATCCCAAATCCGCTCCCGAGCCGCTGCCACCAATTGAAGGGACATACATTTGCTATGGTGCTACTTACACTACGGATGACGTGCTTCCAAGCTTGGAAGAACAAGGAACCTACAGGCTAGTTAACTGTACCCAAAAGGCCCAAATATTGGTTAATAAGACTCTTCTCTCGACCATCACAATATGCAAGGAGAGTGGAAGAAATATTTCTTATATTCAAGAACTTGCATCATCTTATGAGCTCATTGCACCCTCATCAGAAAACCCCAGAAAGCCATCGTCAATGGCGGTCTCCGAGGAGGAGTGTTCCTCCGCCAACTCCAGATCATCCTCCTCCTCCACCTCCAGCACCTCTCACTACCTCTCCAAGTGCCTCCTCCGTGGCACCGTCGTTCTCCACGTCCTCCACGGTCACATCCGCTTCCCCAACTCCCGCGACATCGTTTTCGGCAAGGTCTTCCCCCTCTCTCTCTTTCTCTCCGTTCTCGTTTTAGTTCTGATTTTGTTGGAATTAGAAACAGAGATGATCCGATATGTGATCCTTGACATTTCAGGAGAAATCGATAGAGTTGGTGATAATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

223

Amino Acids

25.01

Weight (kDa)

7.0

Isoelectric Point (pI)

58.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005944)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023647 RLG00000023653 RLG00000023665
rosa_multiflora	Rmu_sc0000968.1_g000012 Rmu_sc0001262.1_g000012 Rmu_sc0001518.1_g000014 Rmu_sc0002766.1_g000007 Rmu_sc0003078.1_g000002 Rmu_sc0005657.1_g000062 Rmu_sc0005657.1_g000063 Rmu_sc0012126.1_g000001 Rmu_sc0030925.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108950 Rroxscaffold_6G00403400
rosa_rugosa	Rorug01G0021800 Rorug01G0146300.1 Rorug03G0358800.1 Rorug05G0241400 Rorug07G0101300
rosa_samantha	Rh1AG149600 Rh1BG381400 Rh1CG140700 Rh1CG395300 Rh3AG216500 Rh3AG217400 Rh3BG249600 Rh3CG245900 Rh6DG353100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccBSI	CCGCTC	1 cut(s)	101
AccII	CGCG	1 cut(s)	522
AciI	CCGC	6 cut(s)	99, 110, 374, 399, 505, 520
AclWI	GGATC	3 cut(s)	83, 607, 619
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	2 cut(s)	125, 235
AgsI	TTSAA	3 cut(s)	28, 125, 305
AjiI	CACGTC	2 cut(s)	169, 487
AluBI	AGCT	3 cut(s)	67, 180, 328
AluI	AGCT	3 cut(s)	67, 180, 328
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	382
AlwI	GGATC	3 cut(s)	83, 607, 619
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	112
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
Asp700I	GAANNNNTTC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	671
AvaI	CYCGRG	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	2 cut(s)	269, 370
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	1 cut(s)	206
BfmI	CTRYAG	2 cut(s)	35, 199
BisI	GCNGC	2 cut(s)	110, 113
BlsI	GCNGC	2 cut(s)	111, 114
BmeT110I	CYCGRG	1 cut(s)	104
BmgBI	CACGTC	2 cut(s)	169, 487
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	196, 472
BmsI	GCATC	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	535
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
BpmI	CTGGAG	2 cut(s)	391, 415
Bsa29I	ATCGAT	1 cut(s)	648
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	3 cut(s)	381, 466, 493
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 235
Bse3DI	GCAATG	1 cut(s)	330
BseCI	ATCGAT	1 cut(s)	648
BseDI	CCNNGG	3 cut(s)	381, 466, 493
BseGI	GGATG	3 cut(s)	169, 413, 501
BseLI	CCNNNNNNNGG	2 cut(s)	125, 235
BseMI	GCAATG	1 cut(s)	330
BseRI	GAGGAG	5 cut(s)	398, 401, 409, 412, 452
BseXI	GCAGC	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	522
BshFI	GGCC	1 cut(s)	227
BshNI	GGYRCC	1 cut(s)	470
BshVI	ATCGAT	1 cut(s)	648
BsiHKAI	GWGCWC	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	125, 235
BsmAI	GTCTC	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	382
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	4 cut(s)	88, 410, 612, 624
BspACI	CCGC	6 cut(s)	99, 110, 374, 399, 505, 520
BspANI	GGCC	1 cut(s)	227
BspDI	ATCGAT	1 cut(s)	648
BspFNI	CGCG	1 cut(s)	522
BspLI	GGNNCC	2 cut(s)	196, 472
BspPI	GGATC	3 cut(s)	83, 607, 619
BspT107I	GGYRCC	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	382
BsrBI	CCGCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	330
BssECI	CCNNGG	3 cut(s)	381, 466, 493
BssMI	GATC	4 cut(s)	88, 410, 612, 624
Bst4CI	ACNGT	3 cut(s)	215, 475, 497
Bst6I	CTCTTC	1 cut(s)	255
BstDSI	CCRYGG	2 cut(s)	466, 493
BstF5I	GGATG	3 cut(s)	169, 413, 501
BstFNI	CGCG	1 cut(s)	522
BstKTI	GATC	4 cut(s)	91, 413, 615, 627
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	4 cut(s)	88, 410, 612, 624
BstSFI	CTRYAG	2 cut(s)	35, 199
BstUI	CGCG	1 cut(s)	522
BstV1I	GCAGC	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	535
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
Bsu15I	ATCGAT	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	227
BsuTUI	ATCGAT	1 cut(s)	648
BtgI	CCRYGG	2 cut(s)	466, 493
BtrI	CACGTC	2 cut(s)	169, 487
BtsCI	GGATG	3 cut(s)	169, 413, 501
Cfr13I	GGNCC	1 cut(s)	226
ClaI	ATCGAT	1 cut(s)	648
Csp6I	GTAC	1 cut(s)	216
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviJI	RGCY	8 cut(s)	34, 67, 109, 180, 205, 227, 328, 361
CviKI_1	RGCY	8 cut(s)	34, 67, 109, 180, 205, 227, 328, 361
CviQI	GTAC	1 cut(s)	216
DpnI	GATC	4 cut(s)	90, 412, 614, 626
DpnII	GATC	4 cut(s)	88, 410, 612, 624
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	388
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	382
Eco53kI	GAGCTC	1 cut(s)	328
Eco88I	CYCGRG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	330
FaiI	YATR	8 cut(s)	63, 70, 133, 144, 271, 300, 324, 621
FaqI	GGGAC	1 cut(s)	142
FauI	CCCGC	1 cut(s)	527
Fnu4HI	GCNGC	2 cut(s)	110, 113
FokI	GGATG	3 cut(s)	176, 400, 488
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	110, 113
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	2 cut(s)	110, 113
GsuI	CTGGAG	2 cut(s)	391, 415
HaeIII	GGCC	1 cut(s)	227
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	1 cut(s)	247
HpaI	GTTAAC	1 cut(s)	211
HphI	GGTGA	1 cut(s)	671
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	4 cut(s)	346, 382, 585, 617
Hpy188III	TCNNGA	5 cut(s)	104, 256, 305, 408, 639
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	479
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	3 cut(s)	215, 475, 497
HpyCH4IV	ACGT	2 cut(s)	168, 486
HpyCH4V	TGCA	4 cut(s)	85, 273, 314, 335
HpySE526I	ACGT	2 cut(s)	168, 486
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	88, 410, 612, 624
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	5 cut(s)	187, 367, 421, 445, 624
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	2 cut(s)	168, 486
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	4 cut(s)	90, 412, 614, 626
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	4 cut(s)	88, 410, 612, 624
MboII	GAAGA	4 cut(s)	197, 242, 297, 535
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	3 cut(s)	76, 120, 596
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	573
MroXI	GAANNNNTTC	1 cut(s)	292
MseI	TTAA	2 cut(s)	210, 240
MspA1I	CMGCKG	1 cut(s)	112
MunI	CAATTG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	522
NdeII	GATC	4 cut(s)	88, 410, 612, 624
NlaIV	GGNNCC	2 cut(s)	196, 472
NmuCI	GTSAC	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	111, 114
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp124BI	GAGCTC	1 cut(s)	330
PspN4I	GGNNCC	2 cut(s)	196, 472
PspPI	GGNCC	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	210, 240
SatI	GCNGC	2 cut(s)	110, 113
Sau3AI	GATC	4 cut(s)	88, 410, 612, 624
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	330
SfaNI	GCATC	1 cut(s)	323
SfcI	CTRYAG	2 cut(s)	35, 199
Sse9I	AATT	3 cut(s)	76, 120, 596
SsiI	CCGC	6 cut(s)	99, 110, 374, 399, 505, 520
SspI	AATATT	2 cut(s)	234, 292
SspMI	CTAG	1 cut(s)	206
SstI	GAGCTC	1 cut(s)	330
TaaI	ACNGT	3 cut(s)	215, 475, 497
TaiI	ACGT	2 cut(s)	171, 489
TaqI	TCGA	2 cut(s)	257, 648
TasI	AATT	3 cut(s)	76, 120, 596
TauI	GCSGC	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	210, 240
Tru9I	TTAA	2 cut(s)	210, 240
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	497
TspGWI	ACGGA	3 cut(s)	176, 455, 556
Van91I	CCANNNNNTGG	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	292
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.