Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009649

Physical Location & Seq

Genomic Coordinates Forward (+)

48197904 .. 48198731

Gene Structure 828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025774

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGACCTCCTCAACCTTCAAGTGGCTCTACTCCTTGCTCGAGCCCTTACTCGAGTGCAGGGACCCGATTGGCTCCCCGCTCAATCTCTCCACCGACCTCCGCCTCGGAATCGGCCTGTTTCGCTTGGCCACCGGAGCCAATTACCCGGAGATATCAAGACAATTCCGGGTTTTGGAGTCTGTGTCGAGATTTTGCTCCAAGCAATTGTGTCGTGTTCTCTACAATTGTGTCGAGATTGAGTTTCTGAATAAGACTGAGCTTGAATCGGTGTCTTCGGGATTCGAAACCCACCCCGGGTTGCCCAATTACTGCGGTGTGATTGACTATACCCGGTTCAAGTTTGTGAGAATTATGCTAGACTGGTTCAATTCAATTCCATTGACAACGTACGCCATTCTCGACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

136

Amino Acids

15.54

Weight (kDa)

6.09

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009649)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05781
malus_domestica	MD05G1083600.v1.1
prunus_persica	Prupe.8G128000_v2.0.a1
pyrus_communis	pycom10g08050
rosa_chinensis	RchiOBHm_Chr6g0256701
rosa_laevigata	RLG00000014740 RLG00000025774
rosa_multiflora	Rmu_sc0004908.1_g000021 Rmu_sc0010161.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209110 Rroxscaffold_7G00209120
rosa_rugosa	Rorug05G0565800
rosa_samantha	Rh4CG107600 Rh6AG083800 Rh6BG078300 Rh6CG072900 Rh6DG070100 Rh7AG174500 Rh7BG177700 Rh7CG183700 Rh7DG177100
rosa_wichuraiana	Rw6G007530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	79
AciI	CCGC	3 cut(s)	77, 100, 312
AcoI	YGGCCR	1 cut(s)	126
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	3 cut(s)	21, 172, 294
AgsI	TTSAA	5 cut(s)	19, 263, 337, 367, 372
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Ama87I	CYCGRG	3 cut(s)	38, 50, 293
AoxI	GGCC	2 cut(s)	112, 126
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	5 cut(s)	146, 167, 294, 295, 331
AsuII	TTCGAA	1 cut(s)	282
AvaI	CYCGRG	3 cut(s)	38, 50, 293
AvaII	GGWCC	1 cut(s)	61
BalI	TGGCCA	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	264
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BcnI	CCSGG	5 cut(s)	146, 167, 294, 295, 331
BfaI	CTAG	1 cut(s)	356
Bme1390I	CCNGG	5 cut(s)	146, 167, 294, 295, 331
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	3 cut(s)	38, 50, 293
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	4 cut(s)	62, 63, 73, 136
BmrFI	CCNGG	5 cut(s)	146, 167, 294, 295, 331
BpiI	GAAGAC	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	282
BpuMI	CCSGG	5 cut(s)	146, 167, 294, 295, 331
BsaJI	CCNNGG	3 cut(s)	103, 292, 293
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 172, 294
Bse1I	ACTGG	1 cut(s)	365
BseDI	CCNNGG	3 cut(s)	103, 292, 293
BseLI	CCNNNNNNNGG	3 cut(s)	21, 172, 294
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	114, 128
BsiHKCI	CYCGRG	3 cut(s)	38, 50, 293
BsiSI	CCGG	5 cut(s)	132, 146, 166, 294, 331
BsiWI	CGTACG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	3 cut(s)	21, 172, 294
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	114, 128
BsoBI	CYCGRG	3 cut(s)	38, 50, 293
Bsp119I	TTCGAA	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	45
BspACI	CCGC	3 cut(s)	77, 100, 312
BspANI	GGCC	2 cut(s)	114, 128
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	4 cut(s)	62, 63, 73, 136
BspT104I	TTCGAA	1 cut(s)	282
BsrBI	CCGCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	3 cut(s)	103, 292, 293
BstBI	TTCGAA	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 134
BstSCI	CCNGG	5 cut(s)	144, 165, 292, 293, 329
BstV2I	GAAGAC	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	114, 128
Cfr13I	GGNCC	1 cut(s)	61
Cfr9I	CCCGGG	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	388
CviJI	RGCY	7 cut(s)	25, 43, 72, 114, 128, 137, 259
CviKI_1	RGCY	7 cut(s)	25, 43, 72, 114, 128, 137, 259
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	1 cut(s)	255
EaeI	YGGCCR	1 cut(s)	126
EciI	GGCGGA	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	61
Eco88I	CYCGRG	3 cut(s)	38, 50, 293
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	45
FaiI	YATR	2 cut(s)	327, 353
FaqI	GGGAC	1 cut(s)	74
FauI	CCCGC	1 cut(s)	84
FriOI	GRGCYC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	114, 128
HapII	CCGG	5 cut(s)	132, 146, 166, 294, 331
HinfI	GANTC	4 cut(s)	108, 176, 263, 279
HpaII	CCGG	5 cut(s)	132, 146, 166, 294, 331
Hpy188I	TCNGA	2 cut(s)	107, 246
Hpy188III	TCNNGA	5 cut(s)	156, 186, 232, 276, 398
HpyAV	CCTTC	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 134
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	386
KflI	GGGWCCC	1 cut(s)	61
LmnI	GCTCC	3 cut(s)	77, 134, 200
LpnPI	CCDG	8 cut(s)	43, 128, 145, 159, 179, 307, 344, 346
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	386
MbiI	CCGCTC	1 cut(s)	79
MboII	GAAGA	1 cut(s)	264
MfeI	CAATTG	2 cut(s)	203, 223
MhlI	GDGCHC	1 cut(s)	45
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	8 cut(s)	139, 161, 203, 223, 304, 348, 367, 372
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	16, 19, 107, 113
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	5 cut(s)	132, 146, 166, 294, 331
MspR9I	CCNGG	5 cut(s)	146, 167, 294, 295, 331
MunI	CAATTG	2 cut(s)	203, 223
MwoI	GCNNNNNNNGC	2 cut(s)	120, 134
NciI	CCSGG	5 cut(s)	146, 167, 294, 295, 331
NlaIV	GGNNCC	4 cut(s)	62, 63, 73, 136
NspV	TTCGAA	1 cut(s)	282
PaeR7I	CTCGAG	2 cut(s)	38, 50
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	108, 263, 279
Pfl23II	CGTACG	1 cut(s)	387
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	61
PspLI	CGTACG	1 cut(s)	387
PspN4I	GGNNCC	4 cut(s)	62, 63, 73, 136
PspPI	GGNCC	1 cut(s)	61
PspPPI	RGGWCCY	1 cut(s)	61
PspXI	VCTCGAGB	2 cut(s)	38, 50
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	5 cut(s)	146, 167, 294, 295, 331
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	5 cut(s)	8, 17, 99, 261, 389
Sfr274I	CTCGAG	2 cut(s)	38, 50
SfuI	TTCGAA	1 cut(s)	282
SinI	GGWCC	1 cut(s)	61
SlaI	CTCGAG	2 cut(s)	38, 50
SmaI	CCCGGG	1 cut(s)	295
SmlI	CTYRAG	2 cut(s)	38, 50
SmoI	CTYRAG	2 cut(s)	38, 50
Sse9I	AATT	8 cut(s)	139, 161, 203, 223, 304, 348, 367, 372
SsiI	CCGC	3 cut(s)	77, 100, 312
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	5 cut(s)	144, 165, 292, 293, 329
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	6 cut(s)	39, 51, 185, 231, 282, 399
TasI	AATT	8 cut(s)	139, 161, 203, 223, 304, 348, 367, 372
TfiI	GAWTC	3 cut(s)	108, 263, 279
TspMI	CCCGGG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	61
XhoI	CTCGAG	2 cut(s)	38, 50
XmaI	CCCGGG	1 cut(s)	293
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.