DDE superfamily endonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g05781 |
| malus_domestica | MD05G1083600.v1.1 |
| prunus_persica | Prupe.8G128000_v2.0.a1 |
| pyrus_communis | pycom10g08050 |
| rosa_chinensis | RchiOBHm_Chr6g0256701 |
| rosa_laevigata | RLG00000014740 RLG00000025774 |
| rosa_multiflora | Rmu_sc0004908.1_g000021 Rmu_sc0010161.1_g000023 |
| rosa_roxburghii | Rroxscaffold_7G00209110 Rroxscaffold_7G00209120 |
| rosa_rugosa | Rorug05G0565800 |
| rosa_samantha | Rh4CG107600 Rh6AG083800 Rh6BG078300 Rh6CG072900 Rh6DG070100 Rh7AG174500 Rh7BG177700 Rh7CG183700 Rh7DG177100 |
| rosa_wichuraiana | Rw6G007530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 185 |
| AgsI | TTSAA | 5 cut(s) | 144, 162, 221, 292, 334 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 314, 346 |
| AluBI | AGCT | 3 cut(s) | 120, 249, 340 |
| AluI | AGCT | 3 cut(s) | 120, 249, 340 |
| Alw21I | GWGCWC | 1 cut(s) | 122 |
| BanII | GRGCYC | 1 cut(s) | 122 |
| Bbv12I | GWGCWC | 1 cut(s) | 122 |
| BclI | TGATCA | 1 cut(s) | 112 |
| BfaI | CTAG | 1 cut(s) | 246 |
| Bse3DI | GCAATG | 1 cut(s) | 84 |
| BseGI | GGATG | 1 cut(s) | 100 |
| BseMI | GCAATG | 1 cut(s) | 84 |
| BseMII | CTCAG | 1 cut(s) | 137 |
| BseRI | GAGGAG | 1 cut(s) | 167 |
| BseYI | CCCAGC | 1 cut(s) | 86 |
| BsiHKAI | GWGCWC | 1 cut(s) | 122 |
| Bsp1286I | GDGCHC | 1 cut(s) | 122 |
| Bsp143I | GATC | 1 cut(s) | 112 |
| BspCNI | CTCAG | 1 cut(s) | 136 |
| BsrDI | GCAATG | 1 cut(s) | 84 |
| BssMI | GATC | 1 cut(s) | 112 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 3 cut(s) | 276, 299, 314 |
| BstDEI | CTNAG | 1 cut(s) | 123 |
| BstF5I | GGATG | 1 cut(s) | 100 |
| BstKTI | GATC | 1 cut(s) | 115 |
| BstMBI | GATC | 1 cut(s) | 112 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 83, 206 |
| BstNSI | RCATGY | 2 cut(s) | 278, 301 |
| BtsCI | GGATG | 1 cut(s) | 100 |
| Cac8I | GCNNGC | 3 cut(s) | 276, 299, 314 |
| CviAII | CATG | 2 cut(s) | 275, 298 |
| CviJI | RGCY | 7 cut(s) | 11, 120, 176, 200, 249, 316, 340 |
| CviKI_1 | RGCY | 7 cut(s) | 11, 120, 176, 200, 249, 316, 340 |
| DdeI | CTNAG | 1 cut(s) | 123 |
| DpnI | GATC | 1 cut(s) | 114 |
| DpnII | GATC | 1 cut(s) | 112 |
| Ecl136II | GAGCTC | 1 cut(s) | 120 |
| Eco24I | GRGCYC | 1 cut(s) | 122 |
| Eco53kI | GAGCTC | 1 cut(s) | 120 |
| EcoICRI | GAGCTC | 1 cut(s) | 120 |
| EcoT22I | ATGCAT | 1 cut(s) | 196 |
| EcoT38I | GRGCYC | 1 cut(s) | 122 |
| FaeI | CATG | 2 cut(s) | 278, 301 |
| FaiI | YATR | 8 cut(s) | 21, 38, 45, 111, 132, 185, 276, 299 |
| FatI | CATG | 2 cut(s) | 274, 297 |
| FbaI | TGATCA | 1 cut(s) | 112 |
| FokI | GGATG | 1 cut(s) | 107 |
| FriOI | GRGCYC | 1 cut(s) | 122 |
| FspBI | CTAG | 1 cut(s) | 246 |
| GsaI | CCCAGC | 1 cut(s) | 90 |
| Hin1II | CATG | 2 cut(s) | 278, 301 |
| HinfI | GANTC | 1 cut(s) | 224 |
| Hpy188I | TCNGA | 1 cut(s) | 117 |
| Hpy188III | TCNNGA | 1 cut(s) | 221 |
| HpyAV | CCTTC | 1 cut(s) | 166 |
| HpyCH4V | TGCA | 2 cut(s) | 194, 312 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 83, 206 |
| HpyF3I | CTNAG | 1 cut(s) | 123 |
| Hsp92II | CATG | 2 cut(s) | 278, 301 |
| Ksp22I | TGATCA | 1 cut(s) | 112 |
| Kzo9I | GATC | 1 cut(s) | 112 |
| LpnPI | CCDG | 2 cut(s) | 72, 245 |
| MaeI | CTAG | 1 cut(s) | 246 |
| MalI | GATC | 1 cut(s) | 114 |
| MboI | GATC | 1 cut(s) | 112 |
| MboII | GAAGA | 1 cut(s) | 16 |
| MfeI | CAATTG | 1 cut(s) | 162 |
| MhlI | GDGCHC | 1 cut(s) | 122 |
| MluCI | AATT | 3 cut(s) | 139, 162, 329 |
| MmeI | TCCRAC | 1 cut(s) | 72 |
| MnlI | CCTC | 6 cut(s) | 54, 58, 145, 162, 289, 327 |
| Mph1103I | ATGCAT | 1 cut(s) | 196 |
| MunI | CAATTG | 1 cut(s) | 162 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 83, 206 |
| NdeII | GATC | 1 cut(s) | 112 |
| NlaIII | CATG | 2 cut(s) | 278, 301 |
| NsiI | ATGCAT | 1 cut(s) | 196 |
| NspI | RCATGY | 2 cut(s) | 278, 301 |
| PaeI | GCATGC | 2 cut(s) | 278, 301 |
| PfeI | GAWTC | 1 cut(s) | 224 |
| PsiI | TTATAA | 1 cut(s) | 185 |
| Psp124BI | GAGCTC | 1 cut(s) | 122 |
| PspFI | CCCAGC | 1 cut(s) | 86 |
| SacI | GAGCTC | 1 cut(s) | 122 |
| Sau3AI | GATC | 1 cut(s) | 112 |
| SduI | GDGCHC | 1 cut(s) | 122 |
| SetI | ASST | 3 cut(s) | 122, 251, 342 |
| SphI | GCATGC | 2 cut(s) | 278, 301 |
| Sse9I | AATT | 3 cut(s) | 139, 162, 329 |
| SspI | AATATT | 1 cut(s) | 231 |
| SspMI | CTAG | 1 cut(s) | 246 |
| SstI | GAGCTC | 1 cut(s) | 122 |
| TaqI | TCGA | 1 cut(s) | 236 |
| TasI | AATT | 3 cut(s) | 139, 162, 329 |
| TfiI | GAWTC | 1 cut(s) | 224 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| XceI | RCATGY | 2 cut(s) | 278, 301 |
| XspI | CTAG | 1 cut(s) | 246 |
| Zsp2I | ATGCAT | 1 cut(s) | 196 |