RLG00000027737

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0004310
Physical Location & Seq
Forward (+)
14586777 .. 14587600
824 bp
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UTR
Exon/CDS
Intron
RLM00000027737

Sequence Viewer

Length: 357 bp
ATGCCACCTGATTTGGATCTTCGCCGTTTTAAGGTTGCGGCAAGTTGGGATATCGACGGCATGGTGGACAATGTTGTGGATGGTATTGGAGGTGGTGGGGACGACAGCGGCTTTGACGGGCTTCTGGGTTGCTGTGGTGGACCTATTCCAGAGACAACGGGTCTGGTTCTGCTAGATGTTAAGGACGTTGCTTTGCAATCAGAGACCACCTGCACTACCATCATAAGAGGTATTTGGGATTGTGTGTGTGTGTGTGTGAGAGAGAGAGGACACTGTAGCACCTTAGATCTTGCATTCCAGCTCCATTCAATTGGGTCCGCCGAGAATTTGAGTATGAATGTCTTTATTGACCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.5

Weight (kDa)

4.15

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 218
AciI CCGC 3 cut(s) 38, 108, 318
AclWI GGATC 1 cut(s) 24
AcsI RAATTY 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 309
AhdI GACNNNNNGTC 1 cut(s) 159
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw26I GTCTC 2 cut(s) 146, 197
AlwI GGATC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 325
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AspS9I GGNCC 2 cut(s) 140, 315
AvaII GGWCC 2 cut(s) 140, 315
BccI CCATC 2 cut(s) 74, 227
BceAI ACGGC 2 cut(s) 9, 73
BcoDI GTCTC 2 cut(s) 146, 197
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 274
BfuAI ACCTGC 1 cut(s) 218
BglII AGATCT 1 cut(s) 286
BisI GCNGC 2 cut(s) 39, 109
BlsI GCNGC 2 cut(s) 40, 110
Bme18I GGWCC 2 cut(s) 140, 315
BmeRI GACNNNNNGTC 1 cut(s) 159
BmgT120I GGNCC 2 cut(s) 140, 315
BmiI GGNNCC 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 15
BseGI GGATG 1 cut(s) 85
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 31
BsgI GTGCAG 1 cut(s) 196
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 2 cut(s) 146, 197
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 293
Bso31I GGTCTC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 16, 286
BspACI CCGC 3 cut(s) 38, 108, 318
BspLI GGNNCC 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 218
BspPI GGATC 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 197
BssMI GATC 2 cut(s) 16, 286
Bst4CI ACNGT 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 2 cut(s) 19, 289
BstMAI GTCTC 2 cut(s) 146, 197
BstMBI GATC 2 cut(s) 16, 286
BstSFI CTRYAG 1 cut(s) 274
BstX2I RGATCY 2 cut(s) 16, 286
BstXI CCANNNNNNTGG 1 cut(s) 311
BstYI RGATCY 2 cut(s) 16, 286
BtsCI GGATG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 271
BveI ACCTGC 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 140, 315
CspCI CAANNNNNGTGG 1 cut(s) 29
CviAII CATG 1 cut(s) 61
CviJI RGCY 3 cut(s) 111, 121, 301
CviKI_1 RGCY 3 cut(s) 111, 121, 301
DdeI CTNAG 1 cut(s) 283
DpnI GATC 2 cut(s) 18, 288
DpnII GATC 2 cut(s) 16, 286
DriI GACNNNNNGTC 1 cut(s) 159
Eam1105I GACNNNNNGTC 1 cut(s) 159
EciI GGCGGA 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 197
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 2 cut(s) 140, 315
EcoRV GATATC 1 cut(s) 52
FaeI CATG 1 cut(s) 64
FaiI YATR 3 cut(s) 62, 224, 335
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 39, 109
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 2 cut(s) 39, 109
FspBI CTAG 1 cut(s) 173
GluI GCNGC 2 cut(s) 39, 109
Hin1II CATG 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 67, 140
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 2 cut(s) 67, 140
Hpy99I CGWCG 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 196, 213, 293
HpyF3I CTNAG 1 cut(s) 283
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 1 cut(s) 64
Kzo9I GATC 2 cut(s) 16, 286
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 6 cut(s) 21, 110, 149, 162, 223, 311
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 186
MalI GATC 2 cut(s) 18, 288
MboI GATC 2 cut(s) 16, 286
MboII GAAGA 1 cut(s) 11
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 2 cut(s) 16, 286
MluCI AATT 2 cut(s) 309, 325
MnlI CCTC 3 cut(s) 83, 221, 260
MseI TTAA 2 cut(s) 30, 180
MspA1I CMGCKG 1 cut(s) 108
MunI CAATTG 1 cut(s) 309
Mva1269I GAATGC 1 cut(s) 293
NdeII GATC 2 cut(s) 16, 286
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 316
NmeAIII GCCGAG 1 cut(s) 346
PaqCI CACCTGC 1 cut(s) 218
PctI GAATGC 1 cut(s) 293
PkrI GCNGC 2 cut(s) 40, 110
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 2 cut(s) 140, 315
PsuI RGATCY 2 cut(s) 16, 286
SaqAI TTAA 2 cut(s) 30, 180
SatI GCNGC 2 cut(s) 39, 109
Sau3AI GATC 2 cut(s) 16, 286
Sau96I GGNCC 2 cut(s) 140, 315
SetI ASST 9 cut(s) 10, 36, 94, 145, 189, 212, 232, 284, 303
SfcI CTRYAG 1 cut(s) 274
SinI GGWCC 2 cut(s) 140, 315
Sse9I AATT 2 cut(s) 309, 325
SsiI CCGC 3 cut(s) 38, 108, 318
SspMI CTAG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 54
TasI AATT 2 cut(s) 309, 325
TauI GCSGC 2 cut(s) 41, 111
Tru1I TTAA 2 cut(s) 30, 180
Tru9I TTAA 2 cut(s) 30, 180
TscAI CASTG 1 cut(s) 278
TspDTI ATGAA 1 cut(s) 350
TspRI CASTG 1 cut(s) 278
VpaK11BI GGWCC 2 cut(s) 140, 315
XapI RAATTY 1 cut(s) 325
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.