Rh7CG183700
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009649
Physical Location & Seq
Forward (+)
16027152 .. 16030391
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG183700.1

Sequence Viewer

Length: 444 bp
ATGACCTCCTCAACCTTCGAGTGGCTCTACTCCTTGCTCGAGTGCAGGGACCCGATTGGCTCCCCGCTCAATCTCTCTGCCGACCTCCGCCTTGGAATCGGCCTATTCCGCCTGGCCACCGAAGCCAATTACCCGGAGATATCAAGACAATTCCGGGTTTCGGAGTCTGTGTCGAGATTTTTCTCCAAGCAATTGTGTCGTGTTCTCTGCACTAACTACCGGTTCTGGATTGAGTTTCCGAATAAGACTGAGCTTGAATCGGTGTCTTTGGGATTCGAAACCCACACCGGGTTGCCCAATTGCTGCGGTATGATTGACTGTACCCGGTTCAAGTTTAACCTTCTAGAAAACACAAAGCCTCCCTCCCGCTCTCTGTTTCTGTTCGCCGCCGCTTCTTCCTCCGCCGGTGAAGCTTTTCGTTTGAAGAACCCAACACTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

147

Amino Acids

16.68

Weight (kDa)

8.26

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 67, 369
AciI CCGC 8 cut(s) 65, 88, 109, 306, 367, 387, 390, 402
AcoI YGGCCR 1 cut(s) 114
AfaI GTAC 1 cut(s) 322
AfiI CCNNNNNNNGG 3 cut(s) 21, 160, 288
AgeI ACCGGT 1 cut(s) 219
AgsI TTSAA 3 cut(s) 257, 331, 424
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 2 cut(s) 253, 413
AluI AGCT 2 cut(s) 253, 413
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 2 cut(s) 100, 114
ApeKI GCWGC 1 cut(s) 303
AsiGI ACCGGT 1 cut(s) 219
Asp700I GAANNNNTTC 1 cut(s) 414
AspS9I GGNCC 1 cut(s) 49
AsuC2I CCSGG 4 cut(s) 134, 155, 289, 325
AsuHPI GGTGA 1 cut(s) 419
AsuII TTCGAA 1 cut(s) 276
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 1 cut(s) 49
BalI TGGCCA 1 cut(s) 116
BbvI GCAGC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 1 cut(s) 113
BcnI CCSGG 4 cut(s) 134, 155, 289, 325
BfaI CTAG 1 cut(s) 344
BisI GCNGC 3 cut(s) 304, 387, 390
BlsI GCNGC 3 cut(s) 305, 388, 391
Bme1390I CCNGG 5 cut(s) 113, 134, 155, 289, 325
Bme18I GGWCC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 3 cut(s) 50, 51, 61
BmrFI CCNGG 5 cut(s) 113, 134, 155, 289, 325
Bpu14I TTCGAA 1 cut(s) 276
BpuMI CCSGG 4 cut(s) 134, 155, 289, 325
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 219
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 343, 373
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 160, 288
Bse118I RCCGGY 2 cut(s) 219, 404
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 3 cut(s) 21, 160, 288
BseMII CTCAG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 290
BsgI GTGCAG 2 cut(s) 64, 193
BshFI GGCC 2 cut(s) 102, 116
BshTI ACCGGT 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 6 cut(s) 134, 154, 220, 288, 325, 405
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 3 cut(s) 21, 160, 288
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 2 cut(s) 102, 116
BsoBI CYCGRG 1 cut(s) 38
Bsp119I TTCGAA 1 cut(s) 276
BspACI CCGC 8 cut(s) 65, 88, 109, 306, 367, 387, 390, 402
BspANI GGCC 2 cut(s) 102, 116
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 3 cut(s) 50, 51, 61
BspT104I TTCGAA 1 cut(s) 276
BsrBI CCGCTC 2 cut(s) 67, 369
BsrFI RCCGGY 2 cut(s) 219, 404
BssAI RCCGGY 2 cut(s) 219, 404
BssECI CCNNGG 1 cut(s) 91
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 320
BstBI TTCGAA 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 249
BstMWI GCNNNNNNNGC 3 cut(s) 108, 122, 410
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 5 cut(s) 111, 132, 153, 287, 323
BstV1I GCAGC 1 cut(s) 290
BsuRI GGCC 2 cut(s) 102, 116
Cfr10I RCCGGY 2 cut(s) 219, 404
Cfr13I GGNCC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 321
CspAI ACCGGT 1 cut(s) 219
CviJI RGCY 8 cut(s) 25, 60, 102, 116, 125, 253, 358, 413
CviKI_1 RGCY 8 cut(s) 25, 60, 102, 116, 125, 253, 358, 413
CviQI GTAC 1 cut(s) 321
DdeI CTNAG 1 cut(s) 249
EaeI YGGCCR 1 cut(s) 114
EciI GGCGGA 3 cut(s) 77, 98, 391
Eco130I CCWWGG 1 cut(s) 91
Eco32I GATATC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 111
EcoRV GATATC 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaiI YATR 1 cut(s) 311
FaqI GGGAC 1 cut(s) 62
FauI CCCGC 2 cut(s) 72, 374
Fnu4HI GCNGC 3 cut(s) 304, 387, 390
Fsp4HI GCNGC 3 cut(s) 304, 387, 390
FspBI CTAG 1 cut(s) 344
GluI GCNGC 3 cut(s) 304, 387, 390
HaeIII GGCC 2 cut(s) 102, 116
HapII CCGG 6 cut(s) 134, 154, 220, 288, 325, 405
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 4 cut(s) 96, 164, 257, 273
HpaII CCGG 6 cut(s) 134, 154, 220, 288, 325, 405
HphI GGTGA 1 cut(s) 419
Hpy188I TCNGA 2 cut(s) 163, 240
Hpy188III TCNNGA 4 cut(s) 144, 174, 226, 344
HpyAV CCTTC 2 cut(s) 25, 350
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 2 cut(s) 45, 210
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 122, 410
HpyF3I CTNAG 1 cut(s) 249
KflI GGGWCCC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 65
Lsp1109I GCAGC 1 cut(s) 290
MaeI CTAG 1 cut(s) 344
MbiI CCGCTC 2 cut(s) 67, 369
MboII GAAGA 2 cut(s) 387, 436
MfeI CAATTG 2 cut(s) 191, 298
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 4 cut(s) 127, 149, 191, 298
MluNI TGGCCA 1 cut(s) 116
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 6 cut(s) 16, 19, 95, 369, 373, 409
Mox20I TGGCCA 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 414
MscI TGGCCA 1 cut(s) 116
MseI TTAA 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 116
MspI CCGG 6 cut(s) 134, 154, 220, 288, 325, 405
MspR9I CCNGG 5 cut(s) 113, 134, 155, 289, 325
MunI CAATTG 2 cut(s) 191, 298
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 108, 122, 410
NciI CCSGG 4 cut(s) 134, 155, 289, 325
NlaIV GGNNCC 3 cut(s) 50, 51, 61
NspV TTCGAA 1 cut(s) 276
PaeR7I CTCGAG 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 414
PfeI GAWTC 3 cut(s) 96, 257, 273
PinAI ACCGGT 1 cut(s) 219
PkrI GCNGC 3 cut(s) 305, 388, 391
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PpuMI RGGWCCY 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 3 cut(s) 50, 51, 61
PspPI GGNCC 1 cut(s) 49
PspPPI RGGWCCY 1 cut(s) 49
PspXI VCTCGAGB 1 cut(s) 38
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 3 cut(s) 304, 387, 390
Sau96I GGNCC 1 cut(s) 49
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 5 cut(s) 113, 134, 155, 289, 325
SetI ASST 6 cut(s) 8, 17, 87, 255, 342, 415
Sfr274I CTCGAG 1 cut(s) 38
SfuI TTCGAA 1 cut(s) 276
SgrAI CRCCGGYG 1 cut(s) 404
SinI GGWCC 1 cut(s) 49
SlaI CTCGAG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 4 cut(s) 127, 149, 191, 298
SsiI CCGC 8 cut(s) 65, 88, 109, 306, 367, 387, 390, 402
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 5 cut(s) 111, 132, 153, 287, 323
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 4 cut(s) 18, 39, 173, 276
TasI AATT 4 cut(s) 127, 149, 191, 298
TauI GCSGC 2 cut(s) 389, 392
TfiI GAWTC 3 cut(s) 96, 257, 273
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 49
XbaI TCTAGA 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 414
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.