Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041080.1

Orthogroup ID

OG0004310

Physical Location & Seq

Genomic Coordinates Reverse (-)

552 .. 1301

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041080.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ccaaaccaagaaacacagattcagaaaaccaaatcccacttcttcatctccacgaatcccaacaatcaaattcgtctatccccatattggaagccttcaagtccttactcgtcaacctcctcctggtcctcgttgttcaacggacgcactcgcattccgccctcctcctctagctctgcaacatcgttttacaactccgaaggtggactcggtccccgatccgccacgccgagtcgctcccgttctgaatcaatataccagggctcgcggtcgtacggcggcgtcttgccagtggagttcgcggcggaggagcttatgcccgagacggtggatgcttcgaggtctggggatagtgtgtcgcgagagagagtatcacagaggaaatgcaaaaaagggaagaggataaagattcgagctttgaggaggaagatggagactttggaattctggaacggactcgattttgcttgtaatctcagagccgaagagaatttgagaggaggaggagaagaagatggggaagcaatcggtgaggatgaaggcggtggtttacgaagaaaagggcagcacagggtgttggtggggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031347 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin zf-C3HC4_3

Protein Analysis

195

Amino Acids

21.59

Weight (kDa)

9.73

Isoelectric Point (pI)

70.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21380 AT2G21380 AT4G39050
fragaria_vesca	FvH4_2g10080
malus_domestica	MD05G1058100.v1.1 MD10G1065900.v1.1
prunus_persica	Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1
pyrus_communis	pycom05g04920 pycom10g05130 pycom10g05140
rosa_chinensis	RchiOBHm_Chr6g0267011
rosa_laevigata	RLG00000014051 RLG00000027737 RLG00000037008
rosa_multiflora	Rmu_co8233357.1_g000001 Rmu_sc0013804.1_g000010 Rmu_sc0017071.1_g000008 Rmu_sc0037796.1_g000001 Rmu_sc0041080.1_g000001 Rmu_ssc0000341.1_g000028
rosa_roxburghii	Rroxscaffold_2G00112220 Rroxscaffold_7G00201230
rosa_rugosa	Rorug06G0028400 Rorug06G0028400 Rorug06G0028400
rosa_samantha	Rh1AG191400 Rh1CG176500 Rh6AG150000 Rh6CG146100
rosa_wichuraiana	Rw6G012990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	268, 302, 361
AciI	CCGC	7 cut(s)	158, 222, 268, 279, 302, 305, 543
AclWI	GGATC	1 cut(s)	213
AcsI	RAATTY	3 cut(s)	69, 443, 490
AcyI	GRCGYC	1 cut(s)	282
AdeI	CACNNNGTG	1 cut(s)	574
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	2 cut(s)	87, 123
AgsI	TTSAA	2 cut(s)	99, 139
AjnI	CCWGG	2 cut(s)	122, 258
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AluBI	AGCT	3 cut(s)	174, 313, 416
AluI	AGCT	3 cut(s)	174, 313, 416
Alw26I	GTCTC	2 cut(s)	317, 428
AlwI	GGATC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	320
ApeKI	GCWGC	1 cut(s)	565
ApoI	RAATTY	3 cut(s)	69, 443, 490
AspS9I	GGNCC	2 cut(s)	126, 212
AsuHPI	GGTGA	1 cut(s)	542
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	2 cut(s)	126, 212
BanII	GRGCYC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	2 cut(s)	424, 509
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	2 cut(s)	124, 260
BcoDI	GTCTC	2 cut(s)	317, 428
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	3 cut(s)	280, 303, 566
BlsI	GCNGC	3 cut(s)	281, 304, 567
Bme1390I	CCNGG	2 cut(s)	124, 260
Bme18I	GGWCC	2 cut(s)	126, 212
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	126, 212
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	2 cut(s)	124, 260
BmsI	GCATC	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 123
Bse1I	ACTGG	1 cut(s)	290
BseBI	CCWGG	2 cut(s)	124, 260
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	2 cut(s)	337, 541
BseLI	CCNNNNNNNGG	2 cut(s)	87, 123
BseMII	CTCAG	1 cut(s)	490
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	8 cut(s)	109, 154, 157, 323, 436, 513, 516, 519
BseXI	GCAGC	1 cut(s)	577
Bsh1236I	CGCG	3 cut(s)	268, 302, 361
Bsh1285I	CGRYCG	1 cut(s)	272
BsiEI	CGRYCG	1 cut(s)	272
BsiHKCI	CYCGRG	1 cut(s)	320
BsiWI	CGTACG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	2 cut(s)	87, 123
BsmAI	GTCTC	2 cut(s)	317, 428
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	218
Bsp68I	TCGCGA	1 cut(s)	361
BspACI	CCGC	7 cut(s)	158, 222, 268, 279, 302, 305, 543
BspCNI	CTCAG	1 cut(s)	489
BspFNI	CGCG	3 cut(s)	268, 302, 361
BspLI	GGNNCC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	1 cut(s)	218
BssNI	GRCGYC	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	124, 260
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	392, 480
BstACI	GRCGYC	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	476
BstF5I	GGATG	2 cut(s)	337, 541
BstFNI	CGCG	3 cut(s)	268, 302, 361
BstKTI	GATC	1 cut(s)	221
BstMAI	GTCTC	2 cut(s)	317, 428
BstMBI	GATC	1 cut(s)	218
BstMCI	CGRYCG	1 cut(s)	272
BstNI	CCWGG	2 cut(s)	124, 260
BstSCI	CCNGG	2 cut(s)	122, 258
BstUI	CGCG	3 cut(s)	268, 302, 361
BstV1I	GCAGC	1 cut(s)	577
BtsCI	GGATG	2 cut(s)	337, 541
BtsIMutI	CAGTG	1 cut(s)	297
BtuMI	TCGCGA	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	126, 212
CseI	GACGC	2 cut(s)	153, 271
Csp6I	GTAC	1 cut(s)	274
CviJI	RGCY	6 cut(s)	94, 174, 264, 313, 416, 482
CviKI_1	RGCY	6 cut(s)	94, 174, 264, 313, 416, 482
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	476
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
DraIII	CACNNNGTG	1 cut(s)	574
Eam1104I	CTCTTC	2 cut(s)	392, 480
EarI	CTCTTC	2 cut(s)	392, 480
EciI	GGCGGA	3 cut(s)	147, 211, 320
Eco24I	GRGCYC	1 cut(s)	266
Eco47I	GGWCC	2 cut(s)	126, 212
Eco88I	CYCGRG	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	122, 258
EcoT38I	GRGCYC	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	317
FaiI	YATR	3 cut(s)	85, 256, 317
FaqI	GGGAC	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	280, 303, 566
FokI	GGATG	2 cut(s)	344, 548
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	3 cut(s)	280, 303, 566
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	3 cut(s)	280, 303, 566
HgaI	GACGC	2 cut(s)	153, 271
Hin1I	GRCGYC	1 cut(s)	282
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	7 cut(s)	19, 55, 207, 232, 248, 409, 456
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	3 cut(s)	114, 206, 551
Hpy188I	TCNGA	4 cut(s)	24, 199, 247, 479
Hpy188III	TCNNGA	2 cut(s)	360, 448
Hpy8I	GTNNAC	3 cut(s)	114, 206, 551
HpyAV	CCTTC	3 cut(s)	105, 194, 533
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	2 cut(s)	179, 387
HpyF3I	CTNAG	1 cut(s)	476
Hsp92I	GRCGYC	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	218
LmnI	GCTCC	2 cut(s)	242, 310
LpnPI	CCDG	8 cut(s)	109, 136, 245, 272, 303, 330, 433, 556
Lsp1109I	GCAGC	1 cut(s)	577
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	171
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	7 cut(s)	34, 409, 439, 497, 521, 524, 567
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	3 cut(s)	69, 443, 490
MlyI	GAGTC	3 cut(s)	201, 241, 450
MspR9I	CCNGG	2 cut(s)	124, 260
Mva1269I	GAATGC	1 cut(s)	153
MvaI	CCWGG	2 cut(s)	124, 260
MvnI	CGCG	3 cut(s)	268, 302, 361
NdeII	GATC	1 cut(s)	218
NlaIV	GGNNCC	1 cut(s)	214
NmeAIII	GCCGAG	1 cut(s)	255
NruI	TCGCGA	1 cut(s)	361
PctI	GAATGC	1 cut(s)	153
PfeI	GAWTC	4 cut(s)	19, 55, 248, 409
Pfl23II	CGTACG	1 cut(s)	273
PflFI	GACNNNGTC	1 cut(s)	210
PkrI	GCNGC	3 cut(s)	281, 304, 567
PleI	GAGTC	3 cut(s)	201, 240, 450
PpsI	GAGTC	3 cut(s)	201, 240, 450
Psp6I	CCWGG	2 cut(s)	122, 258
PspGI	CCWGG	2 cut(s)	122, 258
PspLI	CGTACG	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	126, 212
PsyI	GACNNNGTC	1 cut(s)	210
RruI	TCGCGA	1 cut(s)	361
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SatI	GCNGC	3 cut(s)	280, 303, 566
Sau3AI	GATC	1 cut(s)	218
Sau96I	GGNCC	2 cut(s)	126, 212
SchI	GAGTC	3 cut(s)	201, 241, 450
ScrFI	CCNGG	2 cut(s)	124, 260
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	6 cut(s)	119, 176, 205, 315, 344, 418
SfaNI	GCATC	1 cut(s)	322
SinI	GGWCC	2 cut(s)	126, 212
Sse9I	AATT	3 cut(s)	69, 443, 490
SsiI	CCGC	7 cut(s)	158, 222, 268, 279, 302, 305, 543
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	122, 258
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	3 cut(s)	338, 412, 459
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	3 cut(s)	69, 443, 490
TauI	GCSGC	2 cut(s)	282, 305
TfiI	GAWTC	4 cut(s)	19, 55, 248, 409
TscAI	CASTG	1 cut(s)	297
TseI	GCWGC	1 cut(s)	565
TspDTI	ATGAA	2 cut(s)	34, 552
TspGWI	ACGGA	2 cut(s)	156, 468
TspRI	CASTG	1 cut(s)	297
Tth111I	GACNNNGTC	1 cut(s)	210
VpaK11BI	GGWCC	2 cut(s)	126, 212
XapI	RAATTY	3 cut(s)	69, 443, 490
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.