Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004310

Physical Location & Seq

Genomic Coordinates Forward (+)

38908455 .. 38910032

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG176500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGCCCGAGACGGTGGATGCTTCGAAGTCTGGGGATAGTGTGTCGGTCACGATTCGGTTTCGGCCTCAGGTTGCGGCAAGCGGGGATGTCGACGGCGTGGTGGACAATGTTGTGGATGGTACTGGAGGTGGTGGGGACGACGGCGGCTTTGACGGGCTTCTGGGTTGCTGTGGTGGACCTATTCCAGAGACAACGGGTCTGGTTCTGCCAGATGTTAAGGACGGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

76

Amino Acids

7.46

Weight (kDa)

4.05

Isoelectric Point (pI)

24.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21380 AT2G21380 AT4G39050
fragaria_vesca	FvH4_2g10080
malus_domestica	MD05G1058100.v1.1 MD10G1065900.v1.1
prunus_persica	Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1
pyrus_communis	pycom05g04920 pycom10g05130 pycom10g05140
rosa_chinensis	RchiOBHm_Chr6g0267011
rosa_laevigata	RLG00000014051 RLG00000027737 RLG00000037008
rosa_multiflora	Rmu_co8233357.1_g000001 Rmu_sc0013804.1_g000010 Rmu_sc0017071.1_g000008 Rmu_sc0037796.1_g000001 Rmu_sc0041080.1_g000001 Rmu_ssc0000341.1_g000028
rosa_roxburghii	Rroxscaffold_2G00112220 Rroxscaffold_7G00201230
rosa_rugosa	Rorug06G0028400 Rorug06G0028400 Rorug06G0028400
rosa_samantha	Rh1AG191400 Rh1CG176500 Rh6AG150000 Rh6CG146100
rosa_wichuraiana	Rw6G012990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	3 cut(s)	74, 81, 144
AfaI	GTAC	1 cut(s)	121
AhdI	GACNNNNNGTC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	2, 182
Ama87I	CYCGRG	1 cut(s)	5
AoxI	GGCC	1 cut(s)	62
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AspS9I	GGNCC	1 cut(s)	176
AsuII	TTCGAA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	176
AxyI	CCTNAGG	1 cut(s)	66
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	2 cut(s)	109, 157
BcoDI	GTCTC	2 cut(s)	2, 182
BfuAI	ACCTGC	1 cut(s)	216
BisI	GCNGC	2 cut(s)	75, 145
BlsI	GCNGC	2 cut(s)	76, 146
Bme18I	GGWCC	1 cut(s)	176
BmeRI	GACNNNNNGTC	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	176
BmsI	GCATC	1 cut(s)	7
BpmI	CTGGAG	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	127
Bse21I	CCTNAGG	1 cut(s)	66
BseGI	GGATG	3 cut(s)	22, 91, 121
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	149
BsmAI	GTCTC	2 cut(s)	2, 182
BsmBI	CGTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	23
BspACI	CCGC	3 cut(s)	74, 81, 144
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	79
BspMI	ACCTGC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	13
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	3 cut(s)	22, 91, 121
BstMAI	GTCTC	2 cut(s)	2, 182
Bsu36I	CCTNAGG	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	22, 91, 121
BveI	ACCTGC	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	120
CviJI	RGCY	3 cut(s)	64, 147, 157
CviKI_1	RGCY	3 cut(s)	64, 147, 157
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	1 cut(s)	66
DriI	GACNNNNNGTC	1 cut(s)	195
Eam1105I	GACNNNNNGTC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	5
Esp3I	CGTCTC	1 cut(s)	2
FaqI	GGGAC	1 cut(s)	149
FauI	CCCGC	1 cut(s)	74
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	75, 145
FokI	GGATG	3 cut(s)	29, 98, 128
Fsp4HI	GCNGC	2 cut(s)	75, 145
GluI	GCNGC	2 cut(s)	75, 145
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	91, 103, 176
Hpy188III	TCNNGA	2 cut(s)	49, 185
Hpy8I	GTNNAC	3 cut(s)	91, 103, 176
Hpy99I	CGWCG	2 cut(s)	95, 143
HpyCH4III	ACNGT	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	66
LpnPI	CCDG	8 cut(s)	15, 53, 108, 146, 185, 198, 211, 222
LweI	GCATC	1 cut(s)	7
MaeIII	GTNAC	1 cut(s)	46
MnlI	CCTC	2 cut(s)	75, 119
MseI	TTAA	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	46
NspV	TTCGAA	1 cut(s)	23
PaqCI	CACCTGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	76, 146
PspPI	GGNCC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	2 cut(s)	75, 145
Sau96I	GGNCC	1 cut(s)	176
SetI	ASST	4 cut(s)	72, 130, 181, 230
SfaNI	GCATC	1 cut(s)	7
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	1 cut(s)	176
SsiI	CCGC	3 cut(s)	74, 81, 144
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	23, 90
TaqII	GACCGA	1 cut(s)	34
TauI	GCSGC	2 cut(s)	77, 147
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.