Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000341.1

Orthogroup ID

OG0004310

Physical Location & Seq

Genomic Coordinates Reverse (-)

113166 .. 113664

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000341.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ctgccctccttctctagctcggcaacatcgttttacaactccgaaggtggactcggtccccgatccgccacgccgagtcgctcccgttctgaatcaatataccagggctcgcggtcttacggcggcgtcttgccggtagagttcgcggcggaggagcttatgcccgagatggtggatgcttcgaggtctggggatagtgtgtcgatcacgattcggtttcggcctcagcgagagagagtatcacagaggaaatgcaaaaaagggaagaggctaaagatgcgagctttgaggttaaatatatattttgaggagaaagatggagactttggaattctggaacggactcgattttgcttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031347 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin zf-C3HC4_3

Protein Analysis

119

Amino Acids

13.41

Weight (kDa)

9.85

Isoelectric Point (pI)

80.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21380 AT2G21380 AT4G39050
fragaria_vesca	FvH4_2g10080
malus_domestica	MD05G1058100.v1.1 MD10G1065900.v1.1
prunus_persica	Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1 Prupe.8G087800_v2.0.a1
pyrus_communis	pycom05g04920 pycom10g05130 pycom10g05140
rosa_chinensis	RchiOBHm_Chr6g0267011
rosa_laevigata	RLG00000014051 RLG00000027737 RLG00000037008
rosa_multiflora	Rmu_co8233357.1_g000001 Rmu_sc0013804.1_g000010 Rmu_sc0017071.1_g000008 Rmu_sc0037796.1_g000001 Rmu_sc0041080.1_g000001 Rmu_ssc0000341.1_g000028
rosa_roxburghii	Rroxscaffold_2G00112220 Rroxscaffold_7G00201230
rosa_rugosa	Rorug06G0028400 Rorug06G0028400 Rorug06G0028400
rosa_samantha	Rh1AG191400 Rh1CG176500 Rh6AG150000 Rh6CG146100
rosa_wichuraiana	Rw6G012990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	112, 146
AciI	CCGC	5 cut(s)	66, 112, 123, 146, 149
AclWI	GGATC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	126
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	3 cut(s)	18, 157, 284
AluI	AGCT	3 cut(s)	18, 157, 284
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	1 cut(s)	57
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	56
AvaI	CYCGRG	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	163, 311
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	315
BfaI	CTAG	1 cut(s)	15
BisI	GCNGC	2 cut(s)	124, 147
BlsI	GCNGC	2 cut(s)	125, 148
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	56
BmeT110I	CYCGRG	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	166, 267
Bpu10I	CCTNAGC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	239
BseRI	GAGGAG	2 cut(s)	167, 323
Bsh1236I	CGCG	2 cut(s)	112, 146
BshFI	GGCC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	62, 204
BspACI	CCGC	5 cut(s)	66, 112, 123, 146, 149
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	2 cut(s)	112, 146
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	62, 204
BssNI	GRCGYC	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	110, 282
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	2 cut(s)	112, 146
BstKTI	GATC	2 cut(s)	65, 207
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	2 cut(s)	62, 204
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstUI	CGCG	2 cut(s)	112, 146
BsuRI	GGCC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	181
Cac8I	GCNNGC	2 cut(s)	110, 282
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	56
CseI	GACGC	1 cut(s)	115
CviJI	RGCY	6 cut(s)	18, 108, 157, 223, 271, 284
CviKI_1	RGCY	6 cut(s)	18, 108, 157, 223, 271, 284
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	2 cut(s)	64, 206
DpnII	GATC	2 cut(s)	62, 204
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	2 cut(s)	55, 164
Eco24I	GRGCYC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	110
FaiI	YATR	4 cut(s)	100, 161, 299, 301
FaqI	GGGAC	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	124, 147
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	124, 147
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	2 cut(s)	124, 147
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	126
HinfI	GANTC	5 cut(s)	51, 76, 92, 211, 343
HpaII	CCGG	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	43, 91
Hpy188III	TCNNGA	2 cut(s)	208, 335
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	19, 38
HpyCH4V	TGCA	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	62, 204
LmnI	GCTCC	2 cut(s)	86, 154
LpnPI	CCDG	5 cut(s)	89, 116, 147, 174, 320
LweI	GCATC	2 cut(s)	166, 267
MaeI	CTAG	1 cut(s)	15
MalI	GATC	2 cut(s)	64, 206
MboI	GATC	2 cut(s)	62, 204
MboII	GAAGA	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	1 cut(s)	330
MlyI	GAGTC	3 cut(s)	45, 85, 337
MnlI	CCTC	8 cut(s)	16, 145, 177, 234, 240, 261, 282, 301
MseI	TTAA	1 cut(s)	293
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	2 cut(s)	112, 146
MwoI	GCNNNNNNNGC	1 cut(s)	277
NdeII	GATC	2 cut(s)	62, 204
NlaIV	GGNNCC	1 cut(s)	58
NmeAIII	GCCGAG	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	2 cut(s)	26, 226
PfeI	GAWTC	2 cut(s)	92, 211
PflFI	GACNNNGTC	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	125, 148
PleI	GAGTC	3 cut(s)	45, 84, 337
PpsI	GAGTC	3 cut(s)	45, 84, 337
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	56
PsyI	GACNNNGTC	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	2 cut(s)	124, 147
Sau3AI	GATC	2 cut(s)	62, 204
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	3 cut(s)	45, 85, 337
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	6 cut(s)	20, 49, 159, 188, 286, 293
SfaNI	GCATC	2 cut(s)	166, 267
SinI	GGWCC	1 cut(s)	56
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	5 cut(s)	66, 112, 123, 146, 149
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	102
TaqI	TCGA	3 cut(s)	182, 203, 346
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	1 cut(s)	330
TauI	GCSGC	2 cut(s)	126, 149
TfiI	GAWTC	2 cut(s)	92, 211
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TspGWI	ACGGA	1 cut(s)	355
Tth111I	GACNNNGTC	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	330
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.