Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009649

Physical Location & Seq

Genomic Coordinates Reverse (-)

75856958 .. 75867065

Gene Structure 10108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0565800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2877 bp

ATGTTGAAACCCAGAGTATTTCACAAATCACAGTCTCTCTTTCTTCAGAACAAGCCGTTCATCCATGGAAGTAGAGGCAGCAGAACTTCACTTTCCGTCTGGTCAATAAGTTCTTCATTCCCCAACAAACACAAAAACCTTCGAGTTGGATCCAGTAACAATTACAACAACAACATAGAAGCCGTAAGTAGTACTAATAGTACTAGTAGCAGTAGCAGCAGCACTAGTAATACTAGCAACCCTGGACCGACGACCACGACAACGATAACCACTACTACTACCACTGAGGTGACGGAAGTGGTGACGGAGAATGAAGATGCAGCGGTCAAGAAAGAAGTAGAAGTAGTGACCACAAAAGAAGTAGTGAAGGAGAAGTTCATCAGTGTTAAAGCAACCATAACGGTGACGCTTACAGTTGGTGGGTTTCTGTCTCACATGGGTTTAGCTCGAGGACTTGATGATATAAAAGATTTGCTTGGCCAAACGCTCTTCATGGAGCTTCTTAGCGCTCACCTTGATCCCAAAACTGGATTAGAGAATGAGCCAGTTACAGGGTTCGCACACCGAAGTCGCCGAGTGGAGGGTGAGATTATATACGAGACAGATTTTAAAGTTCCATTAGATTTTGGGGAAGTGGGAGCCATTTTAATAGAGAATGAGCATCACAAGGAGATGCATCTCAAGGATATTGTCCTGGATGGCTTGCCTAATAGCCCTGTACTCCTCAGTTGTAATTCATGGATCCACTCCAAGTATGATAATCCAGCCAAGAGGGTCTTCTTCACTAACAAGTCATATTTGCCATCTCAAACTCCAAGTGCATTGGTGAGGCTAAGAGAAGAGGAGCTTGTGACATTGCGCGGCAATGGCCAAGGAGAGCGCAAGAGCTTTGAGAGAATATACGATTACGATGTTTACAATGATCTTGGGAATCCTGATTCGAGTCTAAAGCTTATAAGACCGGTTCTTGGAGGAAGCAAAGAATTCCCCTATCCCAGGCGATGTCGAACTGGGCGACCAATGAGTGAAGCAGATAAACATTCGGAGAAAAGGAGCAGCAAGGTGTACGTTCCTAGAGACGAAGCTTTCTCAGAGGTGAAGCAGTTAACATTTTCAGCAAAGACATTGTACGCTGTCATGCATGCAGTAGTACCGTCACTGGAGAACGCCATCACTGACACTAATCTTGGATTCACATTGTTCACGTCAATAGACACACTTTTCAATGAAGGCATTAAGTTGCCTCCAATTAACGAACAAGGGATTCTCCAAGCTATACTTCCTAGACTAGTAAATGCTTTGGCTTCTGGAGATGATGTTTTGCGGTTCGTGCCCCCAGAAACAATGAATAGAGACAAATTCTTCTGGTTTAGGGACGAGGAATTTGCTAGGCAGACTCTTGCCGGTCTCAACCCATATAGCATTAAGTTGGTGACGGAATGGCCATTGAAGAGTAAATTGGATCCCAACGTGTATGGTCCCCCAGAATCTGCAATTACCTCGGAAATGATTGAGCGAGAAATTAAAGGCTTTGCGACCATCAAAGAGGCCATAAGAGAAAAGAAGTTGTTCATACTAGATTACCATGATTTGTTTTTACCATACGTGAGCAAAGTACGAGAGATTGAAGGCACAACACTATATGGATCGAGGACATTGTTCTTCCTTAACCCAGAAGGCACCCTAAGGCCGCTGGCCATTGAGTTGACTCGACCGCCAATGGACGGGAAGCCTCAGTGGAAGCAAGCCTTCCAACCCAGCTGGAATGCTACCGGTGTCTGGCTTTGGAGGATTGCCAAAGCTCATGTCCTTGCTCATGACTCTGGTTACCATCAACTTGTTAGTCACTGGCTAAGAACGCATTGTGCCACAGAACCATATATAATCGCAACCAATCGTCAACTGAGTGTGTTGCACCCAATCTACAAATTGTTGCATCCCCATTTCAGATACACTATGGAGATCAATGCTCTTGCTCGTGAATCACTTATCAATGCCGGTGGCATCATTGAAACCTCATTCTCACCTAGAAAATATTCCATGGAGCTTTGCTCTATTGCCTATGCTAAGGAGTGGCGATTCGACCAAGAGGCTCTACCAGCCGACCTTATTCGCAGGGGCATGGCTGTTGAGGACCCAACTGCTTCCCACGGTCTGAGGCTATCGATTCAGGATTACCCTTTTGCCAATGATGGACTCCTCCTATGGGATGCCATTAAACAGTGGGTCTCTGACTATGTAAACCACTACTACAGAGAGTCCACCCTTGTACAAACTGATCAAGAGCTCCAAGCATGGTGGACAGAAATCAGAACAGTAGGTCACGGAGACAAGAAGGACGAACCCTGGTGGCCTGACCTAAATACCCCTCAAGACCTCATCGACATCCTCACAACAATGCTTTGGGTTACATCCGGTCACCATGCAGCAGTCAACTTTGGTCAGTATGCCTATGCAGGCTATTTCCCTAATCGCCCAACCATTGCAAGAACCAATGTGCCCACGGAGGACCCTGACGATGAGGTTTGGGAAATGTTCATGAAAAAACCCGAAGCTGCCCTTTTGCGGTGCTTTCCTTCGCAAATTCAAGCCACAACGATCATGGCGGTTTTAGACATTTTGTCTAGTCATTCGCCGGACGAGGAGTACATTGGAGAGAAGATGGAGGACGCGTGGGCTGAAGACGAAGTTATAAGGGCGGCGTTTGAGCGGTTTAAGGGGAGGCTGATAATGCTTGAACAAACTATTGATGAAAGAAATGCTAATTTTGAGTTGAAGAACAGAAATGGAGCTGGGGTTGTGCCTTATGAGCTTTTGAAACCCTTTTCAGAACCTGGGGTTACCGCGAAGGGTGTTCCATATAGCATCTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

958

Amino Acids

108.5

Weight (kDa)

5.94

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	199 - 261	1.3e-08	PLAT/LH2 domain
Lipoxygenase	PF00305	275 - 941	0.0	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009649)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05781
malus_domestica	MD05G1083600.v1.1
prunus_persica	Prupe.8G128000_v2.0.a1
pyrus_communis	pycom10g08050
rosa_chinensis	RchiOBHm_Chr6g0256701
rosa_laevigata	RLG00000014740 RLG00000025774
rosa_multiflora	Rmu_sc0004908.1_g000021 Rmu_sc0010161.1_g000023
rosa_roxburghii	Rroxscaffold_7G00209110 Rroxscaffold_7G00209120
rosa_rugosa	Rorug05G0565800
rosa_samantha	Rh4CG107600 Rh6AG083800 Rh6BG078300 Rh6CG072900 Rh6DG070100 Rh7AG174500 Rh7BG177700 Rh7CG183700 Rh7DG177100
rosa_wichuraiana	Rw6G007530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	956, 2693
AccB1I	GGYRCC	1 cut(s)	1679
AccBSI	CCGCTC	1 cut(s)	2710
AccII	CGCG	3 cut(s)	861, 2672, 2846
AclWI	GGATC	8 cut(s)	144, 157, 512, 736, 749, 1457, 1470, 1654
AcoI	YGGCCR	4 cut(s)	478, 868, 1442, 1695
AcsI	RAATTY	4 cut(s)	983, 1358, 1382, 2583
AcuI	CTGAAG	2 cut(s)	29, 2700
AfaI	GTAC	9 cut(s)	193, 202, 720, 1067, 1130, 1152, 1617, 2271, 2648
AfeI	AGCGCT	1 cut(s)	508
AfiI	CCNNNNNNNGG	9 cut(s)	527, 551, 580, 968, 996, 1724, 1779, 2206, 2565
AflIII	ACRYGT	2 cut(s)	1470, 2670
AgeI	ACCGGT	2 cut(s)	961, 1772
AgsI	TTSAA	9 cut(s)	7, 1225, 1450, 1628, 2012, 2588, 2738, 2776, 2818
AhdI	GACNNNNNGTC	1 cut(s)	2620
AhlI	ACTAGT	3 cut(s)	203, 224, 1288
AjiI	CACGTC	1 cut(s)	1206
AjnI	CCWGG	5 cut(s)	241, 693, 995, 2345, 2833
AjuI	GAANNNNNNNTTGG	6 cut(s)	761, 793, 1263, 1295, 1442, 1474
AleI	CACNNNNGTG	1 cut(s)	287
Alw21I	GWGCWC	1 cut(s)	2289
Alw26I	GTCTC	8 cut(s)	39, 435, 593, 1071, 1347, 1412, 2233, 2322
AlwI	GGATC	8 cut(s)	144, 157, 512, 736, 749, 1457, 1470, 1654
AlwNI	CAGNNNCTG	2 cut(s)	1490, 2834
Ama87I	CYCGRG	1 cut(s)	447
Aor51HI	AGCGCT	1 cut(s)	508
AoxI	GGCC	7 cut(s)	478, 868, 1442, 1548, 1688, 1695, 2351
ApeKI	GCWGC	7 cut(s)	78, 216, 219, 320, 1056, 2426, 2555
ApoI	RAATTY	4 cut(s)	983, 1358, 1382, 2583
ArsI	GACNNNNNNTTYG	4 cut(s)	1367, 1399, 1791, 1823
AsiGI	ACCGGT	2 cut(s)	961, 1772
Asp700I	GAANNNNTTC	2 cut(s)	1568, 2035
AspLEI	GCGC	3 cut(s)	509, 861, 882
AspS9I	GGNCC	4 cut(s)	245, 1478, 2134, 2509
AvaI	CYCGRG	1 cut(s)	447
AvaII	GGWCC	4 cut(s)	245, 1478, 2134, 2509
AxyI	CCTNAGG	1 cut(s)	1685
BaeGI	GKGCMC	2 cut(s)	1335, 2502
BalI	TGGCCA	4 cut(s)	480, 870, 1444, 1697
BamHI	GGATCC	3 cut(s)	149, 741, 1462
BanI	GGYRCC	1 cut(s)	1679
BanII	GRGCYC	1 cut(s)	2289
BauI	CACGAG	1 cut(s)	1977
BbsI	GAAGAC	2 cut(s)	769, 2688
Bbv12I	GWGCWC	1 cut(s)	2289
BbvI	GCAGC	7 cut(s)	90, 228, 231, 332, 1068, 2438, 2542
BccI	CCATC	7 cut(s)	692, 811, 1178, 1547, 1839, 2186, 2656
BceAI	ACGGC	2 cut(s)	40, 167
BcgI	CGANNNNNNTGC	4 cut(s)	1367, 1401, 1482, 1516
BciT130I	CCWGG	5 cut(s)	243, 695, 997, 2347, 2835
BclI	TGATCA	1 cut(s)	2278
BcoDI	GTCTC	8 cut(s)	39, 435, 593, 1071, 1347, 1412, 2233, 2322
BcuI	ACTAGT	3 cut(s)	203, 224, 1288
BfmI	CTRYAG	1 cut(s)	2251
BfoI	RGCGCY	1 cut(s)	510
BmcAI	AGTACT	2 cut(s)	193, 202
Bme1390I	CCNGG	5 cut(s)	243, 695, 997, 2347, 2835
Bme18I	GGWCC	4 cut(s)	245, 1478, 2134, 2509
BmeRI	GACNNNNNGTC	1 cut(s)	2620
BmeT110I	CYCGRG	1 cut(s)	447
BmgBI	CACGTC	1 cut(s)	1206
BmgT120I	GGNCC	4 cut(s)	245, 1478, 2134, 2509
BmiI	GGNNCC	8 cut(s)	151, 640, 743, 1464, 1480, 1681, 2136, 2511
BmrFI	CCNGG	5 cut(s)	243, 695, 997, 2347, 2835
BmrI	ACTGGG	1 cut(s)	1020
BmsI	GCATC	7 cut(s)	307, 663, 670, 685, 1945, 2013, 2200
BmuI	ACTGGG	1 cut(s)	1020
BpiI	GAAGAC	2 cut(s)	769, 2688
BplI	GAGNNNNNCTC	2 cut(s)	2036, 2068
BpmI	CTGGAG	2 cut(s)	1181, 1329
Bpu10I	CCTNAGC	1 cut(s)	2067
BpuEI	CTTGAG	2 cut(s)	665, 2355
Bsa29I	ATCGAT	1 cut(s)	2165
BsaAI	YACGTR	1 cut(s)	1606
BsaI	GGTCTC	2 cut(s)	1412, 2233
BsaWI	WCCGGW	3 cut(s)	961, 1772, 2414
BsaXI	ACNNNNNCTCC	6 cut(s)	1302, 1332, 2657, 2687, 2781, 2811
Bsc4I	CCNNNNNNNGG	9 cut(s)	527, 551, 580, 968, 996, 1724, 1779, 2206, 2565
Bse118I	RCCGGY	4 cut(s)	961, 1403, 1772, 1997
Bse1I	ACTGG	6 cut(s)	153, 532, 545, 1015, 1164, 1853
Bse21I	CCTNAGG	1 cut(s)	1685
Bse3DI	GCAATG	3 cut(s)	854, 871, 2481
BseBI	CCWGG	5 cut(s)	243, 695, 997, 2347, 2835
BseCI	ATCGAT	1 cut(s)	2165
BseGI	GGATG	6 cut(s)	60, 703, 1936, 2215, 2385, 2411
BseLI	CCNNNNNNNGG	9 cut(s)	527, 551, 580, 968, 996, 1724, 1779, 2206, 2565
BseMI	GCAATG	3 cut(s)	854, 871, 2481
BseMII	CTCAG	6 cut(s)	276, 739, 1104, 1748, 1895, 2147
BseNI	ACTGG	6 cut(s)	153, 532, 545, 1015, 1164, 1853
BseRI	GAGGAG	4 cut(s)	713, 857, 2189, 2657
BseSI	GKGCMC	2 cut(s)	1335, 2502
BseXI	GCAGC	7 cut(s)	90, 228, 231, 332, 1068, 2438, 2542
BseYI	CCCAGC	2 cut(s)	1757, 2792
Bsh1236I	CGCG	3 cut(s)	861, 2672, 2846
Bsh1285I	CGRYCG	1 cut(s)	1715
BshFI	GGCC	7 cut(s)	480, 870, 1444, 1550, 1690, 1697, 2353
BshNI	GGYRCC	1 cut(s)	1679
BshTI	ACCGGT	2 cut(s)	961, 1772
BshVI	ATCGAT	1 cut(s)	2165
BsiEI	CGRYCG	1 cut(s)	1715
BsiHKAI	GWGCWC	1 cut(s)	2289
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	6 cut(s)	962, 1404, 1773, 1998, 2415, 2636
BslFI	GGGAC	2 cut(s)	1388, 1464
BslI	CCNNNNNNNGG	9 cut(s)	527, 551, 580, 968, 996, 1724, 1779, 2206, 2565
BsmAI	GTCTC	8 cut(s)	39, 435, 593, 1071, 1347, 1412, 2233, 2322
BsmBI	CGTCTC	1 cut(s)	1071
BsmFI	GGGAC	2 cut(s)	1388, 1464
BsmI	GAATGC	1 cut(s)	1771
BsnI	GGCC	7 cut(s)	480, 870, 1444, 1550, 1690, 1697, 2353
Bso31I	GGTCTC	2 cut(s)	1412, 2233
BsoBI	CYCGRG	1 cut(s)	447
Bsp1286I	GDGCHC	3 cut(s)	1335, 2289, 2502
Bsp1407I	TGTACA	1 cut(s)	2269
Bsp143I	GATC	9 cut(s)	149, 517, 741, 922, 1462, 1646, 1962, 2278, 2598
Bsp19I	CCATGG	2 cut(s)	64, 2040
BspANI	GGCC	7 cut(s)	480, 870, 1444, 1550, 1690, 1697, 2353
BspCNI	CTCAG	6 cut(s)	277, 738, 1103, 1747, 1896, 2148
BspDI	ATCGAT	1 cut(s)	2165
BspFNI	CGCG	3 cut(s)	861, 2672, 2846
BspHI	TCATGA	2 cut(s)	1816, 2538
BspLI	GGNNCC	8 cut(s)	151, 640, 743, 1464, 1480, 1681, 2136, 2511
BspPI	GGATC	8 cut(s)	144, 157, 512, 736, 749, 1457, 1470, 1654
BspQI	GCTCTTC	1 cut(s)	494
BspT107I	GGYRCC	1 cut(s)	1679
BspTNI	GGTCTC	2 cut(s)	1412, 2233
BsrBI	CCGCTC	1 cut(s)	2710
BsrDI	GCAATG	3 cut(s)	854, 871, 2481
BsrFI	RCCGGY	4 cut(s)	961, 1403, 1772, 1997
BsrGI	TGTACA	1 cut(s)	2269
BsrI	ACTGG	6 cut(s)	153, 532, 545, 1015, 1164, 1853
BssAI	RCCGGY	4 cut(s)	961, 1403, 1772, 1997
BssMI	GATC	9 cut(s)	149, 517, 741, 922, 1462, 1646, 1962, 2278, 2598
BssSI	CACGAG	1 cut(s)	1977
BssT1I	CCWWGG	3 cut(s)	64, 871, 2040
Bst2BI	CACGAG	1 cut(s)	1977
Bst2UI	CCWGG	5 cut(s)	243, 695, 997, 2347, 2835
Bst4CI	ACNGT	7 cut(s)	33, 403, 415, 1155, 2153, 2223, 2317
Bst6I	CTCTTC	3 cut(s)	494, 834, 1445
BstAUI	TGTACA	1 cut(s)	2269
BstBAI	YACGTR	1 cut(s)	1606
BstC8I	GCNNGC	5 cut(s)	704, 1143, 1695, 1746, 2458
BstDSI	CCRYGG	4 cut(s)	64, 2040, 2149, 2502
BstEII	GGTNACC	3 cut(s)	1826, 2417, 2839
BstENI	CCTNNNNNAGG	1 cut(s)	994
BstF5I	GGATG	6 cut(s)	60, 703, 1936, 2215, 2385, 2411
BstFNI	CGCG	3 cut(s)	861, 2672, 2846
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	3 cut(s)	509, 861, 882
BstKTI	GATC	9 cut(s)	152, 520, 744, 925, 1465, 1649, 1965, 2281, 2601
BstMAI	GTCTC	8 cut(s)	39, 435, 593, 1071, 1347, 1412, 2233, 2322
BstMBI	GATC	9 cut(s)	149, 517, 741, 922, 1462, 1646, 1962, 2278, 2598
BstMCI	CGRYCG	1 cut(s)	1715
BstMWI	GCNNNNNNNGC	7 cut(s)	216, 867, 1330, 1858, 2099, 2731, 2809
BstNI	CCWGG	5 cut(s)	243, 695, 997, 2347, 2835
BstNSI	RCATGY	1 cut(s)	1145
BstPI	GGTNACC	3 cut(s)	1826, 2417, 2839
BstSCI	CCNGG	5 cut(s)	241, 693, 995, 2345, 2833
BstSFI	CTRYAG	1 cut(s)	2251
BstSLI	GKGCMC	2 cut(s)	1335, 2502
BstUI	CGCG	3 cut(s)	861, 2672, 2846
BstV1I	GCAGC	7 cut(s)	90, 228, 231, 332, 1068, 2438, 2542
BstV2I	GAAGAC	2 cut(s)	769, 2688
BstX2I	RGATCY	3 cut(s)	149, 741, 1462
BstYI	RGATCY	3 cut(s)	149, 741, 1462
Bsu15I	ATCGAT	1 cut(s)	2165
Bsu36I	CCTNAGG	1 cut(s)	1685
BsuRI	GGCC	7 cut(s)	480, 870, 1444, 1550, 1690, 1697, 2353
BsuTUI	ATCGAT	1 cut(s)	2165
BtgI	CCRYGG	4 cut(s)	64, 2040, 2149, 2502
BtgZI	GCGATG	1 cut(s)	1015
BtrI	CACGTC	1 cut(s)	1206
BtsCI	GGATG	6 cut(s)	60, 703, 1936, 2215, 2385, 2411
BtsIMutI	CAGTG	7 cut(s)	282, 388, 1157, 1173, 1742, 1846, 2228
Cac8I	GCNNGC	5 cut(s)	704, 1143, 1695, 1746, 2458
CaiI	CAGNNNCTG	2 cut(s)	1490, 2834
CciI	TCATGA	2 cut(s)	1816, 2538
CfoI	GCGC	3 cut(s)	509, 861, 882
Cfr10I	RCCGGY	4 cut(s)	961, 1403, 1772, 1997
Cfr13I	GGNCC	4 cut(s)	245, 1478, 2134, 2509
ClaI	ATCGAT	1 cut(s)	2165
CseI	GACGC	2 cut(s)	415, 2678
Csp6I	GTAC	9 cut(s)	192, 201, 719, 1066, 1129, 1151, 1616, 2270, 2647
CspAI	ACCGGT	2 cut(s)	961, 1772
CspCI	CAANNNNNGTGG	4 cut(s)	1981, 2016, 2279, 2314
CviQI	GTAC	9 cut(s)	192, 201, 719, 1066, 1129, 1151, 1616, 2270, 2647
DpnI	GATC	9 cut(s)	151, 519, 743, 924, 1464, 1648, 1964, 2280, 2600
DpnII	GATC	9 cut(s)	149, 517, 741, 922, 1462, 1646, 1962, 2278, 2598
DraI	TTTAAA	1 cut(s)	610
DriI	GACNNNNNGTC	1 cut(s)	2620
EaeI	YGGCCR	4 cut(s)	478, 868, 1442, 1695
Eam1104I	CTCTTC	3 cut(s)	494, 834, 1445
Eam1105I	GACNNNNNGTC	1 cut(s)	2620
EarI	CTCTTC	3 cut(s)	494, 834, 1445
Ecl136II	GAGCTC	1 cut(s)	2287
Eco130I	CCWWGG	3 cut(s)	64, 871, 2040
Eco24I	GRGCYC	1 cut(s)	2289
Eco31I	GGTCTC	2 cut(s)	1412, 2233
Eco47I	GGWCC	4 cut(s)	245, 1478, 2134, 2509
Eco47III	AGCGCT	1 cut(s)	508
Eco53kI	GAGCTC	1 cut(s)	2287
Eco57I	CTGAAG	2 cut(s)	29, 2700
Eco81I	CCTNAGG	1 cut(s)	1685
Eco88I	CYCGRG	1 cut(s)	447
Eco91I	GGTNACC	3 cut(s)	1826, 2417, 2839
EcoICRI	GAGCTC	1 cut(s)	2287
EcoNI	CCTNNNNNAGG	1 cut(s)	994
EcoO109I	RGGNCCY	2 cut(s)	2134, 2509
EcoO65I	GGTNACC	3 cut(s)	1826, 2417, 2839
EcoRI	GAATTC	1 cut(s)	983
EcoRII	CCWGG	5 cut(s)	241, 693, 995, 2345, 2833
EcoT14I	CCWWGG	3 cut(s)	64, 871, 2040
EcoT22I	ATGCAT	2 cut(s)	678, 1143
EcoT38I	GRGCYC	1 cut(s)	2289
ErhI	CCWWGG	3 cut(s)	64, 871, 2040
Esp3I	CGTCTC	1 cut(s)	1071
FaqI	GGGAC	2 cut(s)	1388, 1464
FbaI	TGATCA	1 cut(s)	2278
FokI	GGATG	6 cut(s)	47, 710, 1923, 2222, 2372, 2398
FriOI	GRGCYC	1 cut(s)	2289
GlaI	GCGC	3 cut(s)	508, 860, 881
GsaI	CCCAGC	2 cut(s)	1761, 2796
GsuI	CTGGAG	2 cut(s)	1181, 1329
HaeII	RGCGCY	1 cut(s)	510
HaeIII	GGCC	7 cut(s)	480, 870, 1444, 1550, 1690, 1697, 2353
HapII	CCGG	6 cut(s)	962, 1404, 1773, 1998, 2415, 2636
HgaI	GACGC	2 cut(s)	415, 2678
HhaI	GCGC	3 cut(s)	509, 861, 882
Hin6I	GCGC	3 cut(s)	507, 859, 880
HinP1I	GCGC	3 cut(s)	507, 859, 880
HincII	GTYRAC	4 cut(s)	1107, 1707, 1901, 2434
HindII	GTYRAC	4 cut(s)	1107, 1707, 1901, 2434
HindIII	AAGCTT	2 cut(s)	950, 1083
HpaI	GTTAAC	1 cut(s)	1107
HpaII	CCGG	6 cut(s)	962, 1404, 1773, 1998, 2415, 2636
Hpy188I	TCNGA	9 cut(s)	48, 1045, 1093, 1504, 1949, 2157, 2233, 2312, 2830
Hpy188III	TCNNGA	9 cut(s)	328, 935, 1308, 1817, 1979, 2171, 2282, 2372, 2539
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	9 cut(s)	149, 361, 1223, 1622, 1670, 1759, 2329, 2586, 2842
HpyCH4III	ACNGT	7 cut(s)	33, 403, 415, 1155, 2153, 2223, 2317
HpyCH4IV	ACGT	4 cut(s)	1068, 1205, 1470, 1605
HpyF10VI	GCNNNNNNNGC	7 cut(s)	216, 867, 1330, 1858, 2099, 2731, 2809
HpySE526I	ACGT	4 cut(s)	1068, 1205, 1470, 1605
HspAI	GCGC	3 cut(s)	507, 859, 880
Ksp22I	TGATCA	1 cut(s)	2278
KspAI	GTTAAC	1 cut(s)	1107
Kzo9I	GATC	9 cut(s)	149, 517, 741, 922, 1462, 1646, 1962, 2278, 2598
LguI	GCTCTTC	1 cut(s)	494
LmnI	GCTCC	7 cut(s)	496, 638, 844, 1053, 2044, 2292, 2789
Lsp1109I	GCAGC	7 cut(s)	90, 228, 231, 332, 1068, 2438, 2542
LweI	GCATC	7 cut(s)	307, 663, 670, 685, 1945, 2013, 2200
MaeII	ACGT	4 cut(s)	1068, 1205, 1470, 1605
MalI	GATC	9 cut(s)	151, 519, 743, 924, 1464, 1648, 1964, 2280, 2600
MbiI	CCGCTC	1 cut(s)	2710
MboI	GATC	9 cut(s)	149, 517, 741, 922, 1462, 1646, 1962, 2278, 2598
MflI	RGATCY	3 cut(s)	149, 741, 1462
MhlI	GDGCHC	3 cut(s)	1335, 2289, 2502
MlsI	TGGCCA	4 cut(s)	480, 870, 1444, 1697
MluI	ACGCGT	1 cut(s)	2670
MluNI	TGGCCA	4 cut(s)	480, 870, 1444, 1697
MlyI	GAGTC	6 cut(s)	952, 1390, 1702, 1814, 2190, 2267
MmeI	TCCRAC	2 cut(s)	127, 1777
Mox20I	TGGCCA	4 cut(s)	480, 870, 1444, 1697
Mph1103I	ATGCAT	2 cut(s)	678, 1143
MroXI	GAANNNNTTC	2 cut(s)	1568, 2035
MscI	TGGCCA	4 cut(s)	480, 870, 1444, 1697
MslI	CAYNNNNRTG	3 cut(s)	287, 401, 2396
Msp20I	TGGCCA	4 cut(s)	480, 870, 1444, 1697
MspA1I	CMGCKG	3 cut(s)	323, 1693, 1761
MspI	CCGG	6 cut(s)	962, 1404, 1773, 1998, 2415, 2636
MspR9I	CCNGG	5 cut(s)	243, 695, 997, 2347, 2835
Mva1269I	GAATGC	1 cut(s)	1771
MvaI	CCWGG	5 cut(s)	243, 695, 997, 2347, 2835
MvnI	CGCG	3 cut(s)	861, 2672, 2846
MwoI	GCNNNNNNNGC	7 cut(s)	216, 867, 1330, 1858, 2099, 2731, 2809
NcoI	CCATGG	2 cut(s)	64, 2040
NdeII	GATC	9 cut(s)	149, 517, 741, 922, 1462, 1646, 1962, 2278, 2598
NlaIV	GGNNCC	8 cut(s)	151, 640, 743, 1464, 1480, 1681, 2136, 2511
NmeAIII	GCCGAG	1 cut(s)	599
NsiI	ATGCAT	2 cut(s)	678, 1143
NspI	RCATGY	1 cut(s)	1145
OliI	CACNNNNGTG	1 cut(s)	287
PaeI	GCATGC	1 cut(s)	1145
PaeR7I	CTCGAG	1 cut(s)	447
PagI	TCATGA	2 cut(s)	1816, 2538
PciSI	GCTCTTC	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	1 cut(s)	1012
PctI	GAATGC	1 cut(s)	1771
PdmI	GAANNNNTTC	2 cut(s)	1568, 2035
PfeI	GAWTC	8 cut(s)	931, 938, 1191, 1264, 1487, 1982, 2079, 2167
PfoI	TCCNGGA	1 cut(s)	693
PinAI	ACCGGT	2 cut(s)	961, 1772
PleI	GAGTC	6 cut(s)	951, 1390, 1702, 1814, 2190, 2266
PpsI	GAGTC	6 cut(s)	951, 1390, 1702, 1814, 2190, 2266
Ppu21I	YACGTR	1 cut(s)	1606
PpuMI	RGGWCCY	2 cut(s)	2134, 2509
PsiI	TTATAA	2 cut(s)	956, 2693
Psp124BI	GAGCTC	1 cut(s)	2289
Psp5II	RGGWCCY	2 cut(s)	2134, 2509
Psp6I	CCWGG	5 cut(s)	241, 693, 995, 2345, 2833
PspEI	GGTNACC	3 cut(s)	1826, 2417, 2839
PspFI	CCCAGC	2 cut(s)	1757, 2792
PspGI	CCWGG	5 cut(s)	241, 693, 995, 2345, 2833
PspN4I	GGNNCC	8 cut(s)	151, 640, 743, 1464, 1480, 1681, 2136, 2511
PspPI	GGNCC	4 cut(s)	245, 1478, 2134, 2509
PspPPI	RGGWCCY	2 cut(s)	2134, 2509
PspXI	VCTCGAGB	1 cut(s)	447
PstNI	CAGNNNCTG	2 cut(s)	1490, 2834
PsuI	RGATCY	3 cut(s)	149, 741, 1462
PvuII	CAGCTG	1 cut(s)	1761
RsaI	GTAC	9 cut(s)	193, 202, 720, 1067, 1130, 1152, 1617, 2271, 2648
RsaNI	GTAC	9 cut(s)	192, 201, 719, 1066, 1129, 1151, 1616, 2270, 2647
RseI	CAYNNNNRTG	3 cut(s)	287, 401, 2396
SacI	GAGCTC	1 cut(s)	2289
SapI	GCTCTTC	1 cut(s)	494
Sau3AI	GATC	9 cut(s)	149, 517, 741, 922, 1462, 1646, 1962, 2278, 2598
Sau96I	GGNCC	4 cut(s)	245, 1478, 2134, 2509
ScaI	AGTACT	2 cut(s)	193, 202
SchI	GAGTC	6 cut(s)	952, 1390, 1702, 1814, 2190, 2267
ScrFI	CCNGG	5 cut(s)	243, 695, 997, 2347, 2835
SduI	GDGCHC	3 cut(s)	1335, 2289, 2502
SfaNI	GCATC	7 cut(s)	307, 663, 670, 685, 1945, 2013, 2200
SfcI	CTRYAG	1 cut(s)	2251
Sfr274I	CTCGAG	1 cut(s)	447
SinI	GGWCC	4 cut(s)	245, 1478, 2134, 2509
SlaI	CTCGAG	1 cut(s)	447
SmiMI	CAYNNNNRTG	3 cut(s)	287, 401, 2396
SmlI	CTYRAG	3 cut(s)	447, 680, 2370
SmoI	CTYRAG	3 cut(s)	447, 680, 2370
SpeI	ACTAGT	3 cut(s)	203, 224, 1288
SphI	GCATGC	1 cut(s)	1145
SspI	AATATT	1 cut(s)	2036
SstI	GAGCTC	1 cut(s)	2289
StyD4I	CCNGG	5 cut(s)	241, 693, 995, 2345, 2833
StyI	CCWWGG	3 cut(s)	64, 871, 2040
TaaI	ACNGT	7 cut(s)	33, 403, 415, 1155, 2153, 2223, 2317
TaiI	ACGT	4 cut(s)	1071, 1208, 1473, 1608
TaqI	TCGA	9 cut(s)	142, 448, 941, 1006, 1649, 1711, 2082, 2165, 2382
TaqII	GACCGA	1 cut(s)	262
TatI	WGTACW	5 cut(s)	191, 200, 718, 2269, 2646
TauI	GCSGC	3 cut(s)	864, 1693, 2702
TfiI	GAWTC	8 cut(s)	931, 938, 1191, 1264, 1487, 1982, 2079, 2167
TscAI	CASTG	7 cut(s)	289, 388, 1164, 1180, 1742, 1853, 2228
TseI	GCWGC	7 cut(s)	78, 216, 219, 320, 1056, 2426, 2555
TspGWI	ACGGA	6 cut(s)	85, 308, 320, 1451, 2340, 2519
TspRI	CASTG	7 cut(s)	289, 388, 1164, 1180, 1742, 1853, 2228
VpaK11BI	GGWCC	4 cut(s)	245, 1478, 2134, 2509
XagI	CCTNNNNNAGG	1 cut(s)	994
XapI	RAATTY	4 cut(s)	983, 1358, 1382, 2583
XceI	RCATGY	1 cut(s)	1145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2599
XhoI	CTCGAG	1 cut(s)	447
XmnI	GAANNNNTTC	2 cut(s)	1568, 2035
ZrmI	AGTACT	2 cut(s)	193, 202
Zsp2I	ATGCAT	2 cut(s)	678, 1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.