RLG00000037008

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
87495329 .. 87495763
435 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037008

Sequence Viewer

Length: 306 bp
ATGCCCGAGACGGTGGATGCTTCGAGGTCTGGGGATAGTGTGTCGGTCATGATTCGGTTTCGGCCTCGGCTAATTTTGCGAGAGAGAGTATCACAGAGGAAATGCAAAAAAGGGAAGAGGCTAAAGATTCGAGCTTTGAGGAGAAAGATGGAGACTTTGGAATTCTGGAACGGACTCGATTTTGCTTGTAATCTCAGAGCCGAAGAGAATTTGAGAGGAGGAGAAGTAGAAGATGGGGAAGCAATCGGTGAGGATGAAGGCGGTGGTTTACGAAGAAAAGGGCAGCACAGGGTGTTGGTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.52

Weight (kDa)

10.11

Isoelectric Point (pI)

60.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 261
AcsI RAATTY 2 cut(s) 161, 208
AdeI CACNNNGTG 1 cut(s) 292
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw26I GTCTC 2 cut(s) 2, 146
Ama87I CYCGRG 1 cut(s) 5
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 283
ApoI RAATTY 2 cut(s) 161, 208
AsuHPI GGTGA 1 cut(s) 260
AvaI CYCGRG 1 cut(s) 5
BbvI GCAGC 1 cut(s) 295
BccI CCATC 2 cut(s) 142, 227
BcoDI GTCTC 2 cut(s) 2, 146
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
BmeT110I CYCGRG 1 cut(s) 5
BmsI GCATC 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 2 cut(s) 22, 259
BseMII CTCAG 1 cut(s) 208
BseRI GAGGAG 3 cut(s) 154, 231, 234
BseXI GCAGC 1 cut(s) 295
BshFI GGCC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 5
BsmAI GTCTC 2 cut(s) 2, 146
BsmBI CGTCTC 1 cut(s) 2
BsnI GGCC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 5
BspACI CCGC 1 cut(s) 261
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 2 cut(s) 110, 198
BstDEI CTNAG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 22, 259
BstMAI GTCTC 2 cut(s) 2, 146
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 295
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 2 cut(s) 22, 259
CciI TCATGA 1 cut(s) 48
CviAII CATG 1 cut(s) 49
CviJI RGCY 5 cut(s) 64, 70, 121, 134, 200
CviKI_1 RGCY 5 cut(s) 64, 70, 121, 134, 200
DdeI CTNAG 1 cut(s) 194
DraIII CACNNNGTG 1 cut(s) 292
Eam1104I CTCTTC 2 cut(s) 110, 198
EarI CTCTTC 2 cut(s) 110, 198
Eco88I CYCGRG 1 cut(s) 5
EcoRI GAATTC 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 1 cut(s) 52
FaiI YATR 1 cut(s) 50
FatI CATG 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 2 cut(s) 29, 266
Fsp4HI GCNGC 1 cut(s) 284
GluI GCNGC 1 cut(s) 284
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 1 cut(s) 52
HinfI GANTC 3 cut(s) 52, 127, 174
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 2 cut(s) 49, 166
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 1 cut(s) 194
Hsp92II CATG 1 cut(s) 52
LpnPI CCDG 3 cut(s) 15, 151, 274
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 1 cut(s) 7
MboII GAAGA 4 cut(s) 127, 215, 242, 285
MluCI AATT 3 cut(s) 72, 161, 208
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 8 cut(s) 18, 75, 90, 111, 132, 209, 212, 244
MwoI GCNNNNNNNGC 1 cut(s) 76
NlaIII CATG 1 cut(s) 52
NmeAIII GCCGAG 1 cut(s) 46
PagI TCATGA 1 cut(s) 48
PfeI GAWTC 2 cut(s) 52, 127
PkrI GCNGC 1 cut(s) 285
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
SatI GCNGC 1 cut(s) 284
SchI GAGTC 1 cut(s) 168
SetI ASST 2 cut(s) 29, 136
SfaNI GCATC 1 cut(s) 7
Sse9I AATT 3 cut(s) 72, 161, 208
SsiI CCGC 1 cut(s) 261
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 3 cut(s) 23, 130, 177
TaqII GACCGA 1 cut(s) 34
TasI AATT 3 cut(s) 72, 161, 208
TfiI GAWTC 2 cut(s) 52, 127
TseI GCWGC 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 270
TspGWI ACGGA 1 cut(s) 186
XapI RAATTY 2 cut(s) 161, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.